Marine Biology Commons^™

Performance Evaluation Of The Self-Organizing Map For Feature Extraction, Yonggang Liu, Robert H. Weisberg, Christopher N. K. Mooers

Marine Science Faculty Publications

Despite its wide applications as a tool for feature extraction, the Self‐Organizing Map (SOM) remains a black box to most meteorologists and oceanographers. This paper evaluates the feature extraction performance of the SOM by using artificial data representative of known patterns. The SOM is shown to extract the patterns of a linear progressive sine wave. Sensitivity studies are performed to ascertain the effects of the SOM tunable parameters. By adding random noise to the linear progressive wave data, it is demonstrated that the SOM extracts essential patterns from noisy data. Moreover, the SOM technique successfully chooses among multiple sets of …

Summer Transport Estimates Of The Kamchatka Current Derived As A Variational Inverse Of Hydrophysical And Surface Drifter Data, G.G. Panteleev, P. Stabeno, V.A. Luchin, Dmitri A. Nechaev, M. Ikeda

Faculty Publications

The quasistationary summer Bering Sea circulation is reconstructed as a variational inverse of the hydrographic and atmospheric climatologies, transport estimates through the Bering Strait, and surface drifter data. Our results indicate the splitting of the Kamchatka Current in the vicinity of the Shirshov Ridge. This branching is in agreement with independent ARGO drifter observations. It was also found, that transport of the Kamchatka Current gradually increases downstream from 14 Sv in the Olyutorsky Gulf to 24 Sv in the Kamchatka Strait, which is twice higher than previous estimates.

Fisheries Research Report No. 155 - Identification Of Western Australian Grey Nurse Shark Aggregation Sites., J. Chidlow, Daniel J. Gaughan, Rory Mcauley

Fisheries Research Reports

Final report to the Australian Government, Department of the Environment and Heritage

The first phase of this project involved a desktop study to broadly identify areas where Western Australian Grey Nurse Sharks potentially aggregate for further investigation with field surveys. These areas were identified from information obtained from commercial shark fishers, previously unpublished research data, as well as anecdotal reports of sightings or captures from recreational divers and fishers, professional dive stores, dive clubs and charter boat operators. A total of 25 survey areas were identified during the desktop study, 16 of which were in depths less than 30m and …

Geochemistry Of Benthic Foraminifera As An Environmental Indicator: A Study From Multiple Hydrographic Regimes, Chandranath Basak

All-Inclusive List of Electronic Theses and Dissertations

The geochemistry (stable isotopes and Lracc clements) or living (sLaincd) calcareous benthic foraminifera was compared with ambient botlom water stable isotope values to provide modern analog conditions and calibrations for environmental and paleoenvironmental assessments. Stable isotope values of live (stained) bcnthic foraminifera were investigated from push core and multicorer samples from the North Pacific (on the Aleutian margin, water depth 1988m) and the South Australian Bight (water depth 2476m and 1634m). Living benthic foraminifera specimens collected from contaminated sites in the Venice Lagoon were analyzed for trace elements. Both the isotopic and the trace element study involved interpretation of modern …

Fisheries Occasional Publication No. 35 - Rock Lobster Processor Licensing Arrangements (Discussion Paper), Department Of Fisheries Western Australia

Fisheries Occasional Publications

On 28 March 2002, the Minister for Agriculture, Forestry and Fisheries, Hon Kim Chance MLC, announced the Government's position on National Competition Policy (NCP) insofar as this policy related to licensing of western rock lobster processors (hitherto referred to as 'rock lobster processors' or simply as 'processors'), as governed by the provisions of the Fish Resources Management Act 1994 (FRMA).

In making the announcement, the Minister also undertook to further "review the potential costs and risks of deregulation" ..."in 2006", when they "are better understood by both Government and industry itself'.

This document is the first stage of the review …

Substituting Otoliths For Chemical Analyses: Does Sagitta = Lapillus?, Nathan G. Smith, Cynthia M. Jones

OES Faculty Publications

Chemical analysis of fish otoliths has become an important technique in fisheries science with widespread applications. Most research up to this point has focused predominantly on sagittal otoliths, but the underlying assumptions may also apply to lapilli. The goal of this study was to determine whether lapilli and sagittae have the same otolith chemistry and whether one can be substituted for the other for solution-based chemical analysis in wild-captured fish. We compared the stable isotope chemistry (δ13C and δ18O) of paired sagittae and lapilli of juvenile spotted seatrout Cynoscion nebulosus collected from Chesapeake Bay seagrass beds in 2002. …

Vittatispora, A New Melanosporaceous Genus From Indian Soil, Preeti Chaudhary, Jinx Campbell, David L. Hawksworth, Kedarnath N. Sastry

Faculty Publications

Vittatispora coorgii gen. sp. nov., isolated from soil in India, is described and illustrated. The fungus has morphological characteristics of the genera Melanospora, Sphaerodes and Syspastospora. The most striking feature is the presence of a thick hyaline ridge along the vertical axis of the lemonshaped ascospores wall. Perithecia also have a long neck composed of adhering hyphae, similar to that of Syspatospora. Phylogenetic studies on the 28S rDNA indicate it is closely related to Melanospora and Sphaerodes and belongs in the Ceratostomataceae. The new genus is based on the distinctive morphology and phylogenetic analyses. The fungus grew in culture only …

Impervious Surface Mapping In Coastal New Hampshire (2005), David G. Justice, Fay A. Rubin

PREP Reports & Publications

Estimates of impervious surface acreage in 2005 were generated and compared to prior estimates for 1990 and 2000 for a 48-town region in coastal New Hampshire, including the 42 towns within Zones A and B of the New Hampshire Estuaries Project (NHEP) area. The estimates were based on applying both traditional and subpixel image classification techniques to 30-meter Landsat 5 Thematic Mapper (TM) satellite data, acquired 3 October 2005. The classifications indicated that impervious surface acreage increased from 4.3% (31,233 acres) in 1990, to 6.3% (45,445 acres) in 2000, to 7.4% (53,408 acres) in 2005. At the subwatershed level, the …

Coastal Conservation Lands Update (2005), Fay A. Rubin, Christopher M. Phaneuf

PREP Reports & Publications

The Complex Systems Research Center (CSRC) at the University of New Hampshire has developed, implemented, and coordinated the GRANIT GIS clearinghouse since its inception in the mid 1980’s. One of the primary data sets maintained by CSRC and served through the clearinghouse is the Conservation and Protected Lands Data Layer. This data set contains a digital record of parcels of land of two or more acres that are mostly undeveloped and are protected from future development. Smaller parcels that adjoin previously mapped parcels or represent unique features, such as a bog or state-owned boat ramp, may also be included in …

An Evaluation Of The Along Track Reef Imaging System (Atris) For Efficient Reef Monitoring And Rapid Groundtruthing Of Eaarl Lidar, Nicole O. Caesar

USF Tampa Graduate Theses and Dissertations

The Along-Track Reef-Imaging System (ATRIS) is a vessel-mounted, digital camera, depth sounder and Global Positioning System (GPS) package that facilitates the rapid capture of underwater images in shallow-water benthic environments. This technology has the potential to collect ecologically significant data, particularly in benthic habitats less than 10 m in depth, with better location referencing and in less time than is required for surveys carried out by Scuba divers. In October 2004, ATRIS was tested coincidently with SCUBA-assisted video along transects on five patch reefs in Biscayne National Park. Images from both data sets were subsampled, viewed, and benthic cover under …

Aquaculture Of Live Rocks, Live Sand, Coral And Associated Products. A Discussion And Draft Policy Paper., Department Of Fisheries.

Fisheries Management Papers

The Department of Fisheries has prepared this discussion paper to outline the position and needs of the emerging industry and the proposed management arrangements and policies in place. Therefore, the key objectives of this document are to outline and develop: The key information about live rock, sand and coral aquaculture that is relevant to the development of an industry in WA; and A draft policy for the management of live rock, sand and coral aquaculture, on both onshore and offshore licence sites.

The Influence Of High Temperature And Two Hurricanes On The Success Of Late Season Loggerhead Nests In Broward County, Florida, In 2005, Stefanie Ouellette, Curtis M. Burney

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The success of loggerhead nests, defined as the percentage of the eggs per nest resulting in live released hatchlings, declined to unusually low levels during the latter part of the 2005 season. The mean successes were 81.1, 61.1, 32.8 and 13.4 percent for nests deposited in May, June, July and August, respectively. Many eggs from the August nests appeared to be unusually dried. There was a significant inverse relationship (P < .0001) between the daily air temperature anomaly on the day of nest deposition and the average daily success rate of loggerhead nests in 2005. The daily temperature anomaly is the deviation of the average air temperature each day from the daily climatological average values. There was also a highly significant inverse relationship between maximum daily air temperature and nest success rate in 2005. These relationships were not found in the previous two years. The actual average temperature during August in 2005 was 29.7°C, compared to 28.9 and 29.2°C in 2004 and 2003, respectively. The 2005 average was statistically different from the other two years (one way ANOVA, P < .001) and also from the climatological average temperature of 28.6°C. Mean daily success rates were less than 50 percent for nests deposited during the 50 days preceding the impact of Hurricane Katrina on August 25. Nests deposited in the first two weeks of August were also impacted by Hurricane Rita. Mean daily success rates were less than 10 percent on 7 days during this period.

Testing The Effectiveness Of Pollution Control Measures At The South Dade Landfill: The Reduction Of Un-Ionized Ammonia In Landfill Leachate, Matt Mitchell

HCNSO Student Theses and Dissertations

The purpose of this research was to evaluate the overall effectiveness of the pollution control measures in place at the South Dade Landfill, located in Miami, Florida. Pollution control measures in place at the landfill include the lining and capping of landfill cells, a landfill wetland retention basin and a groundwater remediation interceptor trench (GWRIT). This study was performed over a ten (10) month span beginning in October, 2002 and ending in July, 2003. This study dealt specifically with the effectiveness of the GWRIT and landfill wetlands in reducing the amount of un-ionized ammonia (NH₃) in the landfill …

Spring 2006, Nsu Oceanographic Center

Currents

No abstract provided.

Temperature Tolerance In Crustaceans: Critical Temperatures And The Heart, Lindsay Haupt (Murray-Miller)

All Theses And Dissertations

At certain upper and lower threshold temperatures (critical temperatures (Tc) crustaceans switch to anaerobic metabolism despite sufficient oxygen availability in the environment. I tested the hypothesis that failure of the heart at critical temperatures leads to insufficient oxygen delivery and subsequent anaerobiosis in peripheral tissues.

I exposed rock crabs, Cancer irroratus, as whole animals, and their buffer-perfused semi-isolated hearts to a progressive temperature increase, while monitoring heart rate and lactate accumulation. The whole animals heart rate increased with temperature following a Q₁₀ of 2.8. An abrupt decline in heart rate occurred at 25°C and lactate accumulation occurred between …

Antiestrogens Inhibit Xenoestrogen-Induced Brain Aromatase Activity But Do Not Prevent Xenoestrogen-Induced Feminization In Japanese Medaka (Oryzias Latipes), Adam J. Kuhl, Marius Brouwer

Faculty Publications

In fish, exposure to estrogen or estrogen-mimicking chemicals (xenoestrogeus)during a critical period of development can irreversibly invert sex differentiation. In medaka, a male-to-female reversal upon exposure to a xenoestrogen is accompanied by an increase in brain aromatase expression and activity. However, whether this increase is the direct cause of sex reversal is unknown. In this study we further examined the role brain aromatase plays in genesis of developmental abnormalities in response to endocrine-disrupting chemicals (EDCs). Further, the effects of a mixture of apparent antagonistic environmentally relevant EDCs on development were examined to determine if their combined actions could lessen each …

2005 Great Bay Organic Nitrogen (Pon & Don) And Light Extinction (Par) Monitoring Program, Jonathan Pennock

PREP Reports & Publications

Nitrogen is most often considered to be the limiting nutrient for plant growth in marine waters. As a result, knowledge of nitrogen loading and ambient water-column concentrations are considered to be critical to understanding the response of aquatic ecosystems to nutrient over-enrichment—a process known as eutrophication when it results in the excess production of organic matter. Plant production in many estuarine systems may also be limited by light availability as a result of high levels of turbidity in the water resulting from sediments, dissolved organic matter, and phytoplankton in the water column. Light limitation resulting from human-induced increases in turbidity …

2005 Great Bay Water Quality (Datasonde) Monitoring Program, Jonathan Pennock

PREP Reports & Publications

In situ water quality assessment has become an important source of data for monitoring, research and management activities in estuaries nationwide. As part of the National Estuarine Research Reserve System, the Great Bay System-Wide Monitoring Program (SWMP) produces in situ water quality data for four sites in and around Great Bay. This project extends the SWMP program to include year-round in situ data for a station at the University of New Hampshire Coastal Marine Lab pier at the mouth of the Piscataqua River and summmer data for a station in the Salmon Falls (SF) River. This suite of stations provides …

Continued Wetlands Assessment, Inventory And Prime Wetlands Designation In Hampton And Hampton Falls, Hampton Falls Conservation Commission

PREP Reports & Publications

The purpose of this project was to continue to provide educational efforts on wetlands functions and values, prime wetlands designation, aerial and on-the-ground inventory findings, wildlife habitat, and New Hampshire’s Prime Wetlands laws and rules for the communities of Hampton and Hampton Falls, which was the project focus area. The project incorporated the first phase (phase I) of this wetland inventory report, which focused on the Taylor River Watershed. That initial assessment included the Taylor River as it flows through both Hampton and Hampton Falls, a portion of Ash Brook and Old River as it flows through Hampton, and Grapevine …

Assessment Of Image Analysis As A Measure Of Scleractinian Coral Growth, Steven K. Gustafson

USF Tampa Graduate Theses and Dissertations

Image analysis was used to measure basal areas of selected colonies of Montastraea annularis and Porites astreoides, following the colonies over a three-year period from 2002 to 2004. Existing digital images of permanently-marked quadrats in the Caye Caulker Marine Reserve, Belize, were selected based on image quality and availability of images of selected quadrats for all three years. Annual growth rates were calculated from the basal-area measurements. Mean growth rates (radial skeletal extension) for M. annularis and P. astreoides were 0.02 cm yr-1 and -0.20 cm yr-1, respectively. Basal area measurements demonstrated a large degree of variability. Increases were approximately …

Reproducibility Of Geochemical And Climatic Signals In The Atlantic Coral Montastraea Faveolata, Jennifer M. Smith, Terrence M. Quinn, Kevin P. Helmle, Robert B. Halley

Marine Science Faculty Publications

Monthly resolved, 41‐year‐long stable isotopic and elemental ratio time series were generated from two separate heads of Montastraea faveolata from Looe Key, Florida, to assess the fidelity of using geochemical variations in Montastraea, the dominant reef‐building coral of the Atlantic, to reconstruct sea surface environmental conditions at this site. The stable isotope time series of the two corals replicate well; mean values of δ¹⁸O and δ¹³C are indistinguishable between cores (compare 0.70‰ versus 0.68‰ for δ¹³C and −3.90‰ versus −3.94‰ for δ¹⁸O). Mean values from the Sr/Ca time series differ by …

Nhep Environmental Indicator Report: Critical Habitats And Species 2006, Phil Trowbridge

PREP Reports & Publications

The New Hampshire Estuaries Project (NHEP) is part of the U.S. Environmental Protection Agency’s National Estuary Program, which is a joint local/state/federal program established under the Clean Water Act with the goal of protecting and enhancing nationally significant estuarine resources. The NHEP is funded by the EPA and is administered by the University of New Hampshire. The NHEP’s Comprehensive Conservation and Management Plan for New Hampshire’s estuaries was completed in 2000 and implementation is ongoing. The Management Plan outlines key issues related to management of New Hampshire's estuaries and proposes strategies (Action Plans) that are expected to preserve, protect, and …

Nhep Environmental Indicator Report: Water Quality 2006, Phil Trowbridge

PREP Reports & Publications

The New Hampshire Estuaries Project (NHEP) is part of the U.S. Environmental Protection Agency’s National Estuary Program, which is a joint local/state/federal program established under the Clean Water Act with the goal of protecting and enhancing nationally significant estuarine resources. The NHEP is funded by the EPA and is administered by the University of New Hampshire. The NHEP’s Comprehensive Conservation and Management Plan for New Hampshire’s estuaries was completed in 2000 and implementation is ongoing. The Management Plan outlines key issues related to management of New Hampshire's estuaries and proposes strategies (Action Plans) that are expected to preserve, protect, and …

Southeast Florida Coral Reef Evaluation And Monitoring Project 2005 Year 3 Final Report, Jennifer Wheaton, Carl Beaver, Walter Jaap, Michael Callahan, Selena Kupfner, Shannon Wade, David S. Gilliam, B. D. Ettinger, Daniel P. Fahy, Shaun M. Gill, Lindsey Habakuk Klink, Jamie A. Monty, M. A. Philips, Lauren F. Shuman, Nicole R. Stephens, Brian K. Walker, Joanna C. Walczak, Richard E. Dodge, Tim Mcintosh, Steven Blair, Kenneth Banks, Louis E. Fisher, David Stout, Joe Ligas, Janet Phipps

Marine & Environmental Sciences Faculty Reports

No abstract provided.

A Fish Habitat Classification Model For The Upper And Middle Sections Of The Bay Of Quinte, Lake Ontario, C. K. Minns, Andrea Bernard, C. N. Bakelaar, M. Ewaschuk

Marine & Environmental Sciences Faculty Reports

A fish habitat classification model was developed and applied to the upper and middle sections of the Bay of Quinte, Lake Ontario. Available habitat inventories were assembled in a GIS database, bringing bathymetric, shoreline, substrate, and vegetation data together in a series of layers. The classification model was developed in four steps. In the first step, the Defensible Methods (DM) model developed by Minns et al. (2000) was used to estimate suitability values in all habitat patches for a set of nine fish groups each with three life stages. The fish groups were formed from the assemblage of fish species …

Hydrodynamic Mediation Of Density-Dependent Growth And Adult-Juvenile Interactions Of A Spionid Polychaete, Brent T. Hentschel, Amy A. Larson

Environmental Science and Management Faculty Publications and Presentations

Abstract We performed an experiment to test the effects of adult density on the growth rates of juvenile Polydora cornuta. Our experiment was performed in three identical counter-rotating annular flumes, each set to one of three different flow speeds for a period of 3 d (U 5mm = 3, 6, or 12 cm s^-1 , where U_5mm = velocity measured 5 mm above bottom). We implanted replicate vials containing a premeasured juvenile P. cornuta and either 0, 2, or 5 adults into a 2-cm layer of sediment in the flume. The relative growth rates of the juveniles …

Observing Seasonal Steric Sea Level Variations With Grace And Satellite Altimetry, Don P. Chambers

Marine Science Faculty Publications

Sea level rises and falls as the temperature and salinity of the water column varies, which is known as steric sea level. Sea level also changes as water mass is redistributed within the ocean or is added or removed. Satellite radar altimeters measure the combination of both effects, while the Gravity Recovery and Climate Experiment (GRACE) was designed to measure time variable gravity caused by movement of water mass. Theoretically, altimetry and GRACE data can be combined in order to compute the steric sea level variations. We test this by combining current GRACE and Jason 1 altimeter data and comparing …

Comparison Of The Barnacle, Balanus Amphitrite, In Different Environments, Katsura Mastuda

Loma Linda University Electronic Theses, Dissertations & Projects

The Salton Sea is a saline lake located centrally in the Colorado Desert, California. Salinity as well as nutrients of the Sea have been increasing since 1907, thus it is currently facing ecological collapse. The barnacle, Balanus amphitrite saltonensis at the Salton Sea was once thought to be a subspecies of B. amphitrite due to distinctive morphological differences between populations at the Sea and San Diego Bay. However, only one subspecies, Balanus amphitrite amphitrite, currently exists based on genetic studies. My study investigates physiological, survival, and morphological differences of B. amphitrite populations from the Salton Sea and San Diego …

Ambient Rivers Monitoring In The Great Bay Estuary Watershed 2005, Natalie Landry, Stephanie Fardy

PREP Reports & Publications

The Department of Environmental Services (DES) received funding from the New Hampshire Estuaries Project (NHEP) to conduct monitoring activities in 2005. The activities described in this report were led by the DES Watershed Assistance Section and involved water monitoring in tidal tributaries. Other DES staff conducted laboratory analyses. These monitoring activities were completed with the overall purpose of improving the understanding of water quality trends. The Department of Environmental Services completed all tasks as planned. This report includes the sample collection information, field and laboratory data, and quality assurance information. Data summaries and interpretations will come at a later time …

Zonal Patterns Of Delta C-13, Delta N-15 And Po-210 In The Tropical And Subtropical North Pacific, Min Chen, Laodong Guo, Qiang Ma, Yusheng Qiu, Run Zhang, E Lv, Yipu Huang

Faculty Publications

Nitrogen fixation process may supply a significant fraction of bioavailable nitrogen to surface waters, increase the oceanic sequestration of atmospheric CO2, and alter the distribution of geochemical parameters. We report a zonal pattern of delta N-15 and delta C-13 in particulate organic matter (POM), and ratios of particulate Po-210 to dissolved Po-210 along a transect through the subtropical and tropical North Pacific. Both N-15 and Po-210 signals indicated an enhanced N-2 fixation in the northwestern subtropical North Pacific. The eastward decrease of N-2 fixation along this transect testified the role of aeolian Fe and P in controlling marine N-2 fixation. …