Marine Biology Commons^™

Juvenile And Subadult Gulf Sturgeon (Acipenser Desotoi) Use Of The Pascagoula River Estuary, Sarah Stovall

Master's Theses

Gulf Sturgeon (GS) are an anadromous species currently listed as “Threatened” under the Endangered Species Act. They reside in habitats across the northern Gulf of Mexico including coastal rivers, estuaries, and marine waters, making annual migrations between freshwater and marine habitats for spawning/summer resting and feeding, respectively. Since past studies prioritize adult movement, understanding how and when juvenile and subadult GS use the Pascagoula River estuary (PRE), a complex, bifurcated river delta federally designated as critical habitat is necessary to improve conservation efforts. My thesis assessed juvenile and subadult GS use of the PRE across four years (2020-2024) by analyzing …

Global Patterns And Drivers Of Fish Reproductive Potential On Coral Reefs, Jeneen Hadj-Hammou, Joshua E. Cinner, Diego R. Barneche, Iain R. Caldwell, David Mouillot, James P.W. Robinson, Nina M.D. Schiettekatte, Alexandre C. Siqueira, Brett M. Taylor, Nicholas A.J. Graham

Research outputs 2022 to 2026

Fish fecundity scales hyperallometrically with body mass, meaning larger females produce disproportionately more eggs than smaller ones. We explore this relationship beyond the species-level to estimate the “reproductive potential” of 1633 coral reef sites distributed globally. We find that, at the site-level, reproductive potential scales hyperallometrically with assemblage biomass, but with a smaller median exponent than at the species-level. Across all families, modelled reproductive potential is greater in fully protected sites versus fished sites. This difference is most pronounced for the important fisheries family, Serranidae. When comparing a scenario where 30% of sites are randomly fully protected to a current …

Red Snapper (Lutjanus Campechanus) Neurocranium, Michelle Bassali, Anthony D'Auria, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Assessment And Prioritization Of Contaminants Of Concern Along Florida's Coral Reef, Ellen Regina E. Skelton

All HCAS Student Capstones, Theses, and Dissertations

Florida’s Coral Reef (FCR) is the third largest barrier reef in the world and faces significant stress from localized land, water, and air-based sources of pollution. Numerous chemical contaminants have been found in waters surrounding reefs and within corals, including pesticides, hydrocarbons, personal care products, pharmaceuticals, and trace metals. However, for most current and emergent environmental contaminants, little to no consistent information exists regarding environmental concentrations or toxicological effects on corals. Assessment of the levels of contaminants in coral reef environments is needed to conduct risk assessments to guide management, restoration, and recovery strategies, and the coral reef resource management …

Largemouth Bass Neurocranium, Owen Duerbeck, Ian Thelwell, Oliva Weeks

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Black Grouper Neurocranium, Angelina Trapani-Banyra, Victoria Bruno, Mason Schleicher

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Snakehead Neurocranium, Alexis K. Crass, Megan E. Martiello, Matthew D. Gassmann, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Place-Based Conservation In Coastal And Marine Ecosystems: The Importance Of Engagement With Underrepresented Communities, Viniece Jennings, Kelly M. San Antonio, Mya J. Brown, Lalah Choice, Queriah Simpson, Imani Ford, Hyun Jung Cho, Pedro Solis, Ashley Lacey, De’Marcus Robinson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Through the years, research has described the importance of community-based approaches in the management of coastal and marine ecosystems. Coastal and marine issues are multifaceted and require place-specific approaches developed in partnership with vulnerable communities who are impacted by environmental stressors. Place-based conservation, a management approach that focuses on unique, place-specific characteristics, and other similar methods. It considers the need to integrate human dimensions and location-centered approaches, which are often lacking in typical natural resource management. Meaningful engagement with underrepresented communities can holistically account for socioeconomic factors and cultural knowledge that inform best management practices. As the health of marine …

Black Grouper Neurocranium, Grace K. Triplett, Katelyn A. Mckimmy, Lacey Adamik, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Todaro Channeled Apple Snail (Pomacea Canaliculata), Jasmyn Todaro, Amy C. Hirons

Hirons Field Techniques

Channeled Apple Snail (Pomacea canaliculata) shell.

Results From A Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects Of Lc-Ms Acquisition And Data Analysis Procedures, Mak A. Saito, Jaclyn K. Saunders, Matthew R. Mcilvin, Erin M. Bertrand, John A. Breier, Margaret Mars Brisbin

School of Earth, Environmental, & Marine Sciences Faculty Publications

Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and has potential for contributing to ocean ecology and biogeochemical studies. A blinded multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. Euphotic zone samples from the Bermuda Atlantic Time-series Study (BATS) in the North Atlantic Ocean collected by in situ pumps and the autonomous underwater vehicle (AUV) Clio were distributed with a paired metagenome, and one-dimensional (1D) liquid chromatographic data-dependent acquisition mass spectrometry analysis was stipulated. Analysis of mass spectra from …

Red Snapper Neurocranium, Roman Devlin, Michael A. Birnbaum, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

Butterfly Peacock Bass (Cichla Ocellaris) Neurocranium, Jasmyn Todaro, Emma Horton, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

No abstract provided.

A Decade Of Monitoring Reveals A Dynamic Fish Assemblage On A Substantial Artificial Reef In The Texas Gulf Of Mexico, David Hicks, Ethan T. Getz, Richard Kline, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

Fish communities on artificial reefs have rarely been monitored over long periods to evaluate success of reef deployment. Here, we used roving diver surveys to assess changes in fish assemblages on a large, reefed vessel during 2008–2017. Multivariate analyses revealed a dynamic community that stabilized after 5 years. Species richness increased and species dominance decreased during 2008–2017. The fish community shifted toward reef-associated species such as hogfish and pufferfish. Species composition shifted, but trophic structure was relatively stable, which suggested that functional groups may not reflect larger community shifts. Our results indicate that fish communities on artificial reefs are temporally …

Australians Support Multi-Pronged Action To Build Ecosystem Resilience In The Great Barrier Reef, Stewart Lockie, Henry Bartelet, Brent Ritchie, Csilla Demeter, Bruce Taylor, Lintje Sie

Quantitative Methods and Information Technology Faculty Publications

The scale and pace of global environmental change calls for a dramatic upscaling of ecosystem restoration and for actions that build the resilience of ecosystems to future environmental change. This research aimed to quantify public perceptions of threats to the health of the Great Barrier Reef (GBR), Australia, and their support for strategies to address those threats including large-scale restoration and resilience-building actions. We examine how these perceptions change over time and across social cohorts including people living closer to the Reef (n = 2621) and the general Australian population (n = 5825). Respondents were concerned about both …

3d Printed Microfluidic Fabrication Methodology, Characterization, Mechanical Design, And Applications In Electrostatic Artificial Muscles And Benthic Microbial Fuel Cells, Terak B. Hornik

Master's Theses

The fabrication of microfluidic devices often requires specialized methods. The development of these methods requires careful characterization and understanding of the processes involved. Using primarily PolyJet 3D printing technology, microfluidics offers a wide scope of applications such as microfluidic benthic microbial fuel cells (MBMFCs) and electrostatic artificial muscles. MBMFCs benefit from the confinement of the microbes resulting in close proximity between the electrode and the organisms. Using a modular design called the Sponge, assembly and upscaling is possible. Electrostatic artificial muscles benefit from a microfluidic approach due to the non-linearity of electrostatic attraction creating disproportionate benefits when miniaturized. When designed …

Seagrass Classification Using Unsupervised Curriculum Learning (Ucl), Nosheen Abid, Md Kislu Noman, György Kovács, Syed Mohammed Shamsul Islam, Tosin Adewumi, Paul Lavery, Faisal Shafait, Marcus Liwicki

Research outputs 2022 to 2026

Seagrass ecosystems are pivotal in marine environments, serving as crucial habitats for diverse marine species and contributing significantly to carbon sequestration. Accurate classification of seagrass species from underwater images is imperative for monitoring and preserving these ecosystems. This paper introduces Unsupervised Curriculum Learning (UCL) to seagrass classification using the DeepSeagrass dataset. UCL progressively learns from simpler to more complex examples, enhancing the model's ability to discern seagrass features in a curriculum-driven manner. Experiments employing state-of-the-art deep learning architectures, convolutional neural networks (CNNs), show that UCL achieved overall 90.12 % precision and 89 % recall, which significantly improves classification accuracy and …

In Hot Water: Uncertainties In Projecting Marine Heatwaves Impacts On Seagrass Meadows, Paula S. Hatum, Kathryn Mcmahon, Kerrie Mengersen, Jennifer K. Mcwhorter, Paul P.Y. Wu

Research outputs 2022 to 2026

Seagrass ecosystems, vital as primary producer habitats for maintaining high biodiversity and delivering numerous ecosystem services, face increasing threats from climate change, particularly marine heatwaves. This study introduces a pioneering methodology that integrates Dynamic Bayesian Networks of ecosystem resilience with climate projections, aiming to enhance our understanding of seagrass responses to extreme climate events. We developed cutting-edge metrics for measuring shoot density and biomass in terms of population and site extinction, presented as annual ratios relative to their respective baselines. These metrics include associated uncertainties and projected recovery times. This innovative approach was applied in a case study focusing on …

The Moon Jelly, Adam Krogmann

PANDION: The Osprey Journal of Research and Ideas

Artist Statement

The Moon Jelly is a piece I created as a part of the Scientific Illustration course I participated in during the summer semester of 2023. This piece was inspired by the livestreams of the Monterey Bay Aquarium that film these moon jellies (Aurelia aurita) in their tank. The Moon Jelly is an ink drawing created as part of a collection focused on Monterey Bay Aquarium animals. Through this artwork I hoped to draw attention to smaller marine animals that may otherwise be overlooked even though they provide a vital role in the ecosystem. Moon jellyfish are important marine …

Basic Psychological Needs Satisfaction And Well-Being Among Seafarers: An Investigation Of Interaction Effects Through The Lens Of Self-Determination Theory, Nong Vuong Phi, Kung Don Ye, Feng Ming Tsai, Hsiao Chao Hsieh, Shiou-Yu Chen

Journal of Marine Science and Technology–Taiwan

Enhancing employee well-being is a primary goal for enterprise sustainable development. Although seafarers represent a major human resource in the maritime industry, the distinctive demands of their profession often compel them to compromise on certain elements in fulfilling their basic psychological needs, thereby contributing to mental health challenges. Recently, COVID-19 and its associated border control measures have prolonged the voyages of seafarers, drawing public attention to the topic of seafarer well-being. In this study, self-determination theory was used to explore the effects of autonomy, competence, and relatedness as fundamental psychological needs on seafarer well-being. After the independent effects of these …

Applying Data-Limited Assessment Methods To Charter Logbook Length Data, Brett Crisafulli, Sybrand Alex Hesp, David Fairclough, Emily A. Fisher, Paul D. Lewis, Jeffrey V. Norriss, Corey B. Wakefield, Fabian Trinnie, Stephen J. Newman

Fisheries Research Reports

Marine waters along the Western Australian coastline are characterised by low ecosystem productivity and high species diversity of fishes. With over 3,000 known species comprising estuarine, nearshore, demersal and pelagic fishes in the region, many contribute to important commercial and recreational fisheries (Lenanton et al. 1991; Molony et al. 2011; Newman et al. 2018). As it is logistically and economically infeasible to conduct intensive monitoring and high-level stock assessments of all exploited fish species in Western Australia, indicator species are used to assess the sustainability of suites of species of biological and ecological similarity, for optimal use of available resources …

Stable Isotope Analysis Of Antipatharian Diets From The Northwestern Gulf Of Mexico, Keir J. Macartney, Victoria Salinas, Zachary Rivera, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

Antipatharians, or black corals, form a key component of the benthic fauna found throughout the Gulf of Mexico (GOM). In the northwestern GOM, they are a common member of the communities found on the natural relic coral—algal banks known as the South Texas Banks as well as on artificial reefs. They are known to provide important habitat for many ecologically and economically important species in the area but are relatively understudied. Here we present a study on their trophic ecology using stable isotope analysis of carbon and nitrogen from 2 species, Antipathes atlantica and Stichopathes luetkeni from a mesophotic artificial …

Psychological And Social Well-Being Of Bony Fishes In Zoos And Aquariums, Ronald G. Oldfield, Patrick Bonano

Animal Sentience

Research on the behaviour of animals in zoos has been conducted for decades, and observations have provided information that has improved the psychological and social well-being of animals. However, research on fishes in zoos and aquariums seems to be lacking. Here, we assess the current state of research on fishes in zoos and aquariums by surveying the peer-reviewed literature. Our assessment differs from previous surveys in that we examine the taxonomic classes Chondrichthyes (sharks and rays) and Osteichthyes (bony fishes) separately. Our survey finds that bony fishes have been drastically underrepresented in zoo journals, more drastically than chondrichthyans, revealing an …

Spatial Characterisation And Drivers Of Catch And Effort In Highly Specialised Recreational Pelagic Fisheries, Shannon J. Burchert, Ebenezer Afrifa-Yamoah, Karina L. Ryan, Ute Mueller, Glenn A. Hyndes

Research outputs 2022 to 2026

Large pelagic finfish are highly mobile, distributed across broad geographical scales, and often targeted by both commercial and recreational sectors. Fishing effort in these fisheries is variable due to seasonal patterns in fish behaviour and accessibility of fishing locations. Similarly, fisher behaviour and access are likely to differ within the recreational sector, between private boat-based fishing and charter (or for hire) fishing. Here, we compare spatio-temporal patterns in catch per unit effort (CPUE), effort (boat days) and catch (total catch per fishing party) for private boat-based and charter fishing, and identify environmental variables that may influence those patterns, for two …

Spatial And Environmental Drivers Of Temperate Estuarine Archaeal Communities, Emily Cocksedge, Michael Stat, Alessandra L. Suzzi, Troy F. Gaston, Megan J. Huggett

Research outputs 2022 to 2026

Archaea play a crucial role in the global biogeochemical cycling of elements and nutrients, helping to maintain the functional stability of estuarine systems. This study characterised the abundance and diversity of archaeal communities and identified the environmental conditions shaping these microbial communities within six temperate estuaries along approximately 500 km of the New South Wales coastline, Australia. Estuarine sediments were found to exhibit significantly higher species richness than planktonic communities, with representative sequences from the Crenarchaeota phylum characterising each environment. Ordinate analyses revealed catchment characteristics as the strongest drivers of community variability. Our results also provide evidence supporting distance-decay patterns …

An Optimal Schedule Recovery Model For Transportation Carriers Under Uncertain Typhoon Disruption Periods, Yi-Chun Chen, Shangyao Yan

Journal of Marine Science and Technology–Taiwan

Due to the unsettled weather conditions caused by typhoons, it is not possible to forecast the time when a typhoon will arrive or depart accurately. The uncertainty regarding the duration of typhoon disruptions makes it challenging for transportation carriers to efficiently adjust their schedules. In this study, to deal with the problem of airline fleet rerouting, flight rescheduling, and passenger reassignment for uncertain disruption periods caused by a typhoon, we utilize network flow techniques with the concept of probability to construct a stochastic model for minimizing the total operating costs. A heuristic algorithm based on the divide-and-conquer technique is adopted …

A Generalized Machine Learning Model For Long-Term Coral Reef Monitoring In The Red Sea, Justin J. Gapper, Surendra Maharjan, Wenzhao Li, Erik Linstead, Surya Prakash Tiwari, Mohamed A. Qurban, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Coral reefs, despite covering less than 0.2 % of the ocean floor, harbor approximately 35 % of all known marine species, making their conservation critical. However, coral bleaching, exacerbated by climate change and phenomena such as El Niño, poses a significant threat to these ecosystems. This study focuses on the Red Sea, proposing a generalized machine learning approach to detect and monitor changes in coral reef cover over an 18-year period (2000–2018). Using Landsat 7 and 8 data, a Support Vector Machine (SVM) classifier was trained on depth-invariant indices (DII) derived from the Gulf of Aqaba and validated against ground …

Prediction Of Mooring System Characteristics Of The Floating Barge Using Deep Neural Networks, Janghoon Seo, Dong-Woo Park

Journal of Marine Science and Technology–Taiwan

The present study establishes deep learning models to predict the tensions and inclinations of mooring lines of a floating barge and verifies applicability of these models. Hydrodynamic and mooring analyses are conducted on the dataset used for the deep learning models. Three types of neural network models include a deep neural network (DNN) with input data representing the six degrees of freedom motions of a floating barge, convolutional neural network (CNN) with input images of the floating barge and mooring lines on a horizontal plane, and hybrid neural network (HNN) that consolidates the characteristics of DNN and CNN models. The …

Characteristics, Protection, And Utilization Of Marine Ecosystems With Chinese Characteristics, Xin Liu, Si Zhang

Bulletin of Chinese Academy of Sciences (Chinese Version)

Chinese President Xi Jinping proposed the concept of “Martime Community with a Shared Future”. The ocean circulation, the mid-oceanic ridge, and the thermal lava flows constitute the dynamical systems of the maritime community, while the ocean circulation and the material and energy cycles are essential to the global ocean’s connectivity, the mid-oceanic ridge and its thermal lava flows underlie global submarine connectivity, and the marine circulation system, together with the marginal sea submarine system, supports the highly complex biological habitats in the China Sea. Coral island reefs and cold seeps constitute the most characteristic marine ecosystems in China. Conducting research, …

Editorial: Critical Praxis And The Social Imaginary For Sustainable Food Systems, Max Stephenson Jr., Kim Niewolny, Laura Zanotti, Anna Erwin

School of Earth, Environmental, & Marine Sciences Faculty Publications

No abstract provided.