Terrestrial and Aquatic Ecology Commons^™

Aquatic Macrophyte Communities In Five Sibley County (Minnesota) Lakes And The Factors That Affect Their Distribution, Samuel A. Schmid

All Graduate Theses, Dissertations, and Other Capstone Projects

The purposes of this study are to 1) quantify the shifts in the macrophyte community structure of five lakes in Sibley County, and 2) to assess the relationships between the macrophyte communities and abiotic factors in these five lakes. In both the early and late growing season of 2019, point-intercept surveys were conducted on High Island Lake, Titlow Lake, Schilling Lake, Silver Lake, and Clear Lake. At each point, water depth was recorded, and all macrophytes sampled were identified and recorded as “present.” There was not a late season survey conducted for High Island Lake in 2019 due to a …

Evaluation Of Methods For The Restoration Of Native Grasslands On Abandoned Center Pivots In The Sandsage Prairies Of Southwestern Kansas, Alonso Barragan-Martinez

Master's Theses or Doctor of Nursing Practice

Throughout southwestern Kansas thousands of acres of native grassland have been converted to cropland for agricultural use, reducing native prairie by over 60% in the sandsage prairie. Due to low precipitation and arid conditions, much of these croplands are irrigated by center pivot irrigation systems fed by the Ogallala Aquifer. These fields are abandoned when the aquifers dry up, resulting in erosion of the unused farmland. Conservation programs such as the Conservation Reserve Enhancement Program (CREP) were established to address this problem but have been unsuccessful in restoring native grasslands in abandoned croplands in southwestern Kansas. We hypothesized that insect …

Persistence Of Biogeochemical Alterations Of Deep-Sea Sediments By Bottom Trawling, S. Paradis, M. Goñi, Pere Masqué, R. Durán, M. Arjona-Camas, A. Palanques, P. Puig

Research outputs 2014 to 2021

Bottom trawling grounds have been expanding to deeper areas of the oceans since the mid-XXth century, and mitigating strategies aimed to protect fish stocks, such as temporal trawling closures, have recently been implemented. Here we investigated the biogeochemical properties of sediment from a deep-sea trawling ground in Palamós Canyon (NW Mediterranean) to assess the effects of a 2-months trawling closure in the recovery of sedimentary organic matter. In comparison to untrawled areas, the continuous erosion and sediment mixing in trawling grounds led to coarser reworked sediments impoverished in organic carbon (∼30% loss) and promoted the degradation of labile compounds (52–70% …

Natural Habitat Of Bali Starling (Leucopsar Rothschildi) In Bali Barat National Park, Indonesia, Sutomo Sutomo, Eddie Van Etten

Research outputs 2014 to 2021

The Indonesian tropical savannas and dry forests provide habitats to various endemic wildlife. Unfortunately, a few of these endemic species are now seriously threatened and are red listed in the conservation status of International Union for Conservation of Nature (IUCN). Among these species, the Bali starling or Bali mynah Leucopsar rotschildi, locally known as Jalak Bali, is now mostly restricted to the Bali Barat National Park. Given the high extinction risk faced by such species, conservation programs require multidisciplinary approaches that would address both the biological attributes of the species itself and their habitat requirements. Regrettably, for many species, their …

Factors Driving The Compositional Diversity Of Apis Mellifera Bee Venom From A Corymbia Calophylla (Marri) Ecosystem, Southwestern Australia, Daniela Scaccabarozzi, Kenneth Dods, Thao T. Le, Joel P. A. Gummer, Michele Lussu, Lynne Milne, Tristan Campbell, Ben Pan Wafujian, Colin Priddis

Research outputs 2014 to 2021

Bee venom (BV) is the most valuable product harvested from honeybees ($30 - $300 USD per gram) but marginally produced in apiculture. Though widely studied and used in alternative medicine, recent efforts in BV research have focused on its therapeutic and cosmetic applications, for the treatment of degenerative and infectious diseases. The protein and peptide composition of BV is integral to its bioactivity, yet little research has investigated the ecological factors influencing the qualitative and quantitative variations in the BV composition. Bee venom from Apis mellifera ligustica (Apidae), collected over one flowering season of Corymbia calophylla (Myrtaceae; marri) was characterized …

Kelp-Associated Microbes Facilitate Spatial Subsidy In A Detrital-Based Food Web In A Shoreline Ecosystem, Charu Lata Singh, Megan J. Huggett, Paul S. Lavery, Christin Säwström, Glenn A. Hyndes

Research outputs 2014 to 2021

Microbes are ubiquitous but our knowledge of their effects on consumers is limited in benthic marine systems. Shorelines often form hotspots of microbial and detritivore activity due to the large amounts of detrital macrophytes that are exported from other coastal ecosystems, such as kelp forests, and accumulate in these systems. Shoreline ecosystems therefore provide a useful model system to examine microbial-detritivore interactions. We experimentally test whether bacteria in the biofilm of kelp provide a bottom-up influence on growth and reproductive output of detritivores in shorelines where detrital kelp accumulates, by manipulating the bacterial abundances on kelp (Ecklonia radiata). The growth …

An Evaluation Of Antiparasitics Used To Treat The Sea Louse, Caligus Rogercresseyi, In Chilean Salmonid Farming, Dayla Woller

Scripps Senior Theses

Sea lice pose a global threat to open-net salmonid farming. As Chile is the second largest Atlantic salmon producer, they have a vested interest in mitigating infestations and increasing production. However, this will not be possible without 1) increased research on the underlying mechanisms behind sea lice infestations that will inform 2) governmental regulation of salmon farming. This increase in research and governmental regulation will only be possible through transparency on pesticide practices and sea louse monitoring data from companies operating in Chile. Taking these steps would bring Chile closer to being the largest producer of Atlantic salmon and an …

Global Connectivity Of Southern Ocean Ecosystems, Eugene J. Murphy, Nadine M. Johnston, Eileen E. Hofmann, Richard A. Phillips, Jennifer A. Jackson, Andrew J. Constable, Sian F. Henley, Jessica Melbourne-Thomas, Rowan Trebilco, Rachel D. Cavanagh, Geraint A. Tarling, Ryan A. Saunders, David K.A. Barnes, Daniel P. Costa, Stuart P. Corney, Ceridwen I. Fraser, Juan Höfer, Kevin A. Hughes, Chester J. Sands, Sally E. Thorpe, Philip N. Trathan, José C. Xavier

CCPO Publications

Southern Ocean ecosystems are globally important. Processes in the Antarctic atmosphere, cryosphere, and the Southern Ocean directly influence global atmospheric and oceanic systems. Southern Ocean biogeochemistry has also been shown to have global importance. In contrast, ocean ecological processes are often seen as largely separate from the rest of the global system. In this paper, we consider the degree of ecological connectivity at different trophic levels, linking Southern Ocean ecosystems with the global ocean, and their importance not only for the regional ecosystem but also the wider Earth system. We also consider the human system connections, including the role of …

Nitrogen Dynamics And Transport Along Flowpaths In A Rural Wetland-Stream Complex, Colton Kyro

Graduate Student Theses, Dissertations, & Professional Papers

Human activities have doubled the rate of nitrogen inputs onto the landscape resulting in elevated nitrogen concentrations in our streams. Anthropogenically applied nitrogen is largely transported to stream networks via groundwater movement. Groundwater discharge occurs in distinct points along a stream but whose influences can often persist far beyond that area due to insufficient biogeochemical removal of imported nitrogen potentially causing alterations in community structure and precipitating large algae blooms. To understand the factors governing nitrogen abundance in a historical polluted stream, I used a mass-balance approach to quantify groundwater-surface water interaction and the magnitude of groundwater nitrogen input and …

An Ecological Comparison Between Resource Subsidies: Pacific Lamprey (Entosphenus Tridentatus) And Pacific Salmon (Oncorhynchus Spp.), Jocelyn Wensloff

All Master's Theses

Historically, oligotrophic Pacific Northwest (PNW) streams received annual returns of spawning anadromous fish that provided resource subsidies in the form of marine-derived nutrients (MDN), thus driving stream food web productivity. To date, many studies in the PNW have focused on Pacific salmon (Oncorhynchus spp.) as a resource subsidy, overlooking other anadromous fish species such as Pacific lamprey (Entosphenus tridentatus). Both Pacific salmon and Pacific lamprey are culturally important to PNW tribes for ceremonial, medicinal, and subsistence purposes, and have been since time immemorial. Unfortunately, both salmon and lamprey populations are in decline. Historically, lamprey have been disregarded …

Assessing The Role Of Disturbance In Estuarine Fish Community Dynamics, Dakota Lewis

Electronic Theses and Dissertations, 2020-2023

Ecological disturbances alter biotic communities and ecosystems. In many coastal zones disturbances are increasing, including algal blooms, storms, hypoxic events, and fish kills. These disturbances are often related, for example blooms releasing toxins or depleting dissolved oxygen, ultimately killing fish. Depending on the intensity, duration, and geographic extent of a disturbance, the fish community can take days to years to recover from disturbances. To explore the relationships among environmental disturbances, sport fish, and forage fish communities, this thesis examined two Florida estuaries with differing disturbance regimes. Using an ensemble modelling approach combining generalized linear models (GLM), Bayesian modelling, and Bayesian …

Factors Influencing Aquatic Invertebrate Diversity In Mine Pit Lakes Along The Mesabi Iron Range, Jeremy Laurich

Journal of Earth and Life Science

Restoration of mine pit lakes for recreation is going to be very important for the future of Minnesota’s Mesabi Iron Range area. As many as 250 lakes will need to be restored in the future along this 100-kilometer-long swath of mining country. Information regarding the organisms that currently inhabit these lakes is important for future restorations to be a success. The focus of this study was to identify the types of aquatic invertebrates present in pit lakes and to identify some of the factors that influence their abundance and diversity. During this study, invertebrate samples were taken along the shore …

Is There A Relationship Between Aquatic Vegetation And Amphipod Stocking Mortality?, Alaina Taylor

Journal of Earth and Life Science

Amphipod occurrence and abundance has declined in the Prairie Pothole Region (PPR). Wildlife managers have stocked prairie pothole wetlands with Gammarus lacustris since 2018 to establish self-sustaining populations. G. lacustris have been detected in only 2 of 22 stocked basins, suggesting that they have died or failed to reproduce in most stocking attempts. Aquatic plant surveys were conducted in stocked wetlands and compared to data from surveys of wetlands with naturally occurring populations to understand if G. lacustris would be expected to survive in stocked wetlands based on characteristics of the aquatic vegetation communities. SAV coverage was significantly higher in …

Predicting Total Length Of Fish In Minnesota Lakes Using Bony Structure Dimensions, Jay Holland

Journal of Earth and Life Science

This study seeks to establish a relationship between a fish’s total length to the size of various bony structures of prey fishes. Three important prey fish species in Minnesota were selected for examination in this study, including Black Crappie Pomoxis nigromaculatus, Bluegill Lepomis macrochirus, and Yellow Perch Perca flavescens. Length and weight dimensions of each fish’s otoliths, cleithra, and vertebrae were associated to total lengths of the fish they came from. In many dietary studies, the need for these relationships is strongly related to the disfigurement or degradation of prey fish in stomach samples. With accurate enough regression equations, researchers …

Abiotic Factors Effect On Summertime Fish Sampling, Kyle Oxley

Journal of Earth and Life Science

Fish surveys are vital in understanding various information about a fishery. Surveys lay the groundwork to how an agency views the status of the fishery, are used to set appropriate regulations, and manage stocking. Understanding which areas of a fishery holds the greatest density of fish is key to achieving the most accurate sample that reflects the fishery. The objective of this study was to track fish densities throughout the summer of 2021 and establish if there is a relationship between high fish density locations and specific water column characteristics. Fish density, temperature, and dissolved oxygen were measured bimonthly at …

Burbot Post-Spawn Diet, Madison Gibson

Journal of Earth and Life Science

Burbots have become an increasingly popular game fish among anglers and have become a strong predator within the systems, consuming a wide variety of organisms. Therefore, the objective of this study was to compare male and female burbots diets post-spawn in a system. Burbots angled from Bad Medicine Lake were sacrificed and the stomach contents were observed, categorized by the lowest taxonomic key, and then weighed in grams. Percent by weight was calculated for each category of organisms and presented in a pie charts. In all three analyses, crustaceans were the main source of the diet structure at more than …

Exploring The Genetic Variability Of Zebra Mussels Dreisenna Polymoprha, Maxwell Carr

Journal of Earth and Life Science

Zebra Mussels Dreisenna polymorpha are one of the most well-known invasive species here in the United States. This species can take over watersheds very quickly, causing damage to both the ecosystem and man-made structures. The basic physical behavior of this species has been well documented, but the invasive North American Zebra Mussel is much more aggressive and therefore causes more damage in the Great Lakes region compared to its native waters. Genetic variation may be playing a very large role in how and why D. polymorpha is causing such large problems for stakeholders in the United States. This review cites …

Effectiveness Of Endothall Treatment In Reducing Potamogeton Crispus In Lake Julia, Jake Sorensen

Journal of Earth and Life Science

Curly leaf pondweed Potamogeton crispus, is a submerged aquatic plant non-native to North America. It was most likely introduced when common carp Cyprinus carpio were intentionally brought to the Midwest. Endothall is an aquatic herbicide commonly used to control curlyleaf pondweed in lakes. This study focused on collecting data from Lake Julia in Sherburne County, MN. Lake Julia is treated annually in the spring to control curlyleaf pondweed. The results show treatment areas saw a significant increase in vegetation density compared to control areas (P < 0.01). Changes in percent vegetation coverage by date were insignificant (P = 0.24). No significant signs of fish kills were observed. Because this study looked at overall vegetation coverage instead of specifically curlyleaf pondweed, we cannot conclude the increase in vegetation coverage was from curlyleaf pondweed alone. Based on the results from Poovey et al. (2002) we would expect lower vegetation coverage in treatment areas instead of the increased vegetation coverage observed in our study. This suggests the possibility that the endothall treatment successfully killed curlyleaf pondweed in treated areas, which allowed for new growth of submerged aquatic plants to take place as water temperatures increased.

Embracing Dynamic Models For Gene Drive Management, Andrew J. Golnar, Emily W. Ruell, Alun L. Lloyd, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Robust methods of predicting how gene drive systems will interact with ecosystems is essential for safe deployment of gene drive technology. We describe how quantitative tools can reduce risk uncertainty, streamline empirical research, guide risk management, and promote cross-sector collaboration throughout the process of gene drive technology development and implementation.

Gene drive technologies, although diverse in design and mode of action, are molecular architectures that promote the transmission of genetic information between generations. In theory, the release of one gene-drive-modified organism (GDMO) has the potential to irreversibly alter species, ecosystems, and environmental processes at a global scale (although in practice …

Economic Effects Of Predation By Scaup On Baitfish And Sportfish Farms, Carole R. Engle, Stephen Clements, Brian S. Dorr, J. Brian Davis, Luke A. Roy, Anita M. Kelly

United States Department of Agriculture Wildlife Services: Staff Publications

Fish-eating birds have been found to consume baitfish and sportfish raised on farms in the United States. Understanding the on-farm economic effects of such wildlife conflicts is essential for wildlife management agencies to make informed decisions. Lesser scaup, while not widely considered a fisheating bird, will consume farmed fish. Baitfish and sportfish farms in Arkansas (the major baitfish and sportfish producingstate in the U.S.) were surveyed to gather data on the cost of protecting farm crops from scaup. The values of lost sales revenue from the various species of baitfish and sportfish consumed by scaup were estimated based on a …

Evidence On The Effectiveness Of Small Unmanned Aircraft Systems (Suas) As A Survey Tool For North American Terrestrial, Vertebrate Animals: A Systematic Map Protocol, Jared A. Elmore, Michael F. Curran, Kristine O. Evans, Sathishkumar Samiappan, Meilun Zhou, Morgan B. Pfeiffer, Bradley F. Blackwell, Raymond B. Iglay

United States Department of Agriculture Wildlife Services: Staff Publications

Background: Small unmanned aircraft systems (sUAS) are replacing or supplementing manned aircraft and groundbased surveys in many animal monitoring situations due to better coverage at finer spatial and temporal resolutions, access, cost, bias, impacts, safety, efficiency, and logistical benefits. Various sUAS models and sensors are available with varying features and usefulness depending on survey goals. However, justification for selection of sUAS and sensors are not typically offered in published literature and existing reviews do not adequately cover past and current sUAS applications for animal monitoring nor their associated sUAS model and sensor technologies, taxonomic and geographic scope, flight conditions and …

Rabies Post-Exposure Healthcare-Seeking Behaviors And Perceptions: Results From A Knowledge, Attitudes, And Practices Survey, Uganda, 2013, Sarah C. Bonaparte, Laura Adams, Barnabas Bakamutumaho, Galileu Barbosa Costa, Julie M. Cleaton, Amy Gilbert, Modupe Osinubi, Emily G. Pieracci, Sergio Recuenco, Victor Tugumizemu, Joseph Wamala, Ryan M. Wallace

United States Department of Agriculture Wildlife Services: Staff Publications

Background Rabies is a viral disease of animals and people causing fatal encephalomyelitis if left untreated. Although effective pre- and post-exposure vaccines exist, they are not widely available in many endemic countries within Africa. Since many individuals in these countries remain at risk of infection, post-exposure healthcare-seeking behaviors are crucial in preventing infection and warrant examination.

Methodology A rabies knowledge, attitudes, and practices survey was conducted at 24 geographically diverse sites in Uganda during 2013 to capture information on knowledge concerning the disease, response to potential exposure events, and vaccination practices. Characteristics of the surveyed population and of the canine-bite …

Differing Alterations Of Odor Volatiles Among Pathogenic Stimuli, Patrick Millet, Talia Martin, Maryanne Opiekun, Gary K. Beauchamp, Bruce A. Kimball

United States Department of Agriculture Wildlife Services: Staff Publications

Alterations of the volatile metabolome (the collection of volatiles present in secretions and other emanations) that occur in response to inflammation can be detected by conspecifics and chemometric analyses. Using a model system where mouse urinary metabolites are altered by treatment with lipopolysaccharide (found in the outer cell membrane of gram-negative bacteria), we hypothesized that alteration of body odor volatiles will vary according to the pathogen responsible for inducing the inflammation. We tested this hypothesis by treating mice with different immunogens that engage different immune signaling pathways. Results suggest that alterations of body odor volatiles resulting from inflammation do contain …

Using Object-Based Image Analysis To Detect Laughing Gull Nests, Benjamin F. Martini, Douglas A. Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Remote sensing has long been used to study wildlife; however, manual methods of detecting wildlife in aerial imagery are often time-consuming and prone to human error, and newer computer vision techniques have not yet been extensively applied to wildlife surveys. We used the object-based image analysis (OBIA) software eCognition to detect laughing gull (Leucophaeus atricilla) nests in Jamaica Bay as part of an ongoing monitoring effort at the John F. Kennedy International Airport. Our technique uses a combination of high resolution 4-band aerial imagery captured via manned aircraft with a multispectral UltraCam Falcon M2 camera, LiDAR point cloud data, and …

Life History And Microbiome Analysis Of Freshwater Fingernail Clams (Sphaeriidae) Exposed To Trace Metal Pollution, Dechen D. Edwards

EWU Masters Thesis Collection

Aquatic habitats impacted by anthropogenic activities such as mining can contain metal mixtures of nonessential and essential trace metals. The consequences of chronic exposure to metal mixtures on the life history of benthic organisms are unclear, as are the potential effects on host-associated microbial communities. I use an energy-budget based methodology to ask whether exposure to metal mixtures influences the life histories of freshwater fingernail clams (Sphaeriidae) and if fingernail clams are selecting a different microbial community if chronically exposed to metal mixtures than if in a site that is not impacted by metal pollution. Fingernail clams are small, cosmopolitan, …

Concentration And Composition Of Nanoparticles And Colloidal Particles In A Mine-Waste Contaminated River, Kaitlin Rose Perkins

Graduate Student Theses, Dissertations, & Professional Papers

Metals and metalloids (metal(loid)s) in aquatic ecosystems are often described through measures of their concentrations in whole and filtered waters. The filtered fraction is operationally defined as “dissolved,” and assumed to be primarily composed of free metal(loid) ions or of ions bound by low molecular weight organic matter. This definition ignores that the dissolved fraction also likely contains colloidal particles (1 to 1000 nm) that can pass through commonly used filters. This colloidal fraction can also be preferentially removed from the water column by algae and other aquatic organisms compared to free metal(loid) ions and organic bound metal(loid)s. Though they …

The Expansion Of Shrimp Farms In The Gulf Of California And Potential For Restoration To Support Migratory Waterbirds, Miles Scheuering

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Wintering and stopover areas provide crucial habitat for migratory birds yet are often understudied. The estuaries of Sonora and Sinaloa on the Gulf of California in Mexico provide critical wintering and stopover sites for migratory waterbirds in the Pacific Flyway. Shrimp farms are the greatest threat to these areas and their full impact is not well understood but they provide poor habitat for waterbirds. A significant portion of existing farms may be abandoned based on a disparity between active area reported by the Sonora and Sinaloa state commissions and observed area based on remote sensing. Abandoned farms represent potential area …

Metagenomic Identification And Classification Of The Mercury-Methylating Gene Hgca In Response To Water Table And Plant Functional Group Manipulations In Peat Soil, Madeline Peterson

Dissertations, Master's Theses and Master's Reports

Methyl-mercury (MeHg) is a potent neurotoxin that threatens the health of humans and wildlife alike. Climate warming threatens to shift regional precipitation and climate regimes in peatland environments, which could destabilize northern peatlands and accelerate both Hg release from soil and MeHg production. Peatlands are among the leading hotspots for MeHg, yet little is known about the community composition or functional relationship of mercury-methylating microbes in response to varying environmental conditions. The recognized mercury-methylating genes responsible for this activity are the obligatory gene pair hgcA and hgcB. Metagenomic data from the full-factorial peatland mesocosm experiment PEATcosm was obtained to …

Effects Of Harvest Regulations And Post-Release Hooking Mortality On Walleye Populations In South Dakota, Cade Lyon

Electronic Theses and Dissertations

Harvest regulations are commonly implemented to manipulate fisheries stocks. By regulating the size and number of fish that are harvested by anglers, managers are able to meet the goals and needs of regions. However, these management actions come with the potential for negative consequences. Overexploitation due to less restrictive harvest regulations can cause collapses in fisheries populations. In addition, indirect consequences such as hooking mortality brought on by length-based regulations can also be detrimental to populations. In this study, I investigated the effects of various harvest regulations on Walleye populations in three western South Dakota irrigation reservoirs: Angostura, Belle Fourche, …

Mycorrhizal Type Dictates Soil Microbial Diversity And Function And The Integrated Root-Microbial Response To Water Stress In Temperate Forests, Nanette C. Raczka

Graduate Theses, Dissertations, and Problem Reports (ETD)

Our understanding of the mechanisms that control the magnitude of the temperate forest carbon (C) sink and its response to global change remain uncertain. Much of this uncertainty lies in the extent to which differences between tree species in their mycorrhizal symbionts and corresponding nutrient acquisition strategies control the activity of soil microbes that mobilize nutrients and decompose soil organic matter. ECM trees allocate substantial amounts of C to ECM fungi and rhizosphere microbes to mine soil organic matter for nutrients. By contrast, AM trees invest less C belowground and rely on AM fungi to scavenge for nutrients. While these …