Neuroscience and Neurobiology Commons^™

Teaching With Big Data: Report From The 2016 Society For Neuroscience Teaching Workshop, William Grisham, Joshua C. Brumberg, Terri Gilbert, Linda Lanyon, Robert W. Williams, Richard F. Olivo

Neuroscience: Faculty Publications

As part of a series of workshops on teaching neuroscience at the Society for Neuroscience annual meetings, William Grisham and Richard Olivo organized the 2016 workshop on "Teaching Neuroscience with Big Data." This article presents a summary of that workshop.

Speakers provided overviews of open datasets that could be used in teaching undergraduate courses. These included resources that already appear in educational settings, including the Allen Brain Atlas (presented by Joshua Brumberg and Terri Gilbert), and the Mouse Brain Library and GeneNetwork (presented by Robert Williams). Other resources, such as NeuroData (presented by William R. Gray Roncal), and OpenFMRI, NeuroVault, …

Gpr37l1 Modulates Seizure Susceptibility: Evidence From Mouse Studies And Analyses Of A Human Gpr37l1 Variant, Michelle M. Giddens, Jennifer C. Wong, Jason P. Schroeder, Emily G. Farrow, Brilee M. Smith, Sharon Owino, Sarah E. Soden, Rebecca C. Meyer, Carol Saunders, J. B. Lepichon, David Weinshenker, Andrew Escayg, Randy A. Hall

Neuroscience: Faculty Publications

Progressive myoclonus epilepsies (PMEs) are disorders characterized by myoclonic and generalized seizures with progressive neurological deterioration. While several genetic causes for PMEs have been identified, the underlying causes remain unknown for a substantial portion of cases. Here we describe several affected individuals from a large, consanguineous family presenting with a novel PME in which symptoms begin in adolescence and result in death by early adulthood. Whole exome analyses revealed that affected individuals have a homozygous variant in GPR37L1 (c.1047G > T [Lys349Asn]), an orphan G protein-coupled receptor (GPCR) expressed predominantly in the brain. In vitro studies demonstrated that the K349N substitution …

Mice Lacking Gpr37 Exhibit Decreased Expression Of The Myelin-Associated Glycoprotein Mag And Increased Susceptibility To Demyelination, Brilee M. Smith, Michelle M. Giddens, Jessica Neil, Sharon Owino, Trang Kimberly T. Nguyen, Duc Duong, Fengqiao Li, Randy A. Hall

Neuroscience: Faculty Publications

GPR37 is an orphan G protein-coupled receptor that is predominantly expressed in the brain and found at particularly high levels in oligodendrocytes. GPR37 has been shown to exert effects on oligodendrocyte differentiation and myelination during development, but the molecular basis of these actions is incompletely understood and moreover nothing is known about the potential role(s) of this receptor under demyelinating conditions. To shed light on the fundamental biology of GPR37, we performed proteomic studies comparing protein expression levels in the brains of mice lacking GPR37 and its close relative GPR37-like 1 (GPR37L1). These studies revealed that one of the proteins …

Hippocampal Contribution To Context Encoding Across Development Is Disrupted Following Early-Life Adversity, Hilary K. Lambert, Margaret A. Sheridan, Kelly A. Sambrook, Maya L. Rosen, Mary K. Askren, Katie A. Mclaughlin

Neuroscience: Faculty Publications

Context can drastically influence responses to environmental stimuli. For example, a gunshot should provoke a different response at a public park than a shooting range. Little is known about how contextual processing and neural correlates change across human development or about individual differences related to early environmental experiences. Children (N = 60; 8–19 years, 24 exposed to interpersonal violence) completed acon text encoding task during fMRI scanning using a delayed match-to-sample design with neutral, happy, and angry facial cues embedded in realistic background scenes. Outside the scanner, participants completed a memory test for context-face pairings. Context memory and neural correlates …

Neurobehavioral Markers Of Resilience To Depression Amongst Adolescent Exposed To Child Abuse, Meg J. Dennison, Margaret A. Sheridan, Daniel S. Busso, Jessica L. Jenness, Matthew Peverill, Maya L. Rosen, Katie A. Mclaughlin

Neuroscience: Faculty Publications

Childhood maltreatment is strongly associated with depression, which is characterized by reduced reactivity to reward. Identifying factors that mitigate risk for depression in maltreated children is important for understanding etiological links between maltreatment and depression as well as improving early intervention and prevention. We examine whether high reward reactivity at behavioral and neurobiological levels is a marker of resilience to depressive symptomology in adolescence following childhood maltreatment. A sample of 59 adolescents (21 with a history of maltreatment; Mean Age = 16.95 years, SD = 1.44) completed an fMRI task involving passive viewing of emotional stimuli. BOLD signal changes to …

Septal Oxytocin Administration Impairs Peer Affiliation Via V1a Receptors In Female Meadow Voles, Allison M.J. Anacker, Jennifer D. Christensen, Elyssa M. Laflamme, Diana M. Grunberg, Annaliese K. Beery

Neuroscience: Faculty Publications

The peptide hormone oxytocin (OT) plays an important role in social behaviors, including social bond formation. In different contexts, however, OT is also associated with aggression, social selectivity, and reduced affiliation. Female meadow voles form social preferences for familiar same-sex peers under short, winter-like day lengths in the laboratory, and provide a means of studying affiliation outside the context of reproductive pair bonds. Multiple lines of evidence suggest that the actions of OT in the lateral septum (LS) may decrease affiliative behavior, including greater density of OT receptors in the LS of meadow voles that huddle less. We infused OT …

Cognitive Control Network Contributions To Memory-Guided Visual Attention, Maya L. Rosen, Chantal E. Stern, Samantha W. Michalka, Kathryn J. Devaney, David C. Somers

Neuroscience: Faculty Publications

Visual attentional capacity is severely limited, but humans excel in familiar visual contexts, in part because long-term memories guide efficient deployment of attention. To investigate the neural substrates that support memory-guided visual attention, we performed a set of functional MRI experiments that contrast long-term, memory-guided visuospatial attention with stimulus-guided visuospatial attention in a change detection task. Whereas the dorsal attention network was activated for both forms of attention, the cognitive control network (CCN) was preferentially activated during memory-guided attention. Three posterior nodes in the CCN, posterior precuneus, posterior callosal sulcus/mid-cingulate, and lateral intraparietal sulcus exhibited the greatest specificity for memory-guided …

Auditory Spatial Coding Flexibly Recruits Anterior, But Not Posterior, Visuotopic Parietal Cortex, Samantha W. Michalka, Maya L. Rosen, Lingqiang Kong, Barbara G. Shinn-Cunningham, David C. Somers

Neuroscience: Faculty Publications

Audition and vision both convey spatial information about the environment, but much less is known about mechanisms of auditory spatial cognition than visual spatial cognition. Human cortex contains >20 visuospatial map representations but no reported auditory spatial maps. The intraparietal sulcus (IPS) contains several of these visuospatial maps, which support visuospatial attention and short-term memory (STM). Neuroimaging studies also demonstrate that parietal cortex is activated during auditory spatial attention and working memory tasks, but prior work has not demonstrated that auditory activation occurs within visual spatial maps in parietal cortex. Here, we report both cognitive and anatomical distinctions in the …

Melatonin Signaling Controls The Daily Rhythm In Blood Glucose Levels Independent Of Peripheral Clocks, Sharon Owino, Susana Contreras-Alcantara, Kenkichi Baba, Gianluca Tosini

Neuroscience: Faculty Publications

Melatonin is rhythmically secreted by both the pineal gland and retina in a circadian fashion, with its peak synthesis occurring during the night. Once synthesized, melatonin exerts its effects by binding to two specific G-protein coupled receptors-melatonin receptor type 1 (MT1) and melatonin receptor type 2(MT2). Recent studies suggest the involvement of MT1 and MT2 in the regulation of glucose homeostasis; however the ability of melatonin signaling to impart timing cues on glucose metabolism remains poorly understood. Here we report that the removal of MT1 or MT2 in mice abolishes the daily rhythm in blood glucose levels. Interestingly, removal of …

Natural Variation In Maternal Care And Cross-Tissue Patterns Of Oxytocin Receptor Gene Methylation In Rats, Annaliese K. Beery, Lisa M. Mcewen, Julia L. Macisaac, Darlene D. Francis, Michael S. Kobor

Neuroscience: Faculty Publications

Since the first report of maternal care effects on DNA methylation in rats, epigenetic modifications of the genome in response to life experience have become the subject of intense focus across many disciplines. Oxytocin receptor expression varies in response to early experience, and both oxytocin signaling and methylation status of the oxytocin receptor gene (Oxtr) in blood have been related to disordered social behavior. It is unknown whether Oxtr methylation varies in response to early life experience, and whether currently employed peripheral measures of Oxtr methylation reflect variation in the brain. We examined the effects of early life rearing experience …

Natural Variation In Maternal Care And Cross-Tissue Patterns Of Oxytocin Receptor Gene Methylation In Rats, Annaliese K. Beery, Lisa M. Mcewen, Julia L. Macisaac, Darlene D. Francis, Michael S. Kobor

Neuroscience: Faculty Publications

This article is part of a Special Issue "Parental Care". Since the first report of maternal care effects on DNA methylation in rats, epigenetic modifications of the genome in response to life experience have become the subject of intense focus across many disciplines. Oxytocin receptor expression varies in response to early experience, and both oxytocin signaling and methylation status of the oxytocin receptor gene (Oxtr) in blood have been related to disordered social behavior. It is unknown whether Oxtr DNA methylation varies in response to early life experience, and whether currently employed peripheral measures of Oxtr methylation reflect variation in …

Suppression Of Locomotor Activity In Female C57bl/6j Mice Treated With Interleukin-1Β: Investigating A Method For The Study Of Fatigue In Laboratory Animals, David R. Bonsall, Hyunji Kim, Awa Ndiaye, Abbey Petronzio, Grace Mckay-Corkum, Penny C. Molyneux, Thomas E. Scammell, Mary E. Harrington

Psychology: Faculty Publications

Fatigue is a disabling symptom in patients with multiple sclerosis and Parkinson’s Disease, and is also common in patients with traumatic brain injury, cancer, and inflammatory disor- ders. Little is known about the neurobiology of fatigue, in part due to the lack of an approach to induce fatigue in laboratory animals. Fatigue is a common response to systemic challenge by pathogens, a response in part mediated through action of the pro-inflammatory cytokine interleukin-1 beta (IL-1β). We investigated the behavioral responses of mice to IL-1β. Female C57Bl/6J mice of 3 ages were administered IL-1β at various doses i.p. Interleukin-1β reduced locomotor …

Short-Term Memory For Space And Time Flexibly Recruit Complementary Sensory-Biased Frontal Lobe Attention Networks, Samantha W. Michalka, Lingqiang Kong, Maya L. Rosen, Barbara G. Shinn-Cunningham, David C. Somers

Neuroscience: Faculty Publications

The frontal lobes control wide-ranging cognitive functions; however, functional subdivisions of human frontal cortex are only coarsely mapped. Here, functional magnetic resonance imaging reveals two distinct visual-biased attention regions in lateral frontal cortex, superior precentral sulcus (sPCS) and inferior precentral sulcus (iPCS), anatomically interdigitated with two auditory-biased attention regions, transverse gyrus intersecting precentral sulcus (tgPCS) and caudal inferior frontal sulcus (cIFS). Intrinsic functional connectivity analysis demonstrates that sPCS and iPCS fall within a broad visual-attention network, while tgPCS and cIFS fall within a broad auditory-attention network. Interestingly, we observe that spatial and temporal short-term memory (STM), respectively, recruit visual and …

Influences Of Long-Term Memory-Guided Attention And Stimulus-Guided Attention On Visuospatial Representations Within Human Intraparietal Sulcus, Maya L. Rosen, Chantal E. Stern, Samantha W. Michalka, Kathryn J. Devaney, David C. Somers

Neuroscience: Faculty Publications

Human parietal cortex plays a central role in encoding visuospatial information and multiple visual maps exist within the intraparietalsulcus (IPS), with each hemisphere symmetrically representing contralateral visual space. Two forms of hemispheric asymmetries havebeen identified in parietal cortex ventrolateral to visuotopic IPS. Key attentional processes are localized to right lateral parietal cortex inthe temporoparietal junction and long-term memory (LTM) retrieval processes are localized to the left lateral parietal cortex in theangular gyrus. Here, using fMRI, we investigate how spatial representations of visuotopic IPS are influenced by stimulus-guided visuospatialattention and by LTM-guided visuospatial attention. We replicate prior findings that a hemispheric …

The Effects Of Visual Search Efficiency On Object-Based Attention, Adam S. Greenberg, Maya Rosen, Elizabeth Cutrone, Marlene Behrmann

Neuroscience: Faculty Publications

The attentional prioritization hypothesis of object-based attention (Shomstein & Yantis in Perception & Psychophysics, 64, 41–51, 2002) suggests a two-stage selection process comprising an automatic spatial gradient and flexible strategic (prioritization) selection. The combined attentional priorities of these two stages of object-based selection determine the order in which participants will search the display for the presence of a target. The strategic process has often been likened to a prioritized visual search. By modifying the double-rectangle cueing paradigm (Egly, Driver, & Rafal in Journal of Experimental Psychology: General, 123, 161–177, 1994) and placing it in the context of a larger-scale visual …

Erin: A Portal To Resources For Higher Education In Neuroscience, Richard F. Olivo, Joseph R. Burdo, Robert Calin-Jagemen, William Grisham, Monica L. Linden, Robert L. Rosenberg, Laura L. Symonds, Janice E. Thornton

Neuroscience: Faculty Publications

ERIN, Educational Resources in Neuroscience, is the Society for Neuroscience's web portal to selected, high- quality materials for higher education. A Board of Editors approves resources after describing them and classifying them by topic, subtopic, media type, author, and appropriate educational level. Some resources are also accompanied by reviews and ratings from faculty who have used the resource. These features make a search of ERIN far more useful than a typical Google search.

ERIN's development was funded by the National Science Foundation with a three-year grant to SfN. Along the way, various unexpected problems arose and solutions were found, many …

Neurobiology Of Stress, Annaliese K. Beery, Daniela Kaufer

Neuroscience: Faculty Publications

The neurobiology of stress and the neurobiology of social behavior are deeply intertwined. The social environment interacts with stress on almost every front: social interactions can be potent stressors; they can buffer the response to an external stressor; and social behavior often changes in response to stressful life experience. This review explores mechanistic and behavioral links between stress, anxiety, resilience, and social behavior in rodents, with particular attention to different social contexts. We consider variation between several different rodent species and make connections to research on humans and nonhuman primates.

Functional Correlates Of Optic Flow Motion Processing In Parkinson's Disease, Deepti Putcha, Robert S. Ross, Maya L. Rosen, Daniel J. Norton, Alice Cronin-Golomb, David C. Somers, Chantal E. Stern

Neuroscience: Faculty Publications

The visual input created by the relative motion between an individual and the environment, also called optic flow, influences the sense of self-motion, postural orientation, veering of gait, and visuospatial cognition. An optic flow network comprising visual motion areas V6, V3A, and MT+, as well as visuo-vestibular areas including posterior insula vestibular cortex (PIVC) and cingulate sulcus visual area (CSv), has been described as uniquely selective for parsing egomotion depth cues in humans. Individuals with Parkinson's disease (PD) have known behavioral deficits in optic flow perception and visuospatial cognition compared to age- and education-matched control adults (MC). The present study …

Kif11 Dependent Cell Cycle Progression In Radial Glial Cells Is Required For Proper Neurogenesis In The Zebrafish Neural Tube, Kimberly Johnson, Chelsea Moriarty, Nessy Tania, Alissa Ortman, Kristina Dipietrantonio, Brittany Edens, Jean Eisenman, Deborah Ok, Sarah Krikorian, Jessica Barragan, Christophe Golé, Michael J.F. Barresi

Mathematics Sciences: Faculty Publications

Radial glia serve as the resident neural stem cells in the embryonic vertebrate nervous system, and their proliferation must be tightly regulated to generate the correct number of neuronal and glial cell progeny in the neural tube. During a forward genetic screen, we recently identified a zebrafish mutant in the kif11 loci that displayed a significant increase in radial glial cell bodies at the ventricular zone of the spinal cord. Kif11, also known as Eg5, is a kinesin-related, plus-end directed motor protein responsible for stabilizing and separating the bipolar mitotic spindle. We show here that Gfap+ radial glial cells express …

Auditory Spatial Attention Representations In The Human Cerebral Cortex, Lingqiang Kong, Samantha W. Michalka, Maya L. Rosen, Summer L. Sheremata, Jascha D. Swisher, Barbara G. Shinn-Cunningham, David C. Somers

Neuroscience: Faculty Publications

Auditory spatial attention serves important functions in auditory source separation and selection. Although auditory spatial attention mechanisms have been generally investigated, the neural substrates encoding spatial information acted on by attention have not been identified in the human neocortex. We performed functional magnetic resonance imaging experiments to identify cortical regions that support auditory spatial attention and to test 2 hypotheses regarding the coding of auditory spatial attention: 1) auditory spatial attention might recruit the visuospatial maps of the intraparietal sulcus (IPS) to create multimodal spatial attention maps; 2) auditory spatial information might be encoded without explicit cortical maps. We mapped …

Long-Term Memory Guidance Of Visuospatial Attention In A Change-Detection Paradigm, Maya L. Rosen, Chantal E. Stern, David C. Somers

Neuroscience: Faculty Publications

Visual task performance is generally stronger in familiar environments. One reason for this familiarity benefit is that we learn where to direct our visual attention and effective attentional deployment enhances performance. Visual working memory plays a central role in supporting long-term memory guidance of visuospatial attention. We modified a change detection task to create a new paradigm for investigating long-term memory guidance of attention. During the training phase, subjects viewed images in a flicker paradigm and were asked to detect between one and three changes in the images. The test phase required subjects to detect a single change in a …

Understanding Melatonin Receptor Pharmacology: Latest Insights From Mouse Models, And Their Relevance To Human Disease, Gianluca Tosini, Sharon Owino, Jean Luc Guillaume, Ralf Jockers

Neuroscience: Faculty Publications

Melatonin, the neuro-hormone synthesized during the night, has recently seen an unexpected extension of its functional implications toward type 2 diabetes development, visual functions, sleep disturbances, and depression. Transgenic mouse models were instrumental for the establishment of the link between melatonin and these major human diseases. Most of the actions of melatonin are mediated by two types of G protein-coupled receptors, named MT1 and MT2, which are expressed in many different organs and tissues. Understanding the pharmacology and function of mouse MT1 and MT2 receptors, including MT1/MT2 heteromers, will be of crucial importance to evaluate the relevance of these mouse …

Precise Lamination Of Retinal Axons Generates Multiple Parallel Input Pathways In The Tectum, Estuardo Robles, Alessandro Filosa, Herwig Baier

Neuroscience: Faculty Publications

The axons of retinal ganglion cells (RGCs) form topographic connections in the optic tectum, recreating a two-dimensional map of the visual field in the midbrain. RGC axons are also targeted to specific positions along the laminar axis of the tectum. Understanding the sensory transformations performed by the tectum requires identification of the rules that control the formation of synaptic laminae by RGC axons. However, there is little information regarding the spatial relationships between multiple axons as they establish laminar and retinotopic arborization fields within the same region of neuropil. Moreover, the contribution of RGC axon lamination to the processing of …

Chronic Stress Elevates Telomerase Activity In Rats, Annaliese K. Beery, Jue Lin, Joshua S. Biddle, Darlene D. Francis, Elizabeth H. Blackburn, Elissa S. Epel

Neuroscience: Faculty Publications

The enzyme telomerase lengthens telomeres—protective structures containing repetitive DNA sequences at chromosome ends. Telomere shortening is associated with diseases of ageing in mammals. Chronic stress has been related to shorter immune-cell telomeres, but telomerase activity under stress may be low, permitting telomere loss, or high, partially attenuating it. We developed an experimental model to examine the impacts of extended unpredictable stress on telomerase activity in male rats. Telomerase activity was 54 per cent higher in stressed rats than in controls, and associated with stress-related physiological and behavioural outcomes. This significant increase suggests a potential mechanism for resilience to stress-related replicative …

Collaborative Online Writing Assignments To Foster Active Learning, Richard F. Olivo

Neuroscience: Faculty Publications

To help students master the content of a neurophysiology course, they were asked to participate in collaborative writing projects. In the first two years, students contributed to a class wiki by summarizing one lecture and editing summaries of several others. In the second two years, students worked in teams of three or four to write a series of illustrated chapters spanning the entire semester. The second assignment kept students more engaged than the wiki project, and although they found it a significant amount of work, they also believed that it helped them learn the subject matter. Working in teams, however, …

Focal Adhesion Kinase Modulates Cdc42 Activity Downstream Of Positive And Negative Axon Guidance Cues, Jonathan P. Myers, Estuardo Robles, Allison Ducharme-Smith, Timothy M. Gomez

Neuroscience: Faculty Publications

There is biochemical, imaging and functional evidence that Rho GTPase signaling is a crucial regulator of actin-based structures such as lamellipodia and filopodia. However, although Rho GTPases are believed to serve similar functions in growth cones, the spatiotemporal dynamics of Rho GTPase signaling has not been examined in living growth cones in response to known axon guidance cues. Here we provide the first measurements of Cdc42 activity in living growth cones acutely stimulated with both growth-promoting and growthinhibiting axon-guidance cues. Interestingly, we find that both permissive and repulsive factors can work by modulating Cdc42 activity, but in opposite directions. We …

Enhancement And Suppression Of Ultradian And Circadian Rhythms Across The Female Hamster Reproductive Cycle, Brian J. Prendergast, Annaliese K. Beery, Matthew J. Paul, Irving Zucker

Neuroscience: Faculty Publications

The impact of ovarian hormones on hamster ultradian rhythms (URs) is unknown. We concurrently monitored URs and circadian rhythms (CRs) of home cage locomotor activity during the estrous cycle, pregnancy, and lactation of Syrian hamsters. URs with a mean period of 4–5 h were evident during the dark phase in more than 90% of females on days 1 and 2 of the estrous cycle but were significantly less prevalent on cycle days 3 and 4. The period of the UR did not vary as a function of estrous cycle stage, but at all stages, the UR period was longer in …

Age-Related Changes In The Daily Rhythm Of Photoreceptor Functioning And Circuitry In A Melatonin-Proficient Mouse Strain, Kenkichi Baba, Francesca Mazzoni, Sharon Owino, Susana Contreras-Alcantara, Enrica Strettoi, Gianluca Tosini

Neuroscience: Faculty Publications

Retinal melatonin is involved in the modulation of many important retinal functions. Our previous studies have shown that the viability of photoreceptors and ganglion cells is reduced during aging in mice that lack melatonin receptor type 1. This demonstrates that melatonin signaling is important for the survival of retinal neurons. In the present study, we investigate the effects of aging on photoreceptor physiology and retinal organization in CH3-f+/+ mice, a melatonin proficient mouse strain. Our data indicate that the amplitude of the a and b waves of the scotopic and photopic electroretinogram decreases with age. Moreover, the daily rhythm in …

Assembly Of Lamina-Specific Neuronal Connections By Slit Bound To Type Iv Collagen, Tong Xiao, Wendy Staub, Estuardo Robles, Nathan J. Gosse, Gregory J. Cole, Herwig Baier

Neuroscience: Faculty Publications

The mechanisms that generate specific neuronal connections in the brain are under intense investigation. In zebrafish, retinal ganglion cells project their axons into at least six layers within the neuropil of the midbrain tectum. Each axon elaborates a single, planar arbor in one of the target layers and forms synapses onto the dendrites of tectal neurons. We show that the laminar specificity of retinotectal connections does not depend on self-sorting interactions among RGC axons. Rather, tectum-derived Slit1, signaling through axonal Robo2, guides neurites to their target layer. Genetic and biochemical studies indicate that Slit binds to Dragnet (Col4a5), a type …

Adaptive Significance Of Natural Variations In Maternal Care In Rats: A Translational Perspective, Annaliese K. Beery, Darlene D. Francis

Neuroscience: Faculty Publications

A wealth of data from the last fifty years documents the potency of early life experiences including maternal care on developing offspring. A majority of this research has focused on the developing stress axis and stress-sensitive behaviors in hopes of identifying factors impacting resilience and risk-sensitivity. The power of early life experience to shape later development is profound and has the potential to increase fitness of individuals for their environments. Current findings in a rat maternal care paradigm highlight the complex and dynamic relation between early experiences and a variety of outcomes. In this review we propose adaptive hypotheses for …