Marine Biology Commons^™

Fisheries Research Report No.161 - Distribution And Abundance Of Juvenile Pink Snapper, Pagrus Auratus, In The Gulfs Of Shark Bay, Western Australia, From Trap Surveys, Gary Jackson, C. Burton, Michael J. Moran, Ben Radford

Fisheries Research Reports

Trap surveys using Antillean-Z fish traps were carried out across a range of depths and habitat types in the gulfs of Shark Bay between 1998 and 2000. Objectives of the study were (i) to evaluate the efficiency of the fish traps in catching 0+ and 1+ pink snapper (Pagrus auratus), (ii) to investigate the distribution and abundance of juvenile pink snapper in both gulfs using trap surveys, (iii) to investigate the influence of environmental factors including habitat-type on the distribution of juvenile pink snapper and, (iv) to develop trap indices of 0+ relative abundance and assess their use for monitoring …

Shark Bay Prawn And Scallop Fisheries. Draft Review Report, Department Of Fisheries Western Australia

Fisheries Management Papers

In recent times, the Department of Fisheries has received representations from both sectors about the ongoing interaction of the fisheries and their respective management settings. As a result, a decision was made to comprehensively review the fisheries, taking into account matters of fishery sustainability and gear interactions, together with industry economics and market considerations. The review has also addressed research requirements to ensure an appropriate scientific basis for decision-making into the future.

Fisheries Research Contract Report No. 18 - Aquatic Animal Health Subprogram: Current And Future Needs For Aquatic Animal Health Training And For Systems For Merit-Based Accreditation And Competency Assessments (Frdc Project No. 2005/641) Final Report, Matt Landos, Navneet Dhand, Brian Jones, Richard Whittington

Fisheries Research Contract Reports

To scope and clearly define current and future needs for aquatic animal health training and for systems for merit-based accreditation and competency assessments.

Provision of high quality aquatic animal health (AAH) services is a complex multidisciplinary activity. Hence, training programs must address all discipline areas to achieve the desired outcome of robust service delivery to meet all stakeholder group needs. The current and future needs for AAH training have been identified across many sectors through survey work and direct interviews with key stakeholders. There is a shortfall in both total capacity and more prominently, in the availability of high skill …

Fisheries Occasional Publication 40: A Summary Of Data Collected By The Angler’S Daily Log Book And Fishing Tournament Monitoring Programs In 2004-2006, Kimberley A. Smith, M Hammond, Joshua Brown

Fisheries Occasional Publications

Catch information and biological samples collected by recreational anglers in daily log books can provide valuable information about local fish stocks. The numbers and lengths of important recreational target species can be used to monitor their abundance and population structure, which can form the basis of fishery stock assessments. In addition, the total composition of the catch and observations about fish health provide measures of local biodiversity and ecosystem health. The Department of Fisheries (DoF) Recreational Angler’s Daily Log Book Program was launched in March 2004 as part of the DoF Research Angler Program (RAP). The current log book format …

Fisheries Research Report No.159 - A 12-Month Survey Of Recreational Estuarine Fishing In The South Coast Bioregion Of Western Australia During 2002/03, C.B. Smallwood, N. R. Sumner

Fisheries Research Reports

The Recreational Fisheries Program of the Department of Fisheries, Western Australia, has a strategic plan to conduct comprehensive creel surveys of recreational fishing in each of the state’s marine bioregions (Penn et al., 2003). These bioregions are the West Coast, Gascoyne, Pilbara/ Kimberley and South Coast (Figure 1). To record and monitor changes in recreational catch and fishing effort, an integrated approach where all bioregions are to be surveyed on a regular basis was proposed. Until this study, the South Coast was the only bioregion in which a survey of recreational fishing had not been undertaken. Although originally intended to …

The Phylum Cnidaria: A Review Of Phylogenetic Patterns And Diversity 300 Years After Linnaeus, Catherine S. Mcfadden, Marymegan Daly, Mercer R. Brugler, Paulyn Cartwright, Allen G. Collins, Michael N. Dawson, Daphne G. Fautin, Scott C. France, Dennis M. Opresko, Estefania Rodriguez, Sandra L. Romano, Joel L. Stake

All HMC Faculty Publications and Research

Systema Naturae includes representatives of every major lineage of the animal phylum Cnidaria. However, Linnaeus did not classify the members of the phylum as is now done, and the diversity of the group is not well represented. We contrast the Linnaean perspective on cnidarian diversity with the modern, phylogenetic perspective. For each order, we detail diversity at the family level, providing phylogenetic context where possible.

Otolith Chemistry Reflects Frontal Systems In The Antarctic Circumpolar Current, J. R. Ashford, A. I. Arkhipkin, C. M. Jones

OES Faculty Publications

Pronounced environmental trends across fronts suggest that the otolith chemistry of oceanic fish can resolve zones on either side, promoting application to population questions at similar spatial scales. Trace and minor elements laid down immediately prior to capture - along the edges of otoliths from Patagonian toothfish Dissostichus eleginoides - discriminated frontal zones in the Antarctic Circumpolar Current in the Southwestern Atlantic Ocean. Mean values differentiated sampling areas by up to 2.6 standard deviations, suggesting: (1) otolith Mg/Ca enrichment related to fish activity around the Burdwood Bank; (2) Mn/Ca enrichment associated with South America; (3) Sr/Ca linked to the presence …

Review Of The Crevalle Jacks, Caranx Hippos Complex (Teleostei: Carangidae), With A Description Of A New Species From West Africa, William F. Smith-Vaniz, Kent E. Carpenter

Biological Sciences Faculty Publications

The Caranx hippos species complex comprises three extant species: crevalle jack (Caranx hippos) (Linnaeus, 1766) from both the western and eastern Atlantic oceans; Pacific crevalle jack (Caranx caninus) Günther,1868 from the eastern Pacific Ocean; and longfin crevalle jack (Caranx fischeri) new species, from the eastern Atlantic, including the Mediterranean Sea and Ascension Island. Adults of all three species are superficially similar with a black blotch on the lower half of the pectoral fin, a black spot on the upper margin of opercle, one or two pairs of enlarged symphyseal canines on the lower jaw, …

A Decade Of Changes For Virginia Freshwater Aquaculture (1993-2003), Scott H. Newton

Virginia Journal of Science

Aquaculture surveys were designed and initiated along with the writing of the State Aquaculture Plan during 1993 to 1995. The first Virginia Aquaculture Survey, conducted for the production year 1993, established the status of both freshwater and marine commercial industries. Subsequent surveys were conducted to trace industry developments relevant to production aspects and economic impacts. Survey data from Virginia Agricultural Statistics Service Reports for 1993, 1995, 1997, and 2003 summarize a decade of Virginia freshwater aquaculture information. Significant changes in sales among the principal aquaculture species occurred over the 10-year period. The 1993 freshwater aquaculture value of $2.8 million increased …

Fisheries Research Contract Report No. 15 - Aquatic Animal Health Subprogram: Pilchard Herpesvirus Infection In Wild Pilchards (Frdc Project No. 2002/044) Final Report, Brian Jones, Melanie Crockford, Richard Whittington, Mark Crane, Graham Wilcox

Fisheries Research Contract Reports

In 1995 and again in 1998/9, millions of pilchards (Sardinops sagax neopilchardus) were found dead or dying off the coast of Australia. Some pilchards in New Zealand were also affected during the 1995 epizootic. The epizootics moved progressively in a "bushfire-like" manner against the prevailing currents at a rapid speed. An uncharacterised herpesvirus, pilchard herpesvirus (PHV), was associated with both mortality events and, based on its occurrence in affected fish and the disease pathogenesis, generally accepted as the causative agent, although experimental evidence of its role was not established. Until recently, rapid and sensitive methods to detect PHV were not …

Detection Of Panulirus Argus Virus 1 (Pav1) In The Caribbean Spiny Lobster Using Fluorescence In Situ Hybridization (Fish), Caiwen Li, Jeffrey D. Shields, Hamish J. Small, Kimberly S. Reece, Carmony L. Hartwig, Roland A. Cooper, Robert E. Ratzlaff

Biological Sciences Faculty Publications

Panulirus argus Virus 1 (PaV1) is the first virus known to be pathogenic to a wild lobster. It infects the Caribbean spiny lobster P. argus from the Florida Keys, and has a predilection for juveniles. The monitoring of the virus in wild populations and study of its behavior in the laboratory require the development of reliable diagnostic tools. A sensitive and specific fluorescence in situ hybridization (FISH) assay was developed for detection of PaV1. The lower detection limit using a 110 bp DNA probe in a dot-blot hybridization for PaV1 DNA was 10 pg of cloned template PaV1 DNA and …

Fisheries Research Report No. 158 - An Assessment Of The Blue Swimmer Crab Fishery In Geographe Bay, Lynda M. Bellchambers, K. D. Smith, D. Harris

Fisheries Research Reports

The study was undertaken to provide detailed information on blue swimmer crabs in Geographe Bay so that the recreational and commercial fishery issues could be addressed using more accurate data than was previously available. A ministerial decision that banned commercial fishing for blue swimmer crabs in Geographe Bay was made in January 2005 while this study was underway. The intention of this report was to provide a summary of information on crab stocks in the region, not to alter the current management arrangements. This report describes experimental sampling, commercial catch statistics, commercial catch monitoring and surveys of recreational fishers to …

Fisheries Research Report No. 155 - Identification Of Western Australian Grey Nurse Shark Aggregation Sites., J. Chidlow, Daniel J. Gaughan, Rory Mcauley

Fisheries Research Reports

Final report to the Australian Government, Department of the Environment and Heritage

The first phase of this project involved a desktop study to broadly identify areas where Western Australian Grey Nurse Sharks potentially aggregate for further investigation with field surveys. These areas were identified from information obtained from commercial shark fishers, previously unpublished research data, as well as anecdotal reports of sightings or captures from recreational divers and fishers, professional dive stores, dive clubs and charter boat operators. A total of 25 survey areas were identified during the desktop study, 16 of which were in depths less than 30m and …

Fisheries Occasional Publication No. 35 - Rock Lobster Processor Licensing Arrangements (Discussion Paper), Department Of Fisheries Western Australia

Fisheries Occasional Publications

On 28 March 2002, the Minister for Agriculture, Forestry and Fisheries, Hon Kim Chance MLC, announced the Government's position on National Competition Policy (NCP) insofar as this policy related to licensing of western rock lobster processors (hitherto referred to as 'rock lobster processors' or simply as 'processors'), as governed by the provisions of the Fish Resources Management Act 1994 (FRMA).

In making the announcement, the Minister also undertook to further "review the potential costs and risks of deregulation" ..."in 2006", when they "are better understood by both Government and industry itself'.

This document is the first stage of the review …

Substituting Otoliths For Chemical Analyses: Does Sagitta = Lapillus?, Nathan G. Smith, Cynthia M. Jones

OES Faculty Publications

Chemical analysis of fish otoliths has become an important technique in fisheries science with widespread applications. Most research up to this point has focused predominantly on sagittal otoliths, but the underlying assumptions may also apply to lapilli. The goal of this study was to determine whether lapilli and sagittae have the same otolith chemistry and whether one can be substituted for the other for solution-based chemical analysis in wild-captured fish. We compared the stable isotope chemistry (δ13C and δ18O) of paired sagittae and lapilli of juvenile spotted seatrout Cynoscion nebulosus collected from Chesapeake Bay seagrass beds in 2002. …

Aquaculture Of Live Rocks, Live Sand, Coral And Associated Products. A Discussion And Draft Policy Paper., Department Of Fisheries.

Fisheries Management Papers

The Department of Fisheries has prepared this discussion paper to outline the position and needs of the emerging industry and the proposed management arrangements and policies in place. Therefore, the key objectives of this document are to outline and develop: The key information about live rock, sand and coral aquaculture that is relevant to the development of an industry in WA; and A draft policy for the management of live rock, sand and coral aquaculture, on both onshore and offshore licence sites.

Fisheries Research Report No. 153 - A 12-Month Survey Of Recreational Fishing In The Pilbara Region Of Western Australia During 1999-2000, P C. Williamson, Neil R. Sumner, B E. Malseed

Fisheries Research Reports

A 12-month creel survey of recreational boat-based and shore-based fishing in the Pilbara region (Onslow to Broome inclusive) of Western Australia was conducted between December 1999 and November 2000. During the survey 3,085 boat crews were interviewed at public boat ramps when they returned from their fishing trips. Patrols conducted along the coastline interviewed 73 groups of boat-based fishers and 569 groups of shore-based fishers at fishing locations and camp sites.

The total annual recreational fishing effort for the Pilbara region was estimated to be 201,000 fisher days (95%CI: 193,000 – 210,000). This comprised 109,000 fisher days by boats launched …

Fisheries Research Report No 154 - The Development Of A Rigorous Sampling Methodology For A Long-Term Annual Index Of Recruitment For Finfish Species From South-Western Australia., Daniel J. Gaughan, Suzanne G. Ayvazian, G Nowara, M Craine

Fisheries Research Reports

Final FRDC Report - 1999/153.

This study has determined the optimal strategies to achieve statistically robust indices of recruitment of five key finfish species in south-western Australia. For another two species such indices could not be established. The sampling strategies developed will initially focus on the most appropriate location, month, and lunar phase, after which fine tuning of the sampling activity will be undertaken with respect to time of day, tide height, weather conditions etc. A significant outcome from the project is that five finfish species have a sampling strategy for recruits that can be utilized as a monitoring program …

Recommended Management Arrangements For The West Coast Commercial 'Wetline' Fishery. A Report To The Minister For Fisheries., West Coast And Gascoyne Management Planning Panel.

Fisheries Management Papers

No abstract provided.

Recommended Access And Allocation Criteria For The West Coast And Gascoyne Commercial 'Wetline' Fisheries. A Report To The Ministry Of Fisheries., The Commercial Access Panel.

Fisheries Management Papers

The CAP’s primary responsibility was to develop criteria for access and allocation within the context of the management framework developed by the MPP. It is therefore important that this management paper is read in conjunction with the papers prepared by the MPP that outline the recommended management arrangements for the Gascoyne (Fisheries Management Paper No. 205) and the West Coast (Fisheries Management Paper No. 206) regions.

Assessment Of Western Rock Lobster Strategic Management Options. A Bio-Economic Evaluation Of Management Options For The West Coast Rock Lobster Fishery. Vol. 2, Economic Research Associates Pty Ltd

Fisheries Management Papers

Economic Research Associates (ERA) was commissioned to evaluate the relative ‘socio-economic’ benefits of alternative management Scenarios for the Western Rock Lobster Managed Fishery. This study is intended as input into industry’s consideration of the future management policy direction for the fishery.

Differential Expression Of Immune Response Genes In Steller Sea Lions (Eumetopias Jubatus): An Indicator Of Ecosystem Health?, Lizabeth Bowen, Brian Aldridge, Kimberlee Beckmen, Tom Gelatt, Lorrie Rea, Kathy Burek, Ken Pitcher, Jeffrey L. Stott

United States Department of Commerce: Staff Publications

Characterization of the polygenic and polymorphic features of the Steller sea lion major histocompatibility complex (MHC) provides an ideal window for evaluating immunologic vigor of the population and identifying emergence of new genotypes that reflect ecosystem pressures. MHC genotyping can be used to measure the potential immunologic vigor of a population. However, since ecosystem-induced changes to MHC genotype can be slow to emerge, measurement of differential expression of these genes can potentially provide real-time evidence of immunologic perturbations. MHC DRB genes were cloned and sequenced using peripheral blood mononuclear leukocytes derived from 10 Steller sea lions from southeast Alaska, Prince …

Characterization Of 35 Microsatellite Loci In The Pacific Lion-Paw Scallop (Nodipecten Subnodosus) And Their Cross-Species Amplification In Four Other Scallops Of The Pectinidae Family, Ana M. Ibarra, Jessica Lynn Petersen, Thomas R. Famula, Bernie May

Department of Animal Science: Faculty Publications

Four microsatellite-enriched DNA libraries yielded 35 microsatellite loci from 100 primer pairs designed for Pacific lion-paw scallop, Nodipecten subnodosus. The number of alleles ranged from four to 28. Three of the 35 loci were not in Hardy–Weinberg equilibrium and linkage disequilibrium was found for one pair of loci. These microsatellites will be used to analyze the population structure of the species in Mexico’s Baja Peninsula to propose management strategies for scallop aquaculture development. Twenty-six primer pairs cross-amplified in Nodipecten nodosus, whereas none (Argopecten ventricosus) or few cross-amplified in the Argopecten species.

Proceedings Of The Western Australian Dhufish Workshop 2004, Mark Pagano, Terry Fuller

Fisheries Occasional Publications

The Western Australian Dhufish Workshop 2004 was a joint project between Recfishwest and the Western Australian Department of Fisheries.

The workshop incorporated presentations from the Department of Fisheries, Recfishwest, the Western Australian Fishing Industry Council, Murdoch University and Challenger TAFE to showcase current knowledge relating to the iconic dhufish in Western Australia. The perspectives of a recreational fisher, a commercial wetline operator and a metropolitan charter boat operator were also presented.

Through information sharing and discussion the workshop provided a platform to better understand the fundamental issues that underpin current and future management arrangements for this valuable resource. Both commercial …

Fisheries Occasional Publication No. 33 - Department Of Fisheries Community Survey 2005, Tara Baharthah

Fisheries Occasional Publications

A telephone survey of the Western Australian public was conducted to assess the level of success of programs implemented by the Department of Fisheries. The sample comprised of 700 interviews, 422 in the metropolitan area and 278 in regional areas throughout the State.

This community survey was used to determine the level of recall and awareness of the Department of Fisheries, the understanding and support of the community for the Department of Fisheries' management strategies and to examine key aspects of community participation in recreational fishing.

It is estimated that the overall participation rate for recreational fishing in Western Australia …

Suspension Of Gametogenesis In Green Sea Urchins Experiencing Invariant Photoperiod, S. Anne Boettger, Michael G. Devin, Charles W. Walker

Biology Faculty Publications

No abstract provided.

Molecular Population Genetics Of The Atlantic Sand Fiddler Crab, Uca Pugilator, Along The Atlantic Coast, David A. Weese

College of Graduate Studies: Theses & Dissertations

Author's abstract: The Atlantic sand fiddler crab, Uca pugilator, is an extremely abundant fiddler crab found along the eastern and Gulf coast of the United States. Fiddler crabs have a life cycle with an obligatory planktonic larval phase of 30-90 days, which might be expected to lead to widespread larval dispersal and consequent genetic homogeneity over considerable distances. However a large amount of morphological and behavioral variation is found between northern and southern populations along the eastern coast. This study was undertaken to determine the population genetic structure of U. pugilator and to determine whether these differences may have a …

The Adaptive Value Of Aggregation Among Juvenile Caribbean Spiny Lobster: An Evaluation Using Individual-Based Modeling, Thomas W. Dolan Iii, Mark J. Butler Iv

Biological Sciences Faculty Publications

Ontogenetic changes in gregariousness by pre-reproductive animals, like that observed in juvenile Caribbean spiny lobsters (Panulirus argus), may be adaptive and reflect size-specific changes in the effectiveness of aggregation in promoting survival. Alternatively, aggregation may simply result from changes in the distribution or availability of suitable habitat structure, or from other behaviors that enhance survival. There are currently two hypotheses explaining the potential benefits of gregarious behavior in juvenile spiny lobsters, both of which focus on increasing survivorship by reducing predation pressure: the group benefit hypothesis and the guide hypothesis. The group benefit hypothesis argues that aggregations of …

A Switch From Polyandry To Serial Monogamy: Results From A Three Year Tagging Study Of Horseshoe Crabs In Long Island Sound, Jennifer Mattei Ph.D., Paul Goodell, Christine Depierro, Meghann Burke

Biology Faculty Publications

Part of an ongoing population study of the North American Horseshoe Crab, Limulus polyphemus, in Long Island Sound was completed during the 2003 – 2005 spawning seasons at Milford Point, in Milford, CT. Horseshoe crabs range more widely throughout Long Island Sound than expected and exhibit weak site fidelity. Animals originally tagged in Milford were found as far west as Stamford and as far east as Clinton, CT. during the 3 year study. Out of 522 female horseshoe crabs tagged in 2004 only 4 came back to spawn again at Milford Pt. in 2005. The sex ratios of tagged and …

Distribution Of Foraging Shearwaters Relative To Inner Front Of Se Bering Sea, J. Jahncke, K. O. Coyle, Stephan I. Zeeman, N. B. Kachel, G. L. Hunt Jr.

Marine Sciences Faculty Publications

We examined the hypothesis that short-tailed shearwaters Puffinus tenuirostris aggregate to forage at the inner front of the SE Bering Sea because of enhanced production there. We tested this hypothesis by comparing primary production, the distribution of euphausiids and the distribution of shearwaters relative to the front during late spring and late summer/early fall of 1997, 1998 and 1999. We found enhanced primary production at the front and offshore of the front during summer but not during spring. Primary production varied between seasons and years. Major differences were related to anomalous conditions in 1997 and 1998. The density of euphausiids …