Marine Biology Commons^™

Integrated Environmental Vulnerability Assessment And Adaptation Strategies For Coastal Areas Under Sustainable Development, Lien-Kwei Chien, Yu-Chi Li, Chia-Feng Hsu

Journal of Marine Science and Technology–Taiwan

This research focuses on the holistic management and environmental vulnerability of coastal areas in Taiwan within the framework of sustainable development. With economic and social growth gravitating towards coastal regions, the strain on the natural environment is increasing. Therefore, discovering a balance between economic progress and environmental conservation is paramount. To decipher the vulnerability of Taiwan's coastal zones, this study first defines ‘Integrated Environmental Vulnerability of Coastal Areas.’Key vulnerability factors were identified across environmental, social, and economic dimensions. Seven core determinants were determined using the Fuzzy Delphi method: biodiversity, coastal erosion, water pollution, population density, population aging, land utilization, and …

Evalution Of The Ability To Infer Tilt Angle And Size Distributions Of Fish Using A Broadband Scientific Echosounder Based On Simulation, Jing Liu

Journal of Marine Science and Technology–Taiwan

The biological information, such as species, size, and tilt angle, is crucial for converting the echo data into biomass information in acoustic surveys. Typically, the information can be obtained through trawl net sampling or underwater camera observations. However, both methods have some limitations. To overcome these limitations, scientists have utilized inversion methods with multi-frequency and broadband echosounders to derive biological information about fish, plankton, and krill. However, evaluating the reliability and accuracy of these inversion methods has been challenging due to the difficulty in obtaining accurate biological information. In this study, a numerical simulation method was used to generate fish …

A Marine Knowledge System For Ocean Affairs: Integrating Data, Evaluating Usage, And Enabling Sustainable Marine Management, Yu-Jen Pan

Journal of Marine Science and Technology–Taiwan

This study presents the evolution and assessment of the Marine Knowledge Education System (MKES), designed to improve user acceptance among students in professional marine science courses in Taiwan. The MKES leverages real-world maritime cases from the General Coast Guard Administration and is built upon existing technologies like cloud services, social networks, and data analysis tools. The technology acceptance model (TAM) provides the theoretical underpinning for the assessment of user confidence. Data was collected from 190 participants through purposive sampling. Path analysis confirmed all hypothesized relationships within the TAM with statistical significance (p < 0.001). Additionally, paired-sample t-tests revealed a significant increase in student acceptance of the MKES after integrating it into the marine science curriculum. These findings underscore the capacity of the MKES as a digital learning tool to enrich course pedagogy and improve student learning outcomes, thereby offering valuable support in advancing the education of professional marine managers.

Pilbara Demersal Scalefish Resource Recovery Plan 2023- 2043 (Phase 1), Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

The Pilbara Demersal Scalefish Resource (PDSR) includes over 60 demersal scalefish species. The resource is accessed by the Pilbara Trap Managed Fishery, Pilbara Fish Trawl (Interim) Managed Fishery, and the Pilbara Line Fishery (PTMF, PFTIMF & PLF respectively) as well as the recreational and charter fisheries.

The PDSR is managed in accordance with the North Coast Demersal Scalefish Resource Harvest Strategy (Harvest Strategy). The sustainability objectives of the PDSR are set out in the Harvest Strategy and monitored via the use of an indicator species approach, whereby the status of key species is considered representative of the status of the …

Ecological Risk Assessment For The Western Australian Sea Cucumber Resource, Kimberley A. Smith, Cameron Desfosses, Dave Murphy, Amie Steele, Lachlan W. Strain

Fisheries Research Reports

In April 2024, the Department of Primary Industries and Regional Development (Department) convened an ecological risk assessment (ERA) of the fisheries that access the Western Australian Sea Cucumber Resource, which comprises a range of species from the class Holothuroidea. This document contains background information used to support the ERA risk scoring process, along with the scores from the workshop and a summary of the workshop discussions that were relevant to the scoring. This includes an overview of commercial fisheries that access the Resource, focusing primarily on the WA Sea Cucumber Fishery, and one fishing authorisation issued under the Aboriginal Community …

Effect Of Stocking Density On Growth, Biochemical Composition, And Blood Parameters In The Pacific Shortfin Eel (Anguilla Bicolor Pacifica) Elvers, Frolan A. Aya, John Carlo L. Unida, Luis Maria B. Garcia, Rowena R. Eguia Ma.

The Philippine Agricultural Scientist

This study examined the effect of stocking density on growth, biochemical composition, and blood parameters of the Pacific shortfin eel Anguilla bicolor pacifica. Elvers (1.95 ± 0.14 g body weight) were randomly stocked in indoor tanks and reared over 186 d at three stocking densities (0.3, 0.6, and 0.9 kg m^-3) set up in triplicates. Except for survival and biometric indices, elvers maintained at 0.3 and 0.6 kg m^-3 densities exhibited higher growth and feed utilization than those held at 0.9 kg m^-3. Yield increased with stocking density, which were significantly higher at 0.6 …

Variability In Associations Among Seabirds And Marine Mammals: Causes And Consequences, Samantha A. Monier

Dissertations, Theses, and Capstone Projects

Marine predators today face multifaceted stressors from changing climate to changing prey availability, and these changes are occurring at unprecedented speeds. Any alteration to a species’ environment has the potential to disrupt social networks and thus, how animals obtain and transfer information. Interspecific social interactions in the form of local enhancement and facilitation are a critical, but not yet well-understood, component of seabird foraging; of immediate concern is that anthropogenic changes may be altering the quantity and quality of positive species interactions, with consequences for the species involved.

While we know these interactions are not immutable, less is known about …

Significant Carbonate Burial In The Bahamas Seagrass Ecosystem, Chuancheng Fu, Sofia Frappi, Michelle Nicole Havlik, Wells Howe, S. David Harris, Elisa Laiolo, Austin J. Gallagher, Pere Masque, Carlos M. Duarte

Research outputs 2022 to 2026

Seagrass meadows store significant amounts of carbonate (CaCO3) in sediment, contributing to coastal protection but potentially offsetting their effectiveness as carbon sinks. Understanding the accumulation of CaCO3 and its balance with organic carbon (Corg) in seagrass ecosystems is crucial for developing seagrass-based blue carbon strategies for climate change mitigation. However, CaCO3 accumulation in seagrass meadows varies significantly across geographic regions, with notable data gaps in the Caribbean and Central America. Here, we sampled 10 seagrass meadows across an extensive island chain in The Bahamas, part of the largest seagrass ecosystem and one of the largest CaCO3 banks globally, to evaluate …

How Many Fathers? Frequency Of Multiple Paternity In Soupfin Sharks (Galeorhinus Galeus) From California And Australia, Okoiya Kelly

Theses

Multiple paternity has been widely documented in elasmobranch fishes (sharks, rays, and skates); however, the frequency of multiple paternity (FMP; the percentage of sampled litters having multiple sires) varies greatly both among and within species. Understanding the reasons for this inter- and intraspecific variation in FMP may be key to understanding why females mate with multiple males. The soupfin shark (Galeorhinus galeus) is an understudied species in this regard with only one study previously investigating multiple paternity, in which two out of five litters sampled from New Zealand were found to have multiple sires (FMP = 40.0%). We augmented this …

Avicennia Marina Mangrove Plant Mediated Selenium Nanoparticles And Their Therapeutic Activity Against Oral Pathogens And Other Biological Properties, Kannan Kamala, Pitchiah Sivaperumal, Dhanraj Ganapathy

Journal of Dentistry Indonesia

In the last few decades nanoparticles are widely used in the control of many pathogenic bacteria, fungi, viruses, and cancer growth both in-vitro and in-vivo. A marine plant of Avicennia marina is widely used in traditional medicine for diabetes, inflammation and skin diseases. Objective: In general Avicennia marina has been used as a traditional medicine to treat various diseases and it has shown significant inhibition against various pathogen and the formation of free radicals. Also, the plant A.marina mediated selenium nanoparticles has therapeutic activity has promising to develop biocompatible new cost effective treatment for various oral diseases. Methods: …

A Step By Step Shoreline Attribute Analysis For Selected Waterbodies In The Gulf Of Mexico To Promote The Use Of Living Shorelines, Christoper Boyd, Xutong Niu, Taylor R. Horn

Journal of Extension

Living Shorelines are being promoted by coastal extension professionals as a more resilient nature-based solution to control shoreline erosion. The Virginia Institute of Marine Sciences Living Shorelines Suitability Model was run in selected waterbodies within the Gulf of Mexico.

The locations of the selected water bodies, coastal data sets used, and shoreline protection recommendations generated by the Model are presented. A step-by-step statistical analysis conducted through ArcGIS Pro from these selected coastal shorelines will illustrate how extension professionals with novice GIS experience can use the model output to promote living shorelines to coastal property owners, city managers, and developers.

The Rise Of Dietary Diversity In Coral Reef Fishes, Isabelle Ng, David R. Bellwood, Jan M. Strugnell, Valeriano Parravicini, Alexandre C. Siqueira

Research outputs 2022 to 2026

Diet has been identified as a major driver of reef fish lineage diversification, producing one of the most speciose vertebrate assemblages today. Yet, there is minimal understanding of how, when and why diet itself has evolved. To address this, we used a comprehensive gut content dataset, alongside a recently developed phylogenetic comparative method to assess multivariate prey use across a diverse animal assemblage, coral reef fishes. Specifically, we investigated the diversification, transitions and phylogenetic conservatism of fish diets through evolutionary time. We found two major pulses of diet diversification: one at the end-Cretaceous and one during the Eocene, suggesting that …

Microeukaryote Metabolism Across The Western North Atlantic Ocean Revealed Through Autonomous Underwater Profiling, Natalie R. Cohen, Arianna I. Krinos, Riss M. Kell, Rebecca J. Chmiel, Dawn M. Moran, Matthew R. Mcilvin, Paloma Z. Lopez, Brianna A. Alanis, Eric W. Chan, John A. Breier

School of Earth, Environmental, & Marine Sciences Faculty Publications

Microeukaryotes are key contributors to marine carbon cycling. Their physiology, ecology, and interactions with the chemical environment are poorly understood in offshore ecosystems, and especially in the deep ocean. Using the Autonomous Underwater Vehicle Clio, microbial communities along a 1050 km transect in the western North Atlantic Ocean were surveyed at 10–200 m vertical depth increments to capture metabolic signatures spanning oligotrophic, continental margin, and productive coastal ecosystems. Microeukaryotes were examined using a paired metatranscriptomic and metaproteomic approach. Here we show a diverse surface assemblage consisting of stramenopiles, dinoflagellates and ciliates represented in both the transcript and protein fractions, …

A Comparison Of Diploid And Triploid Eastern Oysters For Aquaculture Production Under Extreme Temperatures And Salinities, Joshua H. Kim

LSU Master's Theses

Off-bottom aquaculture of Eastern oysters (Crassostrea virginica) is a nascent industry that is increasingly supported by the use of triploid oysters, which grow faster than diploids. Despite their growth advantage, elevated triploid mortality compared to diploids under high temperature, low salinity, or a combination of these conditions challenge consistent triploid production. Identifying the environmental thresholds at which differential triploid mortality occurs and predicting its economic impact are important to informing decision-making in oyster aquaculture. The goal of this thesis was to compare the biological and economic performance of diploid and triploid oysters under high temperature and low salinity conditions. …

Assessing Patterns Of Metazoans In The Global Ocean Using Environmental Dna, Nathan R. Geraldi, Silvia G. Acinas, Intikhab Alam, Josep M. Gasol, María Luz Fernández-De-Puelles, Caterina R. Giner, Santiago Hernández León, Ramiro Logares, Ramon Massana, Pablo Sánchez, Vladimir Bajic, Takashi Gojobori, Carlos M. Duarte

Research outputs 2022 to 2026

Documenting large-scale patterns of animals in the ocean and determining the drivers of these patterns is needed for conservation efforts given the unprecedented rates of change occurring within marine ecosystems. We used existing datasets from two global expeditions, Tara Oceans and Malaspina, that circumnavigated the oceans and sampled down to 4000 m to assess metazoans from environmental DNA (eDNA) extracted from seawater. We describe patterns of taxonomic richness within metazoan phyla and orders based on metabarcoding and infer the relative abundance of phyla using metagenome datasets, and relate these data to environmental variables. Arthropods had the greatest taxonomic richness of …

A Comparative Analysis Of Extant Oceanic Shark Species Using Trait-Based Ecology, Elizabeth A. Johnson

All HCAS Student Capstones, Theses, and Dissertations

Over the past few decades, scientists have been working together to mitigate human impacts on global shark populations, but deciding which species need the most immediate attention can be difficult. This study uses a newly emerging approach to ecology, trait-based ecology, to identify trends in trait expression with depth and determine which species have the most unique sets of traits. While trait-based ecology has already been applied to numerous fields, a trait-based approach to shark research is still in its infancy. A total of 15 traits across 337 oceanic shark species were examined to identify trends in trait expression and …

Body Length Determines Flow Refuging For Rainbow Trout (Oncorhynchus Mykiss) Behind Wing Dams, Terry R. Dial, Laura A. Collins, James C. Liao, Bret W. Tobalske

Environment and Society Faculty Publications

Complex hydrodynamics abound in natural streams, yet the selective pressures these impose upon different size classes of fish are not well understood. Attached vortices are produced by relatively large objects that block freestream flow, which fish routinely utilize for flow refuging. To test how flow refuging and the potential harvesting of energy (as seen in Kármán gaiting) varies across size classes in rainbow trout (Oncorhynchus mykiss; fingerling, 8 cm; parr, 14 cm; adult, 21 cm; n = 4 per size class), we used a water flume (4,100 L; freestream flow at 65 cm s^-1) and created …

The Effects Of Simulated Predation And Nursery Structure On Post-Outplant Survival And Growth Of Sexual Juveniles Of Six Caribbean Coral Species, Jarrod Little

All HCAS Student Capstones, Theses, and Dissertations

Over the past few decades, increasing frequency and severity of direct and indirect anthropogenic stressors have resulted in reef degradation and decreased coral cover and diversity. In South Florida, coral propagation ex situ has gained popularity as a means to restore coral cover. Outplanting sexually propagated corals on the reef is particularly important as it contributes to greater genetic diversity and potentially overall reef resilience. However, these corals typically experience high levels of predation following outplanting, significantly reducing coral survival, and thus constitute a major bottleneck to the success of restoration efforts. This study assessed if simulated predation events on …

The Effects Of People, Time Of Day, And Season On Affiliative And Stereotypic Behaviors In Captive Rhinoptera Bonasus And Other Rays Across Two Human-Interactive Enclosures, Wren C. A. Newman

Theses and Dissertations

Cownose rays (Rhinoptera bonasus) are among the most common species found in aquaria, yet the impact of touch enclosures on their welfare remains largely unknown. While research on animal-visitor interactions has produced mixed results for other species, the lack of studies focusing on fish welfare poses a risk of overlooking potential welfare concerns. Therefore, we aimed to establish a baseline for cownose rays regarding stereotypic behaviors, sociality, and activity in captivity, and to examine the influence of human interaction on these behaviors. We collected over 700 hours of footage from two enclosures at Adventure Aquarium in Camden, NJ …

Maternal And Other Social Influences On Signature Whistle Structure Of A Captive Group Of Bottlenose Dolphins (Tursiops Truncatus), Riley Synan

Theses and Dissertations

Bottlenose dolphins (Tursiops truncatus) are social animals that use acoustics as a major method of communicating across a marine environment. They also live in fission-fusion groups and thus interact with many conspecifics over a lifetime. Individual dolphins have a signature whistle that functions as an identity call and serves to maintain group cohesion in murky waters or during reconciliation. Dolphins exhibit vocal learning and the signature whistle of a calf may be modeled after the whistle of their mother or another individual in the pod as they develop. Mother-calf pairs or other related animals sometimes have similar whistle types. Some …

Value Of Macroalgae As Habitat In A Eutrophic Coastal Bay, Dominika Polchowska

Theses, Dissertations and Culminating Projects

Eutrophication is a phenomenon caused by changes in nutrient loading that results in harmful algal blooms, an overgrowth of macroalgae, altered aquatic benthic invertebrate communities, and loss of ecosystem functions. Barnegat Bay, NJ is a highly eutrophic system that has experienced a substantial loss of seagrass beds with subsequent expansion of drift macroalgae. Although considered poor quality, these algal beds represent valuable habitat for many benthic invertebrates. This research assesses the value of macroalgae as a habitat for macrofauna in regions where macroalgae are the dominant “vegetation.” Benthic drift algal samples were collected during June and August 2023 to reflect …

Assessment Of Predation By Common Spider Crab Libinia Emarginata On An Intermittent Food Resource Mytilus Edulis, Noah T. S. Macchirole

Theses, Dissertations and Culminating Projects

Libinia emarginata, commonly known as the portly or common spider crab, is predominantly herbivorous and native to the east coast of the United States. In Barnegat Bay, New Jersey, L. emarginata is a prominent member in eelgrass communities, but is widespread among numerous benthic habitats. Eelgrass beds in Barnegat Bay are also used as settlement sites for blue mussels (Mytilus edulis), which show episodic recruitment events in the spring. These events are ephemeral and variable in timing, location, and quantity. Unlike more extensively studied crabs, such as Callinectes sapidus and Carcinus maenas, there is limited research on the interactions that …

Impact Of Thermal-Hydric Stress Of Physiological Performance And Mating Behavior Of Fiddler Crabs, Talene G. Yeghissian

Dissertations

Fiddler crabs live on the edge of their thermal tolerance limits, balancing the need to thermoregulate with the need to mate. Previous research suggests that increased temperature reduces fiddler crab surface activity time, thus decreasing mating opportunities, throughout the range species with greatest impacts to low latitude populations. The less studied missed mating opportunities associated with behavioral compensation for thermal stress are crucial to understanding species vulnerability to climate change. In this dissertation, I describe a combination of experimental and observational approaches in the field and in the laboratory to investigate the physiological and behavioral responses of fiddler crabs to …

The Benefits Of Biofouling – Promoting The Growth Of Benthic Organisms To Enhance Ecosystem Services, Kailey Nicole Richard, Kelli Z. Hunsucker, Travis J. Hunsucker, Geoffrey Swain

Ocean Engineering and Marine Sciences Student Publications

For the marine industry biofouling has a negative reputation. On ship hulls, the accumulation of these unwanted plants and animals can lead to increased drag, fuel consumption, and greenhouse gas emissions. Offshore platforms are also subject to biofouling which can result in corrosion and hydrodynamic loading, thus shortening their lifespan. While the harmful impacts of biofouling are commonly reported throughout the literature, biofouling can also benefit both aquatic and human populations. Common biofouling organisms act as natural filtration systems, thus improving water quality. Many of the same flora and fauna serve as a food source, and structures could be designed …

Robust Hydropower Planning Balances Energy Generation, Carbon Emissions And Sediment Connectivity In The Mekong River Basin, M. Tangi, Rafael Schmitt, Rafael M. Almeida, S. Bossi, Alexander S. Flecker, F. Sala, A. Castelletti

School of Earth, Environmental, & Marine Sciences Faculty Publications

We present a framework for strategic dam planning under uncertainty, which includes GHG emissions mitigation as a novel objective. We focus on the Mekong River Basin, a fast‐developing region heavily relying on river‐derived ecosystem services. We employ a multi‐objective evolutionary algorithm to identify strategic dam portfolios for different hydropower expansion targets, using process‐related and statistical models to derive indicators of sediment supply disruption and GHG emissions. We introduce a robust optimization approach that explores variations in optimal portfolio compositions for more than 5,000 state‐of‐ the‐world configurations, regarding sediment origins and trapping and GHG emissions. Thus, we can rank dam projects' …

Biometric Assessment Of Spotted Seatrout (Cynoscion Nebulosus) From Recreational And Commercial Fisheries In Mississippi, Usa, Nimah Folake Osho-Abdulgafar

Master's Theses

Quantitative stock assessments for Mississippi’s Spotted Seatrout use length-, age-, and sex-composition data from fishery-independent sources as proxies to estimate biostatistical characteristics of fisheries harvests due to lack of sector-specific data. In Chapter 2, I examined the age, length, and sex composition of Spotted Seatrout from three fishery-dependent sectors. Between April and December 2023, I collected 210 fish (n = 19, 124, and 67 from private, charter, and commercial sectors, respectively). The length ranged between 373-535mm, 285-523mm, and 345-568mm TL, with mean ± SD lengths of 453 ± 51mm, 393 ± 57mm, and 442 ± 53mm TL, respectively. Age ranged …

Development Of A Flow Cytometry Method For The Identification And Enumeration Of Enterococcus Faecalis, Riza Magbitang

Master's Theses

A multi-color flow cytometry method coupled with fluorescent staining was developed to detect and quantify E. faecalis concentrations in coastal waters as an alternative to the traditional membrane filtration method. The developed method was used to characterize E. faecalis during batch growth and yielded consistent results across the various physiological states of the cells. Additionally, the application of propidium iodide (i.e., a viability stain), afforded the method the ability to differentiate between cells with intact and compromised cell membranes, which raises the potential of quantifying cells that are in viable-but-non-culturable (VBNC) state. Initial field test using natural seawater samples spiked …

Projected Range Shift Of The Atlantic Surfclam, Spisula Solidissima, And The Ocean Quahog, Arctica Islandica, Under Climate-Induced Benthic Warming: Forecasting Fishery Influence In The Mid-Atlantic Bight Throughout The 21st Century, Molly Mae Spencer

Master's Theses

The Atlantic surfclam, Spisula solidissima, and ocean quahog, Arctica islandica, are biomass dominant bivalve species on the eastern North American continental shelf, both supporting lucrative commercial fisheries in the Mid-Atlantic with a combined value of $53.6 million in ex-vessel revenue per year. Rapid climate change is expected to modify the geographic range of these bivalve populations across the Mid-Atlantic Bight (MAB), suggesting transformative consequences for the surfclam fishery. This study forecasted future distributions of the two species from years 2016 – 2095, based on projected bottom water temperatures and a temperature-dependent population dynamics model, to project subsequent fishery-based indicators …

Estimation Of Effective Number Of Breeders And Effective Population Size In An Abundant And Heavily Exploited Marine Teleost, Andrea Bertram, Justin Bell, Chris Brauer, David Fairclough, Paul Hamer, Jonathan Sandoval-Castillo, Maren Wellenreuther, Luciano B. Beheregaray

Fisheries Research Articles

Obtaining reliable estimates of the effective number of breeders (Nb) and generational effective population size (Ne) for fishery-important species is challenging because they are often iteroparous and highly abundant, which can lead to bias and imprecision. However, recent advances in understanding of these parameters, as well as the development of bias correction methods, have improved the capacity to generate reliable estimates. We utilized samples of both single-cohort young of the year and mixed-age adults from two geographically and genetically isolated stocks of the Australasian snapper (Chrysophrys auratus) to investigate the feasibility of generating reliable Nb and Ne estimates for a …

Red Harvester Ant, Pogonomyrmex Barbatus, Nests Impact Soil Compaction But Not Temperature In Peri-Urban Habitats Of The Lower Rio Grande Valley, Geovanni Hernandez, Hannah J. Penn, Richard Cano, Lilly Victoria Elliott-Vidaurri, Robin A. Choudhury

School of Earth, Environmental, & Marine Sciences Faculty Publications

Ants are vital ecosystem engineers that can influence soil properties, subsequent soil processes, and associated biota via underground nest construction. Harvester ants consume seeds and are often found in arid areas. They frequently alter the soil chemistry and bulk density of the soils in and around their nest sites. Many species of harvester ants also intentionally remove vegetation around their nest openings, which creates cones or discs of bare soil that may further alter soil temperatures. However, much of the work to study the impacts of harvester ants on soil properties has occurred in shrubland and grassland settings rather than …