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Genetics Commons™

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2004

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Articles 31 - 36 of 36

Full-Text Articles in Genetics

Patterns Of Mtdna Diversity In Northwestern North America, Ripan S. Malhi, Katherine E. Breece, Beth A. Schultz Shook, Frederika A. Kaestle, James C. Chatters, Steven Hackenberger, David Glenn Smith Feb 2004

Patterns Of Mtdna Diversity In Northwestern North America, Ripan S. Malhi, Katherine E. Breece, Beth A. Schultz Shook, Frederika A. Kaestle, James C. Chatters, Steven Hackenberger, David Glenn Smith

All Faculty Scholarship for the College of the Sciences

The mitochondrial DNA (mtDNA) haplogroups of 54 full-blooded modern and 64 ancient Native Americans from northwestern North America were determined. The control regions of 10 modern and 30 ancient individuals were sequenced and compared. Within the Northwest, the frequency distribution for haplogroup A is geographically structured, with haplogroup A decreasing with distance from the Pacific Coast. The haplogroup A distribution suggests that a prehistoric population intrusion from the subarctic and coastal region occurred on the Columbia Plateau in prehistoric times. Overall, the mtDNA pattern in the Northwest suggests significant amounts of gene flow among Northwest Coast, Columbia Plateau, and Great …

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Calibrating Observed Differential Gene Expression For The Multiplicity Of Genes On The Array, Yingye Zheng, Margaret S. Pepe Jan 2004

Calibrating Observed Differential Gene Expression For The Multiplicity Of Genes On The Array, Yingye Zheng, Margaret S. Pepe

UW Biostatistics Working Paper Series

In a gene expression array study, the expression levels of thousands of genes are monitored simultaneously across various biological conditions on a small set of subjects. One goal of such studies is to explore a large pool of genes in order to select a subset of genes that appear to be differently expressed for further investigation. Of particular interest here is how to select the top k genes once genes are ranked based on their evidence for differential expression in two tissue types. We consider statistical methods that provide a more rigorous and intuitively appealing selection process for k. We …

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Minnesota Banded Darters (Etheostoma Zonale) Exhibit A High Degree Of Genetic Similarity In Mitochondrial Dna Sequences Occurrence, Jean Porterfield, Molly Fee, Jessica Theorin Jan 2004

Minnesota Banded Darters (Etheostoma Zonale) Exhibit A High Degree Of Genetic Similarity In Mitochondrial Dna Sequences Occurrence, Jean Porterfield, Molly Fee, Jessica Theorin

Journal of the Minnesota Academy of Science

Hylogeography, or the historical interpretation of population genetic data, is a useful tool for addressing historical processes like the colonization history of organisms. North American freshwater fishes have experienced glacial ebb and flow in their relatively recent past (as little as 10,000 years before present in Minnesota), and studies of variation in intraspecific DNA sequences of these fishes can shed light on their radiations into previously glaciated areas. This study assessed intraspecific variation in two mitochondrial genes of the banded darter (Etheostoma zonale) from seven Minnesota localities. A high degree of similarity was found among all individuals in the study. …

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Morphological Characteristics And Species Separation Of Hawaiian Postlarval Amphidromous Fishes, M. Eric Benbow, Albert J. Burky, Carl M. Way Jan 2004

Morphological Characteristics And Species Separation Of Hawaiian Postlarval Amphidromous Fishes, M. Eric Benbow, Albert J. Burky, Carl M. Way

Biology Faculty Publications

There are five Hawaiian amphidromous fishes (Gobiidae: Lentipes concolor, Awaous guamensis, Sicyopterus stimpsoni, Stenogobius hawaiiensis; Eleotridae: Eleotris sandwicensis). Amphidromous adults deposit eggs on the stream bottom. After hatching, larvae drift to the ocean for growth followed by postlarval migration back into the streams. Postlarvae were collected to construct a dichotomous identification key based on 12 morphological measures and ray counts from four fins. Overall, the presense of fused pelvic fins, standard length (SL), and fin ray numbers were the most useful in species separation. Gobies were separated from the eleotrid by the former having fused …

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Human Genetic Variation And Health: New Assessment Approaches Based On Ethnogenetic Layering, Fatimah Linda Collier Jackson Jan 2004

Human Genetic Variation And Health: New Assessment Approaches Based On Ethnogenetic Layering, Fatimah Linda Collier Jackson

Department of Biology Faculty Publications

Human genetic variation is often biologically relevant, particularly when it influences (or is influenced by) health outcomes. For example, human genetic variation can modulate disease aetiology as in the case ofhomozygous beta sickle gene (βS/βS or sickle cell) pathology. Conversely, health outcomes, such as the frequency and duration of homozygous sickle cell pathology, can change affected group gene frequencies by selectively targeting and culling specific genotypes in a group, such as clinically more severe βS Bantu/βS Bantu versions of the βS gene, thereby changing future patterns of genetic variation in this gene.

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Demographic Estimates From Y Chromosome Microsatellite Polymorphisms: Analysis Of A Worldwide Sample, J. Michael Macpherson, Sohini Ramachandran, Lisa Diamond, Marcus W. Feldman Jan 2004

Demographic Estimates From Y Chromosome Microsatellite Polymorphisms: Analysis Of A Worldwide Sample, J. Michael Macpherson, Sohini Ramachandran, Lisa Diamond, Marcus W. Feldman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Polymorphisms in microsatellites on the human Y chromosome have been used to estimate important demographic parameters of human history. We compare two coalescent-based statistical methods that give estimates for a number of demographic parameters using the seven Y chromosome polymorphisms in the HGDP-CEPH Cell Line Panel, a collection of samples from 52 worldwide populations. The estimates for the time to the most recent common ancestor vary according to the method used and the assumptions about the prior distributions of model parameters, but are generally consistent with other global Y chromosome studies. We explore the sensitivity of these results to assumptions …

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