Marine Biology Commons^™

Reproductive Life History Of Fundulus Jenkensi And Comparative Development Of Five Sympatric Fundulid Species, Eric Thomas Lang

Master's Theses

Fundulus jenkinsi is recognized federally and within the state of Mississippi as a Species of Concern. Little is known about the life history of this coastal killifish, but a detailed reproductive histology study of F. jenkinsi and a diagnostic key of the early life stages of select members of Fundulidae can provide the foundation needed to accurately identify it and quantify reproductive parameters in this rare species in need of conservation. Monthly gonadosomatic index (GSI) of male and female F. jenkinsi were documented, and spawning phases and oocyte stages were examined using reproductive histology. In addition, various stages of …

Patterns Of Diversity, Zoogeography, And Ecological Gradients In Honduran Freshwater Fishes, Wilfredo Antonio Matamoros

Dissertations

Nineteen major river drainages across Honduras were sampled from 2005-2009 in order to understand Honduran geographical patterns of freshwater fish distribution, to delineate the Honduran freshwater fishes ichthyographical provinces, and to understand patterns of species assemblage at the drainage level. A total of 166 species of freshwater fishes were sampled, a 64% increase over previously published reports. Eight species belong to primary freshwater families, 47 to secondary, and 111 to peripherals. In order to understand the species-drainages relationships, a presence-absence matrix was built for the 19 major drainages and 55 primary and secondary freshwater fishes. Correspondence and cluster analysis clearly …

Algal Community Structure In Water Bodies Of Mississippi: The Role Of Environmental Factors In Its Spatial And Temporal Dynamics, Nestor Raul Anzola

Dissertations

A meta-analysis was done on studies that included six major taxa groups: Cyanobacteria, Chlorophyta, Chrysophyta (primarily diatoms), Euglenophyta, Pyrrophyta, and Rhodophyta and six aquatic habitats of Mississippi to determine the abundance and richness of the algal community and to identify relevant environmental drivers of algal assemblage composition. Twenty algae data sets on small order streams, large streams and rivers, lakes and reservoirs, fish production ponds, brackish water, and marine water were analyzed. Chlorophyta was dominant in lakes and reservoirs and was the most diverse taxa in the phytoplankton of small order streams and large streams and rivers. Cyanobacteria were the …

Burrowing Behavior Of The Fiddler Crab Uca Panacea In Relation To Food Availability, Jennifer A. Mraz

Master's Theses

Much of fiddler crab behavior is regulated by the tides and centers around their burrows. Field and laboratory studies were conducted to assess the effect of food availability on burrowing in the Gulf coast fiddler crab, Vea panacea. In the field, crabs were observed for droving behavior through visual observations; evidence for this behavior was assessed further by determining sediment organic content. Although the organic content did increase significantly as distance increased from the edge of the water, fiddler crabs did not exhibit droving behavior at my study site. Field burrows were cast and measured for depth, diameter and volume …

Evaluating Ecosystem Response To Oyster Restoration And Nutrient Load Reduction With A Multispecies Bioenergetics Model, Richard S. Fulford, Denise L. Breitburg, Mark Luckenbach, Roger I.E. Newell

Faculty Publications

Many of the world's coastal ecosystems are impacted by multiple stressors each of which may be subject to different management strategies that may have overlapping or even conflicting objectives. Consequently, management results may be indirect and difficult to predict or observe. We developed a network simulation model intended specifically to examine ecosystem-level responses to management and applied this model to a comparison of nutrient load reduction and restoration of highly reduced stocks of bivalve suspension feeders (eastern oyster, Crassostrea virginica) in an estuarine ecosystem (Chesapeake Bay, USA). Model results suggest that a 50% reduction in nutrient inputs from the watershed …

Development Of Representative Species-Level Molecular Markers And Morphological Character Analysis Of Leucothoid Amphipods (Crustacea: Amphipoda), Kristine Nicolle White

Dissertations

Leucothoid amphipods were investigated using morphology and molecular rDNA gene sequence fragments. The morphological diagnostic characters for traditional taxonomy have been clarified, a molecular marker for representative species has been developed, and one of the current anamorph-leucomorph connections has been confirmed with molecular sequence data. Ultimately this study has combined traditional morphological and modern molecular methods to clarify the taxonomy and to propose a preliminary phylogeny of the Leucothoidae. Analysis of 18S rDNA gene fragments from 13 species in two genera supported the current morphological species designations and the separation of the family into two clades. Combined analysis of 18S …

Systematic Revision Of The Kalliapseudidae (Crustacea: Peracarida: Tanaidacea) And The Population Genetic Structure And Phylogeography Of A Species Along The Southeastern And Gulf Coasts Of North America, David Thomas Drumm

Dissertations

The Kalliapseudidae is a family of shallow burrow-dwelling marine and estuarine tanaidaceans. There are currently 39 known species of 12 genera and three subfamilies. They are primarily circumtropical in distribution; however, several species are found in temperate waters. The phylogeny of Kalliapseudidae is assessed to test the monophyly of currently accepted subfamilies and genera, based largely on examination of material loaned from various museums and institutions. Multiple exemplars from other apseudomorph families were also included in the ingroup to test the monophyly of the family. Parsimony analyses included 41 terminal taxa and 64 binary and multistate morphological characters. Analyses based …

Relationships Between Particle Properties And Scattering In Coastal Waters Of The Northern Gulf Of Mexico Influenced By The Mississippi River, Bruce Alan Spiering

Dissertations

This study was conducted to determine how the characteristics of an assemblage of suspended particles, including their composition and size affect the relationship between the optical scattering coefficient b (m-1), and the dry mass of the particles in suspension. Knowledge of the scattering to total suspended matter (TSM) ratio, i.e. the mass specific scattering coefficient b* (m2/g), is important because the light detected by optical imaging sensors used for remote sensing is the light that has been scattered by particles back through the water surface. If this ratio is not known or varies within the region of interest, accurate estimates …

Beyond Affymetrix Arrays: Expanding The Set Of Known Hybridization Isotherms And Observing Pre-Wash Signal Intensities, Alexander Pozhitkov, Idrissa Boube, Marius Brouwer, Peter A. Noble

Faculty Publications

Microarray hybridization studies have attributed the nonlinearity of hybridization isotherms to probe saturation and post-hybridization washing. Both processes are thought to distort 'true' target abundance because immobilized probes are saturated with excess target and stringent washing removes loosely bound targets. Yet the paucity of studies aimed at understanding hybridization and dissociation makes it difficult to align physicochemical theory to microarray results. To fill the void, we first examined hybridization isotherms generated on different microarray platforms using a ribosomal RNA target and then investigated hybridization signals at equilibrium and after stringent wash. Hybridization signal at equilibrium was achieved by treating the …

Growth Patterns Of Shoal Grass Halodule Wrightii And Manatee Grass Syringodium Filiforme In The Western Gulf Of Mexico, Melissa A. Gutierrez, Annette A. Cardona, Delbert L. Smee

Gulf and Caribbean Research

Although manatee grass is becoming increasingly abundant in Texas bays, its growth characteristics have not been measured in the western GOM. Changes in seagrass species composition can have significant community effects (Micheli et al. 2008), but the effects of a transition from shoal to manatee grass in the LM have not been extensively studied (but see Tolan et al. 1997). The goals of our study were to measure growth patterns of these two seagrass species in two locations in the western GOM that vary in salinity, epiphyte loads, and nutrient inputs.

Do Small, Patchy, Constructed Intertidal Oyster Reefs Reduce Salt Marsh Erosion As Well As Natural Reefs?, Alix G. Stricklin, Mark S. Peterson, John D. Lopez, Christopher A. May, Christina F. Mohrman, Mark S. Woodrey

Gulf and Caribbean Research

One ecological service that oyster reefs provide is stabilization of shorelines through reduced wave energy and erosion from boat traffic, storms, and predominant wind direction. Additionally, increasing sedimentation can enhance the growth of emergent marsh vegetation which further stabilizes unconsolidated sediments. A 21 mo study of constructed (with only 30-35% coverage) and natural oyster reefs in 3 bayous in the Grand Bay National Estuarine Research Reserve (NERR) suggested constructed reefs benefit this retrograding deltaic ecosystem. The marsh edge adjacent to all constructed reefs was less eroded (mean = 0.043 m) than edges adjacent to natural reefs (mean = 0.728 m), …

Observations Of A Black Grouper (Mycteroperca Bonaci) Spawning Aggregation In Bermuda, Brian E. Luckhurst

Gulf and Caribbean Research

Diving observations at a black grouper (Mycteroperca bonaci) spawning aggregation site on Bermuda’s reef platform revealed many similarities to observations of this species obtained at multi-species spawning aggregation sites in Belize. In addition to similarities in body sizes, color patterns and some behavior, the principal spawning period in the days after the full moon was also similar. Although spawning was not observed in this study, there was ample indirect evidence of spawning at the site, i.e. courtship behavior by males, females with distended abdomens, and color changes. The formation of temporary spawning territories by males and courtship behavior …

Effects Of Hurricane Katrina On An Incipient Population Of Giant Salvinia Salvinia Molesta In The Lower Pascagoula River, Mississippi, Pam L. Fuller, Mike G. Pursley, Dale Diaz, Wesley Devers

Gulf and Caribbean Research

The objectives of this study were to: 1) survey the lower Pascagoula River Basin and determine the post–storm distribution and abundance of giant salvinia; 2) control any remaining giant salvinia through physical and/or chemical means; 3) determine the fate of the bio–control agents; and 4) determine if re–introduction of salvinia weevils is needed and if so, to decide where best to release them.

First Report Of Viral Pathogens Wssv And Ihhnv In Argentine Crustaceans, Sergio R. Martorelli, Robin M. Overstreet, Jean A. Jovonovich

Faculty Publications

The pathogenic penaeid shrimp viruses white spot syndrome virus (WSSV) and infectious hypodermal and hematopoietic necrosis virus (IHHNV) are reported for the first time from Argentina. They both occurred in wild crustaceans in Bahia Blanca Estuary, with WSSV detected by polymerase chain reaction (PCR) or real time quantitative PCR (qPCR) methods as infecting samples as high as 56% of the penaeid Artemesia longinaris Bate, 1888, 67% of the grapsoid Cyrtograpsus angulatus Dana, 1851, and 40% of the introduced palaemonid Palaemon macrodactylus Rathbun, 1902. The highest detected copy number was 39,600 copies/mu g DNA. IHHNV was tested for using PCR in …

Constructing A Fish Metabolic Network Model, Shuzhao Li, Alexander Pozhitkov, Rachel A. Ryan, Charles Steve Manning, Nancy J. Brown-Peterson, Marius Brouwer

Faculty Publications

We report the construction of a genome-wide fish metabolic network model, MetaFishNet, and its application to analyzing high throughput gene expression data. This model is a stepping stone to broader applications of fish systems biology, for example by guiding study design through comparison with human metabolism and the integration of multiple data types. MetaFishNet resources, including a pathway enrichment analysis tool, are accessible at http://metafishnet.appspot.com.

Endohelminths Of A Snake Mackerel, Gempylus Serpens (Trichiuroidea: Gempylidae), From The Gulf Of Mexico, Charles K. Blend, Norman O. Dronen, James S. Franks, George W. Benz

Gulf and Caribbean Research

Endohelminths are reported from a female snake mackerel, Gempylus serpens (Trichiuroidea: Gempylidae), captured from a depth of 61 m in the Gulf of Mexico 140 km south of the mouth of Mobile Bay, AL, in August 1998. A diverse endohelminth parasite fauna was found: 29 plerocercoid type I tetraphyllideans from the lower intestine; 4 didymozoid metacercariae allocated to the collective group Monilicaecum and one didymozoid metacercaria of the collective group Torticaecum from the pyloric cecum; one juvenile Gonocerca phycidis from the stomach; and 5 larvae (L3 stage) comprising 3 species of Anisakis from the pyloric cecum. These nematodes were identified …

Recruitment And Colonization Of Macroalgae To A Newly Constructed Rocky Intertidal Habitat In The Northwest Gulf Of Mexico, Ryan L. Fikes, Roy L. Lehman

Gulf and Caribbean Research

Marine macroalgal assemblages on artificial structures play an important ecological role in coastal and estuarine ecosystems and may supplement natural communities in nearby waters. The rocky jetties of Packery Channel, located near Corpus Christi, Texas represent a recent addition of hard structure for colonization in the northwest Gulf of Mexico. The purpose of this research was to monitor the initial immigration of macroalgal species during the first year of colonization and determine the effects of wave energy on recruitment. Ten sampling sites were established along the offshore portion of the new Packery Channel jetties. Samples were taken bimonthly from along …

Observations On The Kalliapseudid Tanaidacea (Crustacea: Malacostraca: Peracarida) From The Northwestern Atlantic, With An Illustrated Key To The Species, David T. Drumm, Richard W. Heard

Gulf and Caribbean Research

New information for the kalliapseudid Tanaidacea occurring in the northwestern Atlantic is presented and discussed, including data on range extensions and new depth ranges for 4 species. The taxa studied came from the shelf and coastal waters of the southeastern United States, Puerto Rico and Trinidad. The occurrence of Mesokalliapseudes bahamensis Sieg is extended from the Bahamas and Belize to the coastal waters of East and Gulf coasts (South Carolina to West Florida). The range of Psammokalliapseudes granulosus Brum is expanded northward into the eastern Gulf of Mexico and new locality records for this species are established for Tobago and …

Evaluating Management Actions For Spotted Seatrout, Cynoscion Nebulosus, In Mississippi With An Age-Structured Projection Model, Richard S. Fulford, J. Read Hendon

Gulf and Caribbean Research

Spotted seatrout, Cynoscion nebulosus, is an important recreational fishery in the coastal waters of the Gulf of Mexico and is the most sought after gamefish in coastal Mississippi. The management of C. nebulosus is state-specific, and unlike other similarly managed species, data on both population structure and movement support the existence of local sub-stocks. It is important for each state to clearly examine its own sub-stock in the context of its own state fishery in order to properly manage for local sustainability. We used an age-structured assessment model to examine the status (1993–2005) of the Mississippi C. nebulosus population …

Notes On The Biology Of An Adult Female Chimaera Cubana Captured Off St. Croix, U.S. Virgin Islands, William B. Driggers Iii, Jill M. Hendon, Michael J. Andres, Stephen S. Curran, Christopher T. Gledhill, Mark A. Grace, Michael D. Hendon, Christian M. Jones, Brandi T. Noble, Kevin R. Rademacher

Gulf and Caribbean Research

Within the western North Atlantic Ocean there are at least 4 genera and 5 species of chimaeroids occurring in deep waters generally associated with outer continental slopes or areas of high bathymetric relief (Didier 2002; Didier 2004). Two chimaeroids, Chimaera cubana and Hydrolagus alberti, are known to be indigenous to the Caribbean Sea in waters associated with the Greater and Lesser Antilles. While H. alberti occurs throughout the Gulf of Mexico and the Caribbean Sea, C. cubana is thought to be endemic to an area bounded by Cuba and Colombia (IUCN 2009). These two chimaeras are readily differentiated by …

Remote Sensing Of Harmful Algal Blooms In The Mississippi Sound And Mobile Bay: Modelling And Algorithm Formation, Dan Martin Holiday

Dissertations

The incidence and severity of harmful algal blooms have increased in recent decades, as have the economic effects of their occurrence./The diatom Pseudo-nitzschia spp. caused fisheries closures in Mobile Bay during 2005 due to elevated levels of domoic acid. In the previous 4 years Karenia brevis counts of >5,000 cells L"1 have occurred in Mobile Bay and the Mississippi Sound. Population levels of this magnitude had previously been recorded only in 1996. Increases in human populations, urban sprawl, development of shoreline properties, sewage effluent and resultant changes in NP ratios of discharge waters, and decline in forest and marsh lands, …

Experimental Population Dynamics Of Amyloodiniumocellatum In The Spotted Seatrout, Cynoscion Nebulosus, And The Red Snapper, Lutjanus Campechanus, Ignacio Masson

Dissertations

Amyloodinium ocellatum is a parasitic dinoflagellate that infects warm water marine bony fishes and causes high mortalities in aquaculture settings. It has three life history stages: the feeding trophont, the reproductive tomont, and the infective dinospore. This dissertation describes the characteristics of A. ocellatum infections in juvenile spotted seatrout, Cynoscion nebulosus, and red snapper, Lutjanus campechanus, studies the survival and fecundities of the stages in the life cycle of the parasite and presents a population model for A. ocellatum.

At 25°C and 33 ppt, the peak of trophont detachment occurred on day 2 postinfection in spotted seatrout and day 3 …

Conservation Genetics And Systematics Of Several Turtles Species In The Southeastern United States, Joshua Robert Ennen

Dissertations

Chelonians (i.e., turtles) are an imperiled group of reptiles with about 66% of the recognized species listed as threatened by the IUCN. Most chelonian species have a unique set of life history traits (i.e., longevity, delayed sexual maturity, and low juvenile survivorship), which makes their populations exceedingly sensitive to increases in adult and juvenile moralities. With numerous anthropogenic effects (e.g., habitat alteration, exploitation, and over harvesting) negatively influencing mortality rates, chelonians have experienced global precipitous declines and extinctions.

This dissertation focuses on species within two chelonian genera, Gopherus and Graptemys. Although these two genera are vastly different ecologically, they are …

Sensitivity Of The Carbon Cycle In The Arctic To Climate Change, A. David Mcguire, Leif G. Anderson, Torben R. Christensen, Scott Dallimore, Laodong Guo, Daniel J. Hayes, Martin Heimann, Robie W. Macdonald, Nigel Roulet

Faculty Publications

The recent warming in the Arctic is affecting a broad spectrum of physical, ecological, and human/cultural systems that may be irreversible on century time scales and have the potential to cause rapid changes in the earth system. The response of the carbon cycle of the Arctic to changes in climate is a major issue of global concern, yet there has not been a comprehensive review of the status of the contemporary carbon cycle of the Arctic and its response to climate change. This review is designed to clarify key uncertainties and vulnerabilities in the response of the carbon cycle of …

A Method Of Successive Corrections Of The Control Subspace In The Reduced-Order Variational Data Assimilation, Max Yaremchuk, Dmitri A. Nechaev, Gleb Panteleev

Faculty Publications

A version of the reduced control space four-dimensional variational method (R4DVAR) of data assimilation into numerical models is proposed. In contrast to the conventional 4DVAR schemes, the method does not require development of the tangent linear and adjoint codes for implementation. The proposed R4DVAR technique is based on minimization of the cost function in a sequence of low-dimensional subspaces of the control space. Performance of the method is demonstrated in a series of twin-data assimilation experiments into a nonlinear quasigeostrophic model utilized as a strong constraint. When the adjoint code is stable, R4DVAR's convergence rate is comparable to that of …

Remote Sensing And Mapping Of Tamarisk Along The Colorado River, Usa: A Comparative Use Of Summer-Acquired Hyperion, Thematic Mapper And Quickbird Data, Gregory A. Carter, Kelly L. Lucas, Gabriel A. Blossom, Cheryl L. Lassitter, Dan M. Holiday, David S. Mooneyhan, Danielle R. Fastring, Tracy R. Holcombe, Jerry A. Griffith

Faculty Publications

Tamarisk (Tamarix spp., saltcedar) is a well-known invasive phreatophyte introduced from Asia to North America in the 1800s. This report compares the efficacy of Landsat 5 Thematic Mapper (TM5), QuickBird (QB) and EO-1 Hyperion data in discriminating tamarisk populations near De Beque, Colorado, USA. As a result of highly correlated reflectance among the spectral bands provided by each sensor, relatively standard image analysis methods were employed. Multispectral data at high spatial resolution (QB, 2.5 m Ground Spatial Distance or GSD) proved more effective in tamarisk delineation than either multispectral (TM5) or hyperspectral (Hyperion) data at moderate spatial resolution (30 m …

Detecting Proteins In Highly Autofluorescent Cells Using Quantum Dot Antibody Conjugates, Karen M. Orcutt, Shanshan Ren, Kjell Gundersen

Faculty Publications

We have applied quantum dot (Qdot) antibody conjugates as a biomolecular probe for cellular proteins important in biogeochemical cycling in the sea. Conventional immunological methods have been hampered by the strong autofluorescence found in cyanobacteria cells. Qdot conjugates provide an ideal alternative for studies that require long-term imaging of cells such as detection of low abundance cellular antigens by fluorescence microscopy. The advantage of Qdot labeled probes over conventional immunological methods is the photostability of the probe. Phycoerythrin bleaches in cyanobacterial cells under prolonged UV or blue light excitation, which means that the semiconducting nanocrystal probe, the Qdot, can yield …

Bridging Functional Genomics And Toxicogenomics Through Dna Microarrays In A Fish Model, Shuzhao Li

Dissertations

In a case study of finding gene expression signatures for environmental stressors in Cyprinodon variegatus, this dissertation examines several important issues of applying DNA microarray technology to fish toxicogenomics. The most relevant disciplines, fish toxicogenomics and computational systems biology are reviewed in Chapter 1. Chapter 2 reviews major aspects of DNA microarray technology.

On DNA microarrays, even for probes that target the same transcript, large variations are seen in the probe signals. These variations are partly dependent and partly independent on probe sequences. Chapter 3 estimates the sequence independent variation by combining experimental and computational approaches. Chapter 4 and …

Morphological Deformities As Biomarkers In Fish From Contaminated Rivers In Taiwan, Peter Lin Sun, William E. Hawkins, Robin M. Overstreet, Nancy J. Brown-Peterson

Faculty Publications

Tilapia (Oreochromis spp.) were collected seasonally from four contaminated rivers in southwestern Taiwan for studies of morphological deformities that could be used as biomarkers of contamination. Morphological deformities found in tilapia were separated into 15 categories. Overall, the prevalence of deformities such as split fins, lower lip extension and gill deformities were significantly related to various water quality parameters, including low DO and high ammonium, lead and zinc concentrations. The persistence of tilapia in polluted waters and the development of a suite of morphological deformities suggest that tilapia can be used as sentinels of non-point source pollution in rivers.

Factors Influencing The Environmental Quality Of The Bay Of Saint Louis, Mississippi And Implications For Evolving Coastal Management Policies, Pradnya Ankush Sawant

Dissertations

The Bay of St. Louis, MS is a small northern Gulf of Mexico estuary that has been identified by the Mississippi Department of Environmental Quality (MDEQ) as an impaired waterbody for its designated uses, mainly due to the presence of pollutant pathogens. A systematic study of this estuary was important to understand the behavior and responses of the bay to several natural and anthropogenic forcing factors. A 14- month long study (bimonthly sampling) to evaluate its environmental quality was undertaken from April 2003 to May 2004. Environmental quality was defined as "the health of an ecosystem characterized in terms of …