Marine Biology Commons^™

Comparison Of A Smartfin With An Infrared Sea Surface Temperature Radiometer In The Atlantic Ocean, Robert J. W. Brewin, Werenfrid Wimmer, Phillip J. Bresnahan, Tyler Cyronak, Andreas J. Andersson, Giorgio Dall’Olmo

Marine & Environmental Sciences Faculty Articles

The accuracy and precision of satellite sea surface temperature (SST) products in nearshore coastal waters are not well known, owing to a lack of in-situ data available for validation. It has been suggested that recreational watersports enthusiasts, who immerse themselves in nearshore coastal waters, be used as a platform to improve sampling and fill this gap. One tool that has been used worldwide by surfers is the Smartfin, which contains a temperature sensor integrated into a surfboard fin. If tools such as the Smartfin are to be considered for satellite validation work, they must be carefully evaluated against state-of-the-art techniques …

An Indo-Pacifc Coral Spawning Database, Andrew H. Baird, James R. Guest, Alasdair J. Edwards, Andrew G. Bauman, Jessica Bouwmeester, Hanaka Mera, David Abrego, Mariana Alvera-Noriega, Russel C. Babcock, Miguel B. Barbosa, Victor Bonito, John Burt, Patrick C. Cabaitan, Ching-Fong Chang, Suchana Chavanich, Chaolun A. Chen, Chieh-Jhen Chen, Wei-Jen Chen, Fung-Chen Chung, Sean R. Connolly, Vivian R. Cumbo, Maria Dornelas, Christopher Doropoulos, Gal Eyal, Lee Eyal-Shaham, Nur Fadli, Joana Figueiredo, Jean-François Flot, Sze-Hoon Gan, Elizabeth Gomez, Erin M. Graham, Mila Grinblat, Nataly Gutiérrez-Isaza, Saki Harii, Peter L. Harrison, Masayuki Hatta, Nina Ann Jin Ho, Gaetan Hoarau, Mia Hoogenboom, Emily J. Howells, Akira Iguchi, Naoko Isomura, Emmeline A. Jamodiong, Suppakarn Jandang, Jude Keyse, Seiya Kitanobo, Narinratana Kongjandtre, Chao-Yang Kuo, Charlon Ligson, Che-Hung Lin, Jeffrey Low, Yossi Loya, Elizaldy A. Maboloc, Joshua S. Madin, Takuma Mezaki, Choo Min, Masaya Morita, Aurelie Moya, Su-Hwei Neo, Matthew R. Nitschke, Satoshi Nojima, Yoko Nozawa, Srisakul Piromvaragorn, Sakanan Plathong, Eneour Puill-Stephan, Kate Quigley, Catalina Ramirez-Portilla, Gerard Ricardo, Kazuhiko Sakai, Eugenia Sampayo, Tom Shlesinger, Leony Sikim, Chris Simpson, Carrie A. Sims, Frederic Sinniger, Davies A. Spiji, Tracy Tabalanza, Chung-Hong Tan, Tullia I. Terraneo, Gergely Torda, James True, Karenne Tun, Kareen Vicentuan, Voranop Viyakarn, Zarinah Waheed, Selina Ward, Bette Willis, Rachael M. Woods, Erika S. Woolsey, Hiromi H. Yamamoto, Syafyudin Yusuf

Marine & Environmental Sciences Faculty Articles

The discovery of multi-species synchronous spawning of scleractinian corals on the Great Barrier Reef in the 1980s stimulated an extraordinary effort to document spawning times in other parts of the globe. Unfortunately, most of these data remain unpublished which limits our understanding of regional and global reproductive patterns. The Coral Spawning Database (CSD) collates much of these disparate data into a single place. The CSD includes 6178 observations (3085 of which were unpublished) of the time or day of spawning for over 300 scleractinian species in 61 genera from 101 sites in the Indo-Pacific. The goal of the CSD is …

Thermal Acclimation Of Tropical Coral Reef Fishes To Global Heat Waves, Jacob L. Johansen, Lauren E. Nadler, Adam Habary, Alyssa J. Bowden, Jodie Rummer

Marine & Environmental Sciences Faculty Articles

As climate-driven heat waves become more frequent and intense, there is increasing urgency to understand how thermally sensitive species are responding. Acute heating events lasting days to months may elicit acclimation responses to improve performance and survival. However, the coordination of acclimation responses remains largely unknown for most stenothermal species. We documented the chronology of 18 metabolic and cardiorespiratory changes that occur in the gills, blood, spleen, and muscles when tropical coral reef fishes are thermally stressed (+3.0°C above ambient). Using representative coral reef fishes (Caesio cuning and Cheilodipterus quinquelineatus) separated by >100 million years of evolution and …

Evaluating The Use Of Marine Protected Areas By Endangered Species: A Habitat Selection Approach, Kelsey E. Roberts, Brian J. Smith, Derek Burkholder, Kristen M. Hart

Marine & Environmental Sciences Faculty Articles

1. Optimizing the design of marine protected area (MPA) networks for the conservation of migratory marine species and their habitats involves a suite of important considerations, such as appropriate scale requirements and the distribution of anthropogenic impacts. Often, a fundamental component of the conservation planning process is delineating areas of high use or high biodiversity within a region of interest.

2. However, basing conservation strategies off merely the number of individuals in an ecosystem is outdated and potentially subject to arbitrary thresholds. To be effective at protecting marine megafauna, MPAs would ideally encompass habitats used by focal species. Through satellite-tracking …

Late Afternoon Seasonal Transition To Dissolution In A Coral Reef: An Early Warning Of A Net Dissolving Ecosystem?, Laura Stoltenberg, Kai G. Schulz, Coulson A. Lantz, Tyler Cyronak, Bradley D. Eyre

Marine & Environmental Sciences Faculty Articles

There are concerns that reefs will transition from net calcifying to net dissolving in the near future due to decreasing calcification and increasing dissolution rates. Here we present in situ rates of net ecosystem calcification (NEC) and net ecosystem production (NEP) on a coral reef flat using a slack-water approach. Up until dusk, the reef was net calcifying in most months but shifted to net dissolution in austral summer, coinciding with high respiration rates and a lower aragonite saturation state (Ω_arag). The estimated sediment contribution to NEC ranged from 8 – 21 % during the day and 45 …

Species Sensitivity Assessment Of Five Atlantic Scleractinian Coral Species To 1-Methylnaphthalene, Dorothy-Ellen A. Renegar, Nicholas Turner

Marine & Environmental Sciences Faculty Articles

Coral reefs are keystone coastal ecosystems that are at risk of exposure to petroleum from a range of sources, and are one of the highest valued natural resources for protection in Net Environmental Benefit Analysis (NEBA) in oil spill response. Previous research evaluating dissolved hydrocarbon impacts to corals reflected no clear characterization of sensitivity, representing an important knowledge gap in oil spill preparedness related to the potential impact of oil spills to the coral animal and its photosymbiont zooxanthellae. This research addresses this gap, using a standardized toxicity protocol to evaluate effects of a dissolved reference hydrocarbon on scleractinian corals. …

Autonomous In Situ Calibration Of Ion‐Sensitive Field Effect Transistor Ph Sensors, Philip J. Bresnahan, Yuichiro Takeshita, Taylor Wirth, Todd R. Martz, Tyler Cyronak, Rebecca Albright, Kennedy Wolfe, Joseph K. Warren, Keaton Mertz

Marine & Environmental Sciences Faculty Articles

Ion‐sensitive field effect transistor‐based pH sensors have been shown to perform well in high frequency and long‐term ocean sampling regimes. The Honeywell Durafet is widely used due to its stability, fast response, and characterization over a large range of oceanic conditions. However, potentiometric pH monitoring is inherently complicated by the fact that the sensors require careful calibration. Offsets in calibration coefficients have been observed when comparing laboratory to field‐based calibrations and prior work has led to the recommendation that an in situ calibration be performed based on comparison to discrete samples. Here, we describe our work toward a self‐calibration apparatus …

Unexpected Role Of Communities Colonizing Dead Coral Substrate In The Calcification Of Coral Reefs, Manoela Romanó De Orte, David A. Koweek, Tyler Cyronak, Yuichiro Takeshita, Alyssa Griffin, Kennedy Wolfe, Alina Szmant, Robert Whitehead, Rebecca Albright, Ken Caldeira

Marine & Environmental Sciences Faculty Articles

Global and local anthropogenic stressors such as climate change, acidification, overfishing, and pollution are expected to shift the benthic community composition of coral reefs from dominance by calcifying organisms to dominance by non-calcifying algae. These changes could reduce the ability of coral reef ecosystems to maintain positive net calcium carbonate accretion. However, relationships between community composition and calcification rates remain unclear. We performed field experiments to quantify the metabolic rates of the two most dominant coral reef substrate types, live coral and dead coral substrate colonized by a mixed algal assemblage, using a novel underwater respirometer. Our results revealed that …

Deep-Pelagic Research In The Gulf Of Mexico: Ten Years And Counting…, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

No abstract provided.

A Multidisciplinary Approach To Investigate Deep-Pelagic Ecosystem Dynamics In The Gulf Of Mexico Following Deepwater Horizon, April Cook, Andrea Bernard, Kevin M. Boswell, Heather Bracken-Grissom Dr., Marta D'Elia, Sergio Derada, Cole Easson, David English, Ron Eytan, Tamara Frank, Chuanmin Hu, Matt Johnston, Heather Judkins, Chad Lembke, Jose Lopez, Rosanna Milligan, Jon A. Moore, Brad Penta, Nina Pruzinsky, John A. Quinlan, Travis M. Richards, Isabel C. Romero, Mahmood S. Shivji, Michael Vecchione, Max D. Weber, R.J. David Wells, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

The pelagic Gulf of Mexico (GoM) is a complex system of dynamic physical oceanography (western boundary current, mesoscale eddies), high biological diversity, and community integration via diel vertical migration and lateral advection. Humans also heavily utilize this system, including its deep-sea components, for resource extraction, shipping, tourism, and other commercial activity. This utilization has had impacts, some with disastrous consequences. The Deepwater Horizon oil spill (DWHOS) occurred at a depth of ∼1500 m (Macondo wellhead), creating a persistent and toxic mixture of hydrocarbons and dispersant in the deep-pelagic (water column below 200 m depth) habitat. In order to assess the …

Global Phylogeography Suggests Extensive Eucosmopolitanism In Mesopelagic Fishes (Maurolicus: Sternoptychidae), D. J. Reese, Jan Y. Poulsen, Tracey Sutton, Paulo A. S. Cost, Mauricio F. Landaeta

Marine & Environmental Sciences Faculty Articles

Fishes in the mesopelagic zone (200–1000 m) have recently been highlighted for potential exploitation. Here we assess global phylogeography in Maurolicus, the Pearlsides, an ecologically important group. We obtained new sequences from mitochondrial COI and nuclear ITS-2 from multiple locations worldwide, representing 10 described species plus an unknown central South Pacific taxon. Phylogenetic analyses identified five geographically distinct groupings, three of which comprise multiple described species. Species delimitation analyses suggest these may represent four species. Maurolicus muelleri and M. australis are potentially a single species, although as no shared haplotypes are found between the two disjunct groups, we suggest …

Trophic Structure And Sources Of Variation Influencing The Stable Isotope Signatures Of Meso- And Bathypelagic Micronekton Fishes, Travis M. Richards, Tracey Sutton, R. J.David Wells

Marine & Environmental Sciences Faculty Articles

To better understand spatiotemporal variation in the trophic structure of deep-pelagic species, we examined the isotope values of particulate organic matter (POM) (isotopic baseline) and seven deep-pelagic fishes with similar diet compositions but contrasting vertical distributions across mesoscale features in the Gulf of Mexico using stable isotope and amino acid compound-specific isotope analyses. Species examined included four migratory (Benthosema suborbitale, Lepidophanes guentheri, Melamphaes simus, Sigmops elongatus) and three non-migratory zooplanktivorous fishes (Argyropelecus hemigymnus, Cyclothone obscura, Sternoptyx pseudobscura). Isotopic values of POM increased with depth, with meso- and bathypelagic samples characterized by higher δ C and δ N values relative to …

Potential Effect Of Bio-Surfactants On Sea Spray Generation In Tropical Cyclone Conditions, Breanna L. Vanderplow, Alexander Soloviev, Cayla W. Dean, Brian K. Haus, Roger Lukas, Muhammad Sami, Isaac Ginis

Marine & Environmental Sciences Faculty Articles

Despite significant improvement in computational and observational capabilities, predicting intensity and intensification of major tropical cyclones remains a challenge. In 2017 Hurricane Maria intensified to a Category 5 storm within 24 h, devastating Puerto Rico. In 2019 Hurricane Dorian, predicted to remain tropical storm, unexpectedly intensified into a Category 5 storm and destroyed the Bahamas. The official forecast and computer models were unable to predict rapid intensification of these storms. One possible reason for this is that key physics, including microscale processes at the air-sea interface, are poorly understood and parameterized in existing forecast models. Here we show that surfactants …

Differential Survival Of Nursery‐Reared Acropora Cervicornis Outplants Along The Florida Reef Tract, Robert Van Woesik, Raymond B. Banister, Erich Bartels, David S. Gilliam, Elizabeth A. Goergen, Caitlin Lustic, Kerry Maxwell, Amelia Moura, Erinn M. Muller, Stephanie Schopmeyer, R. Scott Winters, Diego Lirman

Marine & Environmental Sciences Faculty Articles

In recent decades, the Florida reef tract has lost over 95% of its coral cover. Although isolated coral assemblages persist, coral restoration programs are attempting to recover local coral populations. Listed as threatened under the Endangered Species Act, Acropora cervicornis is the most widely targeted coral species for restoration in Florida. Yet strategies are still maturing to enhance the survival of nursey‐reared outplants of A. cervicornis colonies on natural reefs. This study examined the survival of 22,634 A. cervicornis colonies raised in nurseries along the Florida reef tract and outplanted to six reef habitats in seven geographical subregions between 2012 …

A Brain-Infecting Parasite Impacts Host Metabolism Both During Exposure And After Infection Is Established, Lauren E. Nadler, Erik Bengston, Erika J. Eliason, Cameron Hassibi, Siri H. Helland-Riise, Ida B. Johansen, Garfield T. Kwan, Martin Tresguerres, Andrew V. Turner, Kelly L. Weinersmith, Øyvind Øverli, Ryan F. Hechinger

Marine & Environmental Sciences Faculty Articles

1. Metabolic costs associated with parasites should not be limited to established infections. Even during initial exposure to questing and attacking parasites, hosts can enact behavioural and physiological responses that could also incur metabolic costs. However, few studies have measured these costs directly. Hence, little is known about metabolic costs arising from parasite exposure.
2. Furthermore, no one has yet measured whether and how previous infection history modulates metabolic responses to parasite exposure.
3. Here, using the California killifish Fundulus parvipinnis and its brain‐infecting parasite Euhaplorchis californiensis, we quantified how killifish metabolism, behaviour and osmoregulatory phenotype changed upon acute exposure to parasite …

First Insights Into The Vertical Habitat Use Of The Whitespotted Eagle Ray Aetobatus Narinari Revealed By Pop‐Up Satellite Archival Tags, L. R. Brewster, B. V. Cahill, M. N. Burton, C. Dougan, J. S. Herr, L. Issac Norton, S. A. Mcguire, M. Pico, E. Urban-Gedamke, K. Bassos-Hull, J. P. Tyminski, R. E. Hueter, Bradley M. Wetherbee, Mahmood S. Shivji, N. Burnie, M. J. Ajemian

Marine & Environmental Sciences Faculty Articles

The whitespotted eagle ray Aetobatus narinari is a tropical to warm‐temperate benthopelagic batoid that ranges widely throughout the western Atlantic Ocean. Despite conservation concerns for the species, its vertical habitat use and diving behaviour remain unknown. Patterns and drivers in depth distribution of A. narinari were investigated at two separate locations—western North Atlantic (Islands of Bermuda) and Eastern Gulf of Mexico (Sarasota, Florida, USA). Between 2010 and 2014, seven pop‐up satellite archival tags (PSATs) were attached to A. narinari using three methods: a through‐tail suture; external tail‐band; and through‐wing attachment. Retention time ranged from 0–180 days, with tags attached via …

Tree Mode Of Death And Mortality Risk Factors Across Amazon Forests, Adriane Esquivel-Muelbert, Oliver Phillips, Roel Brienen, Sophie Fauset, Martin Sullivan, Timothy Baker, Kuo-Jung Chao, Ted Feldpausch, Emanuel Gloor, Niro Higuchi, Jeanne Houwing-Duistermaat, Jon Lloyd, Haiyan Liu, Yadvinder Malhi, Beatriz Marimon, Ben Hur Marimon Junior, Abel Monteagudo-Mendoza, Lourens Poorter, Marcos Silveira, Emilio Vilanova Torre, Esteban Alvarez Dávila, Jhon Del Aguila Pasquel, Everton Almeida, Patricia Alvarez Loayza, Ana Andrade, Luiz E. O. C. Aragão, Alejandro Araujo-Murakami, Eric Arets, Luzmila Arroyo, Gerardo A. Aymard C., Michel Baisie, Christopher Baraloto, Plínio Barbosa Camargo, Jorcely Barroso, Lilian Blanc, Damien Bonal, Frans Bongers, René Boot, Foster Brown, Benoit Burban, José Luís Camargo, Wendeson Castro, Victor Chama Moscoso, Jerome Chave, James Comiskey, Fernando Cornejo Valverde, Antonio Lola Da Costa, Nallaret Davila Cardozo, Anthony Di Fiore, Aurélie Dourdain, Terry Erwin, Gerardo Flores Llampazo, Ima Célia Guimarães Vieira, Rafael Herrera, Eurídice Honorio Coronado, Isau Huamantupa-Chuquimaco, Eliana Jimenez-Rojas, Timothy Killeen, Susan Laurance, William Laurance, Aurora Levesley, Simon L. Lewis, Karina Liana Lisboa Melgaço Ladvocat, Gabriela Lopez-Gonzalez, Thomas Lovejoy, Patrick Meir, Casimiro Mendoza, Paulo Morandi, David Neill, Adriano José Nogueira Lima, Percy Nuñez Vargas, Edmar Almeida De Oliveira, Nadir Pallqui Camacho, Guido Pardo, Julie Peacock, Marielos Peña-Claros, Maria Cristina Peñuela-Mora, Georgia Pickavance, John Pipoly Iii, Nigel Pitman, Adriana Prieto, Thomas A. M. Pugh, Carlos Quesada, Hirma Ramirez-Angulo, Simone Matias De Almeida Reis, Maxime Rejou-Machain, Zorayda Restrepo Correa, Lily Rodriguez Bayona, Agustín Rudas, Rafael Salomão, Julio Serrano, Javier Silva Espejo, Natalino Silva, James Singh, Clement Stahl, Juliana Stropp, Varun Swamy, Joey Talbot, Hans Ter Steege, John Terborgh, Raquel Thomas, Marisol Toledo, Armando Torres-Lezama, Luis Valenzuela Gamarra, Geertje Van Der Heijden, Peter Van Der Meer, Peter Van Der Hout, Rodolfo Vasquez Martinez, Simone Aparecida Vieira, Jeanneth Villalobos Cayo, Vincent Vos, Roderick Zagt, Pieter Zuidema, David Galbraith

Marine & Environmental Sciences Faculty Articles

The carbon sink capacity of tropical forests is substantially affected by tree mortality. However, the main drivers of tropical tree death remain largely unknown. Here we present a pan-Amazonian assessment of how and why trees die, analysing over 120,000 trees representing > 3800 species from 189 long-term RAINFOR forest plots. While tree mortality rates vary greatly Amazon-wide, on average trees are as likely to die standing as they are broken or uprooted—modes of death with different ecological consequences. Species-level growth rate is the single most important predictor of tree death in Amazonia, with faster-growing species being at higher risk. Within species, …

Seasonal Movements And Habitat Use Of Juvenile Smooth Hammerhead Sharks In The Western North Atlantic Ocean And Significance For Management, Ryan K. Logan, Jeremy Vaudo, Lara L. Sousa, Mark Sampson, Bradley M. Wetherbee, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Upper trophic level predators dramatically impacted by fisheries include the large-bodied hammerhead sharks, which have become species of conservation concern worldwide. Implementing spatial management for conservation of hammerhead populations requires knowledge of temporal distribution patterns and habitat use, identification of essential habitat for protection, and quantification of interactions with human activities. There is little such information for the smooth hammerhead shark, Sphyrna zygaena. We used fin-mounted satellite tags to examine the movements and habitat use of juvenile smooth hammerheads, a demographic segment particularly threatened by exploitation. Six sharks were tagged off the US mid-Atlantic and tracked for 49–441 days …

Making A Bee-Line For Food With Octopamine, Lauren E. Nadler

Marine & Environmental Sciences Faculty Articles

No abstract provided.

Thermal Stress-Related Spatiotemporal Variations In High-Latitude Coral Reef Benthic Communities, Nicholas P. Jones, Joana Figueiredo, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

High-latitude coral reef communities have been postulated as the first areas to undergo reorganisation under climate change. Tropicalisation has been identified in some high-latitude communities and is predicted in others, but it is unclear how the resident benthic taxa are affected. We conducted a long-term (2007–2016) assessment of changes to benthic community cover in relation to thermal stress duration on the Southeast Florida Reef Tract (SEFRT). Thermal stress events, both hot and cold, had acute (thermal stress duration affected benthic cover that year) and chronic (thermal stress duration affected benthic cover the following year) impacts on benthic cover. Chronic heat …

Taxonomic Richness And Diversity Of Larval Fish Assemblages In The Oceanic Gulf Of Mexico: Links To Oceanographic Conditions, Corinne R. Meinert, Kimberly Clausen-Sparks, Maëlle Cornic, Tracey Sutton, Jay R. Rooker

Marine & Environmental Sciences Faculty Articles

Biodiversity enhances the productivity and stability of marine ecosystems and provides important ecosystem services. The aim of this study was to characterize larval fish assemblages in pelagic waters of the northern Gulf of Mexico (NGoM) and identify oceanographic conditions associated with areas of increased taxonomic richness (T ) and Shannon diversity (H’). Summer ichthyoplankton surveys were conducted in the NGoM in 2015 and 2016 using neuston net (surface layer; upper 1 m) and oblique bongo net (mixed layer; 0–100 m) tows. Over 17,000 fish larvae were collected over the two-year study, and 99 families of fish larvae were present. Catch …

Opinion: Midwater Ecosystems Must Be Considered When Evaluating Environmental Risks Of Deep-Sea Mining, Jeffrey C. Drazen, Craig R. Smith, Kristina Gjerde, Steven Haddock, Glenn S. Carter, Anela Choy, Malcolm R. Clark, Pierre Dutrieux, Erica Goetze, Chris Hauton, Mariko Hatta, Julian Koslow, Astrid Brigitta Leitner, Aude Pacini, Jessica Nicole Perelman, Thomas Peacock, Tracey Sutton, Les Watling, Hiroyuki Yamamoto

Marine & Environmental Sciences Faculty Articles

No abstract provided.

Shallow-Water Coral Communities Support The Separation Of Marine Ecoregions On The West-Central Florida Gulf Coast, Brian K. Walker, Shelby Eagan, Cory Ames, Sandra Brooke, Sean Keenan, Rene Baumstark

Marine & Environmental Sciences Faculty Articles

Florida’s west coast is a 170,000 km² bedrock shelf (west Florida shelf, WFS) comprised of north-south discontinuous carbonate outcroppings extending more than 200 km from the intertidal zone to a depth of 200 m. These outcrops support diverse benthic communities, which contribute to a multi-billion dollar recreational and commercial fishing industry, yet only about 5% of their extent has been studied in detail. Benthic communities shift over a 6.5° geographic range, but the locations of these shifts are not well-defined. Previous studies have suggested a break in biogeographic regions at Tampa Bay, south at Cape Romano, and north at …

Effectiveness Of Topical Antibiotics In Treating Corals Affected By Stony Coral Tissue Loss Disease, Karen L. Neely, Kevin A. Macaulay, Emily K. Hower, Michelle A. Dobler

Marine & Environmental Sciences Faculty Articles

Since 2014, Stony Coral Tissue Loss Disease (SCTLD) has led to mass mortality of the majority of hard coral species on the Florida Reef Tract. Following the successful treatment of SCTLD lesions on laboratory corals using water dosed with antibiotics, two topical pastes were developed as vehicles to directly apply antibiotic treatments to wild corals. These pastes were tested as placebos and with additions of amoxicillin on active SCTLD lesions on multiple coral species. The effectiveness of the pastes without antibiotics (placebo treatments) was 4% and 9%, no different from untreated controls. Adding amoxicillin to both pastes significantly increased effectiveness …

Minion-In-Arms: Nanopore Sequencing To Expedite Barcoding Of Specimen-Rich Macrofaunal Samples From Autonomous Reef Monitoring Structures, Jia Jin Marc Chang, Yin Cheong Aden Ip, Andrew G. Bauman, Danwei Huang

Marine & Environmental Sciences Faculty Articles

Autonomous Reef Monitoring Structure (ARMS) are standardized devices for sampling biodiversity in complex marine benthic habitats such as coral reefs. When coupled with DNA sequencing, these devices greatly expand our ability to document marine biodiversity. Unfortunately, the existing workflow for processing macrofaunal samples (>2-mm) in the ARMS pipeline—which involves Sanger sequencing—is expensive, laborious, and thus prohibitive for ARMS researchers. Here, we propose a faster, more cost-effective alternative by demonstrating a successful application of the MinION-based barcoding approach on the >2 mm-size fraction of ARMS samples. All data were available within 3.5–4 h, and sequencing costs relatively low at approximately …

Uncovering The Role Of Symbiodiniaceae Assemblage Composition And Abundance In Coral Bleaching Response By Minimizing Sampling And Evolutionary Biases, Timothy D. Swain, Simon Lax, Vadim Backman, Luisa A. Marcelino

Marine & Environmental Sciences Faculty Articles

Background

Biodiversity and productivity of coral-reef ecosystems depend upon reef-building corals and their associations with endosymbiotic Symbiodiniaceae, which offer diverse functional capabilities to their hosts. The number of unique symbiotic partners (richness) and relative abundances (evenness) have been hypothesized to affect host response to climate change induced thermal stress. Symbiodiniaceae assemblages with many unique phylotypes may provide greater physiological flexibility or form less stable symbioses; assemblages with low abundance phylotypes may allow corals to retain thermotolerant symbionts or represent associations with less-suitable symbionts.

Results

Here we demonstrate that true richness of Symbiodiniaceae phylotype assemblages is generally not discoverable from …

Porewater Carbonate Chemistry Dynamics In A Temperate And A Subtropical Seagrass System, Theodor Kindeberg, Nicholas R. Bates, Travis A. Courtney, Tyler Cyronak, Alyssa Griffin, Fred T. Mackenzie, May-Linn Paulsen, Andreas J. Andersson

Marine & Environmental Sciences Faculty Articles

Seagrass systems are integral components of both local and global carbon cycles and can substantially modify seawater biogeochemistry, which has ecological ramifications. However, the influence of seagrass on porewater biogeochemistry has not been fully described, and the exact role of this marine macrophyte and associated microbial communities in the modification of porewater chemistry remains equivocal. In the present study, carbonate chemistry in the water column and porewater was investigated over diel timescales in contrasting, tidally influenced seagrass systems in Southern California and Bermuda, including vegetated (Zostera marina) and unvegetated biomes (0–16 cm) in Mission Bay, San Diego, USA …

Erratum: Charles G. Messing (2020) A Revision Of The Unusual Feather Star Genus Atopocrinus With A Description Of A New Species (Echinodermata: Crinoidea). Zootaxa, 4731: 471–491., Charles G. Messing

Marine & Environmental Sciences Faculty Articles

Erratum.

Fine-Scale Coral Connectivity Pathways In The Florida Reef Tract: Implications For Conservation And Restoration, Charles Frys, Antoine Saint-Amand, Matthieu Le Henaff, Joana Figueiredo, Alyson Kuba, Brian K. Walker, Jonathan Lambrechts, Valentin Vallaeys, David Vincent, Emmanuel Hanert

Marine & Environmental Sciences Faculty Articles

Connectivity between coral reefs is critical to ensure their resilience and persistence against disturbances. It is driven by ocean currents, which often have very complex patterns within reef systems. Only biophysical models that simulate both the fine-scale details of ocean currents and the life-history traits of larvae transported by these currents can help to estimate connectivity in large reef systems. Here we use the unstructured-mesh coastal ocean model SLIM that locally achieves a spatial resolution of ~100 m, 10 times finer than existing models, over the entire Florida Reef Tract (FRT). It allows us to simulate larval dispersal between the …

Survivorship And Growth In Staghorn Coral (Acropora Cervicornis) Outplanting Projects In The Florida Keys National Marine Sanctuary, Matt Ware, Eliza N. Garfield, Ken Nedimyer, Jessica Levy, Les Kaufman, William F. Precht, R. Scott Winters, Steven Miller

Marine & Environmental Sciences Faculty Articles

Significant population declines in Acropora cervicornis and A. palmata began in the 1970s and now exceed over 90%. The losses were caused by a combination of coral disease and bleaching, with possible contributions from other stressors, including pollution and predation. Reproduction in the wild by fragment regeneration and sexual recruitment is inadequate to offset population declines. Starting in 2007, the Coral Restoration Foundation™ evaluated the feasibility of outplanting A. cervicornis colonies to reefs in the Florida Keys to restore populations at sites where the species was previously abundant. Reported here are the results of 20 coral outplanting projects …