Terrestrial and Aquatic Ecology Commons^™

Determining The Impact Of Post-Harvest Water Management On Chironomid Abundance, Agrochemical Biomass And Potential Trophic Biomagnification, Mason Thomas

Theses and Dissertations

Agriculture has diminished shorebirds’ natural habitat in the Mississippi Alluvial Valley. Remaining natural stopover sites are supplemented with agricultural fields during the fall and winter. This study evaluates the impact of 4 different post-harvest water management strategies on shorebird food abundance and potential agrochemical biomagnification. Chironomid samples estimated abundance, biomass, and chironomid agrochemical concentration in each field. A risk assessment of agrochemical biomagnification to shorebirds was made across all treatments. Of treatments represented on all study sites, winter treatment had greatest chironomid abundance and biomass. Models indicated that days since flood initiation, start date, and temperature are significant predictors of …

Detecting Native Freshwater Mussels In Pennsylvania Waterways: Comparison & Validation Of Environmental Dna Methods, Meredith Bennett

Electronic Theses and Dissertations

North America is home to approximately one third of the world's freshwater mussel species. They are highly imperiled organisms due to habitat destruction and invasive species. Traditional surveys rely on visual identification of mussels, but individuals tend to be rare and difficult to identify. An alternative method is to extract environmental DNA (eDNA) from water samples, which has advantages over traditional sampling, including less sampling effort and fewer hazards to researchers and organisms. We conducted a review of the two main eDNA approaches: single-species detection and metabarcoding. We also developed and validated metabarcoding primers for the detection of native mussels. …

American Eel (Anguilla Rostrata) And Other Fishes As Surveyed By Environmental Dna In The Bronx River And Hudson River Watershed, Sam C. Chin

Dissertations, Theses, and Capstone Projects

Mounting an effective response to the threats faced by freshwater fish may require expansions to aquatic biomonitoring in excess of what is feasible using the capture-based survey techniques currently relied upon by natural resource managers. Methods for analyzing environmental DNA (eDNA) are emerging as a minimally invasive and cost-effective approach for surveying fish and other organisms. By detecting taxon-specific DNA sequences recovered from environmental samples (e.g. water, sediment), eDNA methods are able to infer species presence from samples that can be collected rapidly with simple equipment. In many cases, eDNA detection rates of fish species have been shown to meet …

Advancing Assessments Of Climate Change Vulnerability Of West Virginia Watersheds, Joseph T. Molina

Graduate Theses, Dissertations, and Problem Reports (ETD)

As climate change is becoming increasingly recognized as a threat to aquatic ecosystems, climate adaptation planning, in both the long- and short-term, is becoming more common in natural resource management. There is a need within conservation agencies to develop methodologies and assessments that support adaptation planning to efficiently disperse conservation dollars and effectively strengthen ecological and community resilience as climate changes continue. My thesis aims to provide West Virginia natural resources managers with climate vulnerability assessments that can be used to determine where and how conservation efforts should be administered. Additionally, I demonstrate a methodology that can be built upon …

Activity Patterns Of The Critically Endangered Central American River Turtle (Dermatemys Mawii), Cora Dyslin

Graduate Theses/Dissertations

The Central American River Turtle (Dermatemys mawii) is native to southern Mexico, eastern Guatemala, and Belize and is primarily restricted to watersheds that drain into the Gulf of Mexico and Caribbean Sea. Hunting, both for personal consumption and market meat, has been the primary driver of declines, and the species is now classified as critically endangered. Results from past studies that have used netting and visual surveys to detect D. mawii suggest that the species is chiefly nocturnal. However, it is unclear to what extent the perception of nocturnality has been biased by the timing of survey efforts …

Eavesdropping On Animals: Can Bioacoustics Help Save Species?, Zoe Grueskin

Capstones

Around the world, scientists are using sound to study the natural world in a growing field called bioacoustics. Researchers are eavesdropping on frogs and fish, elephants and earthworms, and many hope what they hear can inform and inspire conservation action around the world. From the field’s auspicious beginning with accidentally-recorded whales, to researchers today listening to locations as diverse as the Arctic seafloor and India’s Western Ghats mountain range, this capstone project explores the potential — and limitations — of conservation bioacoustics. Read the story, see photos and listen to audio pieces featuring three bioacousticians and their field recordings here: …

A Long-Term Vision For An Ecologically Sound Platte River, Andrew J. Caven, Melissa M. Mosier, Kristal Stoner, Bill Taddicken, Brice Krohn, Ashley Gramza, Craig R. Allen, Mike Carter, Michelle Koch, Kirk D. Schroeder, Sarah Bailey, Rich Walters, Brian C. Chaffin, Erica Gnuse, Amy Jones, Kate Bird

Zea E-Books Collection

The Platte River extends about 310 mi (499 km) from North Platte, Nebraska, to its terminus at the Missouri River confluence near Plattsmouth, Nebraska. The Platte River Valley is a continentally significant ecosystem that serves as a major stopover for migratory waterbirds in the Central Flyway including the endangered Whooping Crane (Grus americana) and >1 million Sandhill Cranes (Antigone canadensis) at the peak of spring migration. However, the Platte River Valley also supports a great diversity of avifauna including grassland breeding birds, native stream fish, vascular plants, herpetofauna, mammals, pollinators, and aquatic macroinvertebrates. Despite ongoing conservation …

Using Ai To Examine Nocturnal Moth Pollination, Conor Moriarty

Biological Sciences Undergraduate Honors Theses

The importance of insect-mediated agriculture cannot be understated especially in the wake of pollinator population declines. Most research of insect-mediated pollination is focused on diurnal pollinators like the honeybee (Apis mellifera). Deepening our understanding of how other pollinators, such as nocturnal pollinators, can benefit agriculture and ecosystems will be very important as honeybee populations decline. I explored nocturnal moth interactions with flowering apple flowers during their pollination season to better understand how these nocturnal pollinators interact with the plants. To accomplish this, I used a University of Arkansas farm area with a dedicated apple orchard. I gathered my raw data …

Spatiotemporal Factors Affecting The Occupancy And Phenology Of A Declining Songbird (Bachman's Sparrow - Peucaea Aestivalis) At The Western Extent Of Its Range, Liam G. Wolff

Electronic Theses and Dissertations

The Bachman’s Sparrow (Peucaea aestivalis) is a declining songbird that occurs throughout the southeastern United States. Bachman’s Sparrow is a Species of Greatest Conservation Need in Texas, but information crucial to management efforts, such as factors affecting their detectability and occupancy, is lacking. I investigated the predictors of Bachman’s Sparrow occupancy and phenology in Texas using detections from autonomous recording units coupled with site characteristics and weather data. My results indicate that Bachman’s Sparrow occupancy is associated with increasing herbaceous ground cover and decreasing basal area, distance to the nearest source population, and basal area when canopy height …

Behavioral Choices Of Apple Snails, Pomacea Maculata, Under Varied Chemical Landscapes, Andrea Adams

Theses

Habitat choice is a critical behavior for organisms to successfully survive and reproduce. These choices are dictated by available environmental information about potential predation risks or food patches that form the organism’s sensory landscape. This study specifically focused on the behavioral choices of two invasive apple snail (Pomacea maculata) populations exposed to varying predation threats. We collected snails from Florida and Alabama which were used in laboratory experiments with varied sensory landscapes. Trials consisted of controls with no cues (FL: n = 7, AL: n= 7), an attractive treatment with introduced food cues (FL: n = 4, AL: …

Conservation Status Assessment Of The Egg-Mimic Darter (Percidae: Etheostoma Pseudovulatum) Using A Multi-Faceted Approach, Zachary L. Wolf, John W. Johansen, Rebecca E. Blanton

Southeastern Fishes Council Proceedings

The imperiled Egg-mimic Darter (Etheostoma pseudovulatum) is a headwater-adapted fish restricted to an area less than 1000 km² in Tennessee. It is found in only six tributaries of the Duck River and the large, mainstem of this system may act as a barrier to dispersal, restricting population connectivity. The only status assessment of this species was over two decades ago; genetic diversity and the degree of population connectivity have never been evaluated. We conducted a conservation status assessment using a multi-faceted approach to better inform conservation management plans, including examining its current distribution, assessing habitat quality, estimating …

2022 Gray Wolf Questions And Answers, United States Fish And Wildlife Service

United States Fish and Wildlife Service: Publications

2022 Gray Wolf Questions and Answers

What does the February 10, 2022, ruling mean?

How does this ruling affect wolves in the Northern Rocky Mountains?

When does the court decision to vacate the delisting rule go into effect?

What is the legal status of gray wolves as of this ruling?

Is the Service continuing its status review of wolves in the western United States?

Is emergency listing an option for the Northern Rocky Mountain population?

Are wolf hunts going to stop as a result of the court decision?

How does this ruling affect wolves in Yellowstone National Park?

Where can …

Demographic Modeling Of Conservation Strategies For The Yosemite Toad (Anaxyrus Canorus), Corrina Rebecca Kamoroff

Cal Poly Humboldt theses and projects

The Yosemite toad (Anaxyrus canorus) is an anuran species endemic to the Sierra Nevada in California that, like many amphibians globally, has suffered population declines. The documented decline in A. canorus populations across their historic range highlights the need for an effective management strategy to protect the species from future extirpation. For this study, I estimated survival rates of A. canorus using a Cormack-Jolly-Seber model populated with data from a demographic study. I then used a female-only post-birth pulse stochastic Lefkovitch matrix model using vital rates I estimated and from the literature to simulate the effect of different …

A Systematic Map Of Human-Carnivore Coexistence, Cassandre C. Venumière-Lefebvre, Stewart W. Breck, Kevin R. Crooks

United States Department of Agriculture Wildlife Services: Staff Publications

Carnivore populations globally have largely declined, and coexistence, where humans and carnivores share landscapes, plays a crucial role in carnivore conservation. However, the term “coexistence” is often used in scientific and popular literature without being clearly defined. Herein, we provide a global perspective on what coexistence is and how it is studied. We conducted a systematic map of 366 articles published between 1987 and 2020 to characterize human-carnivore coexistence literature according to coexistence definitions, temporal trends, geographic and taxonomic focus, and four thematic aspects of coexistence: carnivore ecology, human endeavors, social conflict and human-carnivore conflict. We used chi-squared tests and …

Predictors Of Marine Genetic Structure In The Indo-Australian Archipelago, Udhi E. Hernawan, Paul S. Lavery, Gary A. Kendrick, Kor-Jent Van Dijk, Yaya I. Ulumuddin, Teddy Triandiza, Kathryn M. Mcmahon

Research outputs 2014 to 2021

The spatial genetic structure of marine organisms is related to dispersal and life-history traits, historical processes, current oceanographic connectivity and habitat features. Here, we assessed the relative importance of these factors for the genetic structure of a broad range of marine species in the Indo Australian Archipelago (IAA). We collated published data on 99 marine species from eight taxonomic groups (ascidians, fishes, molluscs, crustaceans, echinoderms, corals, reptiles, and marine plants) and used generalized linear models (GLMs) to estimate the best predictors of genetic structure. Genetic structure was characterized by FST and the number of genetic clusters over the study area. …

Assessing The Short-Term Effects Of Translocation On Freshwater Mussels: Is Habitat Or Water Quality More Important?, Joshua D. Arnold

Masters Theses

Freshwater mussels (Order: Unionida) are very important to the function of aquatic ecosystems and are typically indicators of good water quality. They provide a valuable link between the water column and the benthic substrate in which they live and are a valuable food resource for many species of animals. However, most species native to North America are currently threatened with extinction, to the point that more than 70% of native freshwater mussels are listed as either threatened or endangered at the state or federal level. The cause of this decline can be attributed to historical over exploitation, habitat alteration, and …

Decline In Amphibian Health In Local Stream, Elyse Vetter, Elise Dearment, Colton Russell, Audrey Fontes, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Many local streams of the Santa Monica Mountains are populated by the native California Newt, Taricha torosa, a species of special concern. Arroyo Sequit is one of these streams, the upper and lower portions of which are split by a culvert and the Mulholland Highway. This stream and the surrounding areas burned during the Woolsey fire of 2018. Since the fire, construction has been ongoing in and around the stream. Two years post-fire (during the summer of 2020) significantly more newts were found in the stream than years prior. A large proportion of these newts were unhealthy in appearance, …

Conspecific Aggression Of Invasive Crayfish, P. Clarkii, In Response To Chemical Cues, Elyse Vetter, Elise Dearment, Audrey Fontes, Gary Bucciarelli, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Red Swamp Crayfish, Procambarus clarkii, have caused vast damage to the stream ecosystem of the Santa Monica Mountains, following their invasive introduction. Through their extensive eating habits, high levels of aggression, and responsiveness to environmental stimuli, P. clarkii have a tremendous impact on the success of native species in the Santa Monica Mountains. With exposure to chemical cues, crayfish are able to perceive threats and react accordingly. To determine the extent of such chemoreception, pairs of P. clarkii were tested in the laboratory for conspecific aggression in the presence of native newt, native frog, and conspecific alarm cues. The …

The Effects Of Symbiote Ostracods On Invasive Crayfish Behavior, Audrey Fontes, Elyse Vetter, Gary Bucciarelli, Lee Kats

Seaver College Research And Scholarly Achievement Symposium

Invasive crayfish, Procambarus clarkii, are known to negatively impact the biodiversity of Santa Monica Mountain streams. Small symbiotes, ostracods, live on Procambarus clarkii in some local streams. However, their effect on the behaviour of invasive crayfish is unknown. We used an aqueous chlorobutanol solution to remove ostracods from crayfish. We paired control crayfish with those that had ostracods removed and scored aggressive interactions. Crayfish without ostracods were found to be significantly more aggressive towards crayfish with ostracods. When we compared feeding behavior, we found that crayfish without ostracods consumed food more quickly than control crayfish. We again subjected crayfish …

Great Expectations: Deconstructing The Process Pathways Underlying Beaver-Related Restoration, Caroline S. Nash, Gordon E. Grant, Susan Charnley, Jason B. Dunham, Hannah Gosnell, Mark B. Hausner, David S. Pilliod, Jimmy Taylor

United States Department of Agriculture Wildlife Services: Staff Publications

Beaver-related restoration is a process-based strategy that seeks to address wide-ranging ecological objectives by reestablishing dam building in degraded stream systems. Although the beaver-related restoration has broad appeal, especially in water-limited systems, its effectiveness is not yet well documented. In this article, we present a process-expectation framework that links beaver-related restoration tactics to commonly expected outcomes by identifying the set of process pathways that must occur to achieve those expected outcomes. We explore the contingency implicit within this framework using social and biophysical data from project and research sites. This analysis reveals that outcomes are often predicated on complex process …

Lepidopteran Granivory Reduces Seed Counts In A Rare Species Of Riparian Scour Prairies, Cheyenne Moore, Angela J. Mcdonnell, Scott Schuette, Christopher T. Martine

Faculty Journal Articles

In Pennsylvania Baptisia australis var. australis is found along only four waterways: the Allegheny River, Youghiogheny River, Clarion River, and Red Bank Creek. Because of its limited distribution and small number of extant populations, the species is considered state-threatened in Pennsylvania. In addition, the riparian prairie habitat that Pennsylvania Baptisia australis var. australis is restricted to is also in decline and considered vulnerable. Because of these conservation concerns, insights into the natural history of the taxon in the state is valuable and will inform conservation efforts. Field surveys and fruit collections along the Allegheny River and herbarium collections were used …

Evaluating Avian Occupancy On Sites Treated With Nrcs Conservation Practices Implemented To Benefit Cerulean (Setophaga Cerulea) And Golden-Winged Warblers (Vermivora Chrysoptera) In West Virginia, Lincoln R. Oliver

Graduate Theses, Dissertations, and Problem Reports (ETD)

The USDA - Natural Resources Conservation Service (NRCS) supports private lands conservation across the United States to benefit imperiled focal wildlife species using conservation practices to restore habitat. Through the Cerulean Warbler (Setophaga cerulea) Forestland Enhancement Project (CWAFEP) and the Working Lands for Wildlife (WLFW) Golden-winged Warbler (Vermivora chrysoptera) initiative, the NRCS provides technical and financial assistance to private landowners to implement conservation practices that follow science-based habitat management guidelines. Few research studies have evaluated focal species-specific occupancy on CWAFEP and/or WLFW sites, and research is required to inform each conservation project’s effectiveness in an adaptive …

Evaluating Potential Effects Of Solar Power Facilities On Wildlife From An Animal Behavior Perspective, Rachel Y. Chock, Barbara Clucas, Elizabeth K. Peterson, Bradley Blackwell, Daniel T. Blumstein, Kathleen Church, Esteban Fernández-Juricic, Gabriel Francescoli, Alison L. Greggor, Paul Kemp, Gabriela M. Pinho, Peter M. Sanzenbacher, Bruce A. Schulte, Pauline Toni

United States Department of Agriculture Wildlife Services: Staff Publications

Solar power is a renewable energy source with great potential to help meet increasing global energy demands and reduce our reliance on fossil fuels. However, research is scarce on how solar facilities affect wildlife. With input from professionals in ecology, conservation, and energy, we conducted a research-prioritization process and identified key questions needed to better understand impacts of solar facilities on wildlife. We focused on animal behavior, which can be used to identify population responses before mortality or other fitness consequences are documented. Behavioral studies can also offer approaches to understand the mechanisms leading to negative interactions (e.g., collision, singeing, …

Best Management Practices For Trapping Furbearers In The United States, H. Bryant White, Gordon R. Batcheller, Edward K. Boggess, Clifford L. Brown, Joseph W. Butfiloski, Thomas A. Decker, John D. Erb, Michael W. Fall, David A. Hamilton, Tim L. Hiller, George F. Hubert Jr., Matthew J. Lovallo, John F. Olson, Nathan M. Roberts

United States Department of Agriculture Wildlife Services: Staff Publications

Humans have used wild furbearers for various purposes for thousands of years. Today, furbearers are sustainably used by the public for their pelts, leather, bones, glands, meat, or other purposes. In North America, contemporary harvest of furbearers has evolved along with trap technologies and societal concerns, and is now highly regulated and more closely coupled with harvest analysis and population monitoring. Traps and regulated trapping programs provide personal or cultural rewards that can also support conservation, and can assist with advancing ecological knowledge through research, protecting endangered species, restoring populations or habitats, protecting personal property, and enhancing public health and …

Fish And Macroinvertebrate Response To Restoration And Conservation Efforts, Madison C. Cogar

Graduate Theses/Dissertations

Fish and macroinvertebrate response to restoration and conservation efforts varies in regards to the size and structure of the system (e.g. headwater streams in WV versus large rivers such as the Mississippi River). This project reviews fish and macroinvertebrate rebound in treated acid mine drainage (AMD) streams in WV as well as macroinvertebrate drift patterns in the Mississippi and Missouri Rivers. AMD is a product of a chemical reaction resulting in an acidic water outflow from mining sites, which may harm aquatic life. As a response, passive AMD treatment systems have been installed. I tested the effectiveness of remediation by …

Habitat Selection And Host Detection In The Salamander Mussel, Simpsonaias Ambigua, Eric A. Stegmann

Graduate Theses/Dissertations

The native freshwater mussels, Order Unionida, have suffered many species extinctions and loss of abundance. Two important threats to native mussels are loss of habitat and loss of access to the vertebrate hosts of the parasitic mussel larvae. The Salamander mussel, Simpsonaias ambigua, is a habitat specialist, living under flat rocks. It is often found in direct association with its only known host, the common mudpuppy, Necturus maculosus. This association could result from movement and habitat selection by the mussels themselves. Alternatively, it might result from the deposition of juveniles by a resident host. Habitat selection and host …

Genetic Structure Of Green Sea Turtle (Chelonia Mydas) Foraging Aggregations On The East Coast Of Florida, Monica R. Reusche

Honors Undergraduate Theses

The genetic structure of juvenile green turtles (Chelonia mydas) foraging on the east coast of central Florida is not well understood, nor has it been examined over time. In the last three decades, the dramatic increase in the number of green sea turtle nests in Florida, in association with other population parameters, has led to this species being down-listed under the Endangered Species Act from “endangered” to “threatened” in the northwest Atlantic. However, it was unclear if the exponential growth in Florida nest numbers had any influence on the genetic structure of juveniles in nearby foraging aggregations. To …

Distribution, Density, Movement, And Support For Management Of Mountain Sucker, Pantosteus Jordani, In The Black Hills Of South Dakota, Seth J. Fopma

Electronic Theses and Dissertations

Mountain Sucker, Pantosteus jordani, is a cold-water species native to the Intermountain West. Fringe populations of Mountain Sucker have experienced declines in recent decades. The population of Mountain Sucker found in the Black Hills of South Dakota represents the eastern fringe of the species’ native range. Recognized as both an indicator of biologic health and as a species of greatest conservation need in South Dakota, recent studies have suggested significant declines in both distribution and abundance. Despite the recent study of Mountain Sucker in the region, increased understanding of Mountain Sucker ecology is needed to effectively manage for the conservation …

Impact Of Uk Sport Fishing On Fish Welfare And Conservation, Tim Q. Holmes

Animal Sentience

Sport fishing or angling is the capture of fish for recreation or competition, i.e., for entertainment. Contrary to the claims of Key (2016), there is good evidence that fish feel pain and have the capacity for self-awareness (Sneddon et al., 2018; Woodruff, 2017). Wild fish experience a variety of adverse conditions in nature that can harm their welfare, but this does not justify humans intentionally inflicting such conditions on fish solely for our pleasure. This commentary summarises the many ways fish suffer harm to their welfare as a result of sport fishing. There are also discussions on associated activities that …

Conflicts And Triage, Kate E. Lynch, Daniel T. Blumstein

Animal Sentience

To represent diverse interests successfully, a strategy for dealing with conflicts is needed. We discuss an approach to maximizing the interests of the greatest number of individuals, present and future.