Terrestrial and Aquatic Ecology Commons^™

Species Distribution Modeling Of North American Odonates, Rebecca Beilinson

Library Map Prize

Species distribution modeling, which uses species-environment relationships to predict species’ geographic ranges, is a powerful technique for biogeographical and ecological analysis as well as for conservation planning. However, it has typically been underutilized for invertebrates and for freshwater species, as modeling these groups can pose unique challenges. Here I present methods for modeling odonate distributions and demonstrate these methods for four North American species. I show that incorporating expert-derived range maps as spatial priors can significantly improve model performance as compared to MaxEnt models. I also introduce a new distance to freshwater layer as an environmental variable, and show that …

Activity Patterns, Home Range, And Microhabitat Selection Of A Terrestrial Turtle (Rhinoclemmys Rubida Perixantha) In A Tropical Dry Forest, Taggert G. Butterfield

All Master's Theses

Turtles are in trouble worldwide, with nearly half recognized by the International Union for Conservation of Nature (IUCN) as needing special protection. The Eurasian pond and Neotropical wood turtles of the family Geoemydidae are the most diverse turtles and comprise ¼ of all turtle species yet basic information on their natural history is lacking. Moreover, seasonal tropical dry forest (SDTF), where many geoemydids exist, is considered the most endangered ecosystem in the world. We investigated the activity patterns, home range size, and microhabitat selection of the Mexican Spotted Wood Turtle (Rhinoclemmys rubida perixantha) in its SDTF habitat by …

Testing The Forage Preference Of The American Pika (Ochotona Princeps) For Use In Connectivity Corridors In The Washington Cascades, Carly Wickhem, Kristina Ernest

All Master's Theses

One of the aims of the Snoqualmie Pass East Project (SPEP) in the Cascades of central Washington is to construct nearly 30 wildlife crossing structures along a 15-mile stretch of Interstate-90. American pikas (Ochotona princeps) are being monitored for the SPEP because they have specific habitat requirements and are poor dispersers. Making the crossing structures “pika-friendly” will encourage these low-mobility animals to use the structures. Recent research suggests that the presence of quality vegetation may help pika populations avoid declines and extirpations, so planting suitable forage within and adjacent to the crossings will be essential. During the summer …

Synthesis Of Satellite Microwave Observations For Monitoring Global Land-Atmosphere Co2 Exchange, Lucas Alan Jones

Graduate Student Theses, Dissertations, & Professional Papers

This dissertation describes the estimation, error quantification, and incorporation of land surface information from microwave satellite remote sensing for modeling global ecosystem land-atmosphere net CO₂ exchange. Retrieval algorithms were developed for estimating soil moisture, surface water, surface temperature, and vegetation phenology from microwave imagery timeseries. Soil moisture retrievals were merged with model-based soil moisture estimates and incorporated into a light-use efficiency model for vegetation productivity coupled to a soil decomposition model. Results, including state and uncertainty estimates, were evaluated with a global eddy covariance flux tower network and other independent global model- and remote-sensing based products.

An Investigation Of Juvenile Alewife (Alosa Pseudoharengus) Habitat Use And Growth Using Natural Markers, Gregory Norman Labonte Ms

All Student Scholarship

This research attempts to connect patterns in growth and migration of an anadromous species. The goal of this research was to understand habitat movements and growth of juvenile alewives (Alosa pseudoharengus) in the Penobscot Estuary and Bay through the use of otolith microchemistry, otolith growth increments, and a laboratory stable isotope turnover study. Understanding the connection between growth and movement of juvenile alewives may lead to more accurate and sophisticated conservation and restoration methods for anadromous species.

Anthropogenic Influence On Blackfin Sucker (Thoburnia Atripinnis) Distribution, In The Upper Barren River System, Kentucky And Tennessee, Christa Rose Hurak

Online Theses and Dissertations

We evaluated the effects of land use and cover on endemic blackfin sucker (Thoburnia atripinnis) catch per unit effort and abundance within the Upper Barren River (UBR) system, a priority conservation area, in south-central Kentucky. Anthropogenic impacts have rendered T. atripinnis a “species of greatest conservation need” by the Kentucky Department of Fish and Wildlife Resources. This study focused on determining if land use surrounding blackfin sucker sampling sites and certain physicochemical parameters could be impacting their inhabitance at these sites. Data collection and ground truthing occurred between September 2015 and June 2016. ArcGIS was used to extract land use …

Amphibian Community Composition And Disease Susceptibility In Ridge-Top Wetlands Of The Daniel Boone National Forest, Audrey Lauren Mctaggart

Online Theses and Dissertations

Ephemeral wetlands are a natural feature of the ridge-top ecosystem in the Daniel Boone National Forest (DBNF) in eastern Kentucky, and support a diverse amphibian assemblage characterized by species with short larval periods. However, hundreds of hydrologically permanent ponds have been constructed along the ridge-top system in the last 50 years. The results of previous studies suggest that constructed ponds act as sinks for some historic ridge-top species because they provide habitat for amphibian predators with long larval periods or aquatic adult stages. My objectives were to determine (1) if natural wetlands differ from constructed wetlands in amphibian community composition, …

Biotic Assessment Of Two Central Kentucky Streams: Examining The Effects Of Wastewater Treatment And Anthropogenic Disturbance, Daniel John Ratterman

Online Theses and Dissertations

Globally, anthropogenic disturbance has altered many aquatic habitats, including lotic waters. Flowing, fresh water sustains life on Earth yet suffers the resulting waste products. Native, locally adapted ecosystems integrate or eliminate the byproducts of life. However an increase of human population, poor agricultural practices, accelerated overland runoff, a non-point source of pollution, and wastewater treatment plants (WTP), a point source of pollution, have all placed a strain on the world’s flowing, fresh, waters. The de-commissioning of two WTPs in the Kentucky River basin, and the commissioning of a new WTP in an adjacent watershed, provided an opportunity to examine the …

A Vegetation-Based Index Of Biotic Integrity For Wetlands Of Kentucky, Noelle Newman Smith

Online Theses and Dissertations

Wetland ecosystems have experienced severe declines across the United States, prompting efforts to assess the status of remaining wetlands and regulate their development. The Clean Water Act and the policy of “No Net Loss” have resulted in a system of permitting and mitigation for impacts to wetlands. Professional judgments of wetland quality are inherent in regulatory decisions related to preservation and mitigation, but many states, and until recently including Kentucky, have no standard, quantifiable means of assessing wetlands to guide the decision process. A rapid assessment method has recently been developed for Kentucky, but there is no intensive assessment method …

Movement Patterns Of The Kentucky Arrow Darter (Etheosotma Spilotum), Frecklebelly Darter (Percina Stictogaster), And Southern Redbelly Dace (Chrosomus Erythrogaster) In Elisha Creek And Gilbert's Big Creek, Red Bird River, Kentucky., Colin Arnold

Online Theses and Dissertations

The movement patterns of small-bodied fishes in headwater streams are poorly understood. This study was designed to examine the movement patterns of the Kentucky Arrow Darter (Etheosotma spilotum), Frecklebelly Darter (Percine stictogaster), and Southern Redbelly Dace (Chrosomus erythrogaster) in two dynamic headwater streams, Elisha Creek and Gilbert's Big Creek, in the Red Bird River, Kentucky, utilizing Passive Integrated Transponders and an antennae detection system. Etheostoma spilotum is listed as a threatened species under the Endangered Species Act. Percina stictogaster is acknowledged as a species of greatest conservation need in Kentucky by the Kentucky Department of Fish and Wildlife Resources. Over …

Wetland Condition Matters: Amphibian Richness And Abundance Change Across Wetland Condition Gradient, Kari Dupler

Online Theses and Dissertations

In the past century, Kentucky has lost more than 80% of its wetlands, and because state-wide monitoring was historically minimal, this number is likely underestimated. The Kentucky Division of Water, with Eastern Kentucky University and a technical working group, developed a rapid wetland assessment method (i.e. KY-WRAM) to assess wetland quality and aid in establishing mitigation levels and long-term monitoring. Validation of the KY-WRAM’s ability to reflect wetland condition requires comparison to intensive biotic assessments of amphibian, plant, and bird communities. Wetland and amphibian surveys for the 2014 and 2015 seasons were conducted at 42 riverine wetlands in the Kentucky …

Population Genetic Structure Of Necturus Maculosus In Central And Eastern Kentucky, Mason Owen Murphy

Theses and Dissertations--Biology

Population structure is influenced by extrinsic factors, such as landscape architecture and dispersal barriers. Lotic network architecture is known to constrain ecological, demographic and evolutionary processes, including population genetic structure. I assessed the population structure of a widespread aquatic salamander, Necturus maculosus, across three river basins in central and eastern Kentucky. I examined the role of network architecture, anthropogenic barriers, and spatial scale on patterns of population structure. I also provided a review of N. maculosus capture methods and offer an improved trap design. I identified significant structuring between the combined Licking/Kinniconick basin and the Kentucky River basin, with …

Territoriality And Inter-Pack Aggression In Gray Wolves: Shaping A Social Carnivore's Life History Rudyard Kipling's Law Of The Jungle Meets Yellowstone's Law Of The Mountains, Kira A. Cassidy, Douglas W. Smith, L. David Mech, Daniel R. Macnulty, Daniel R. Stahler, Matthew C. Metz

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

When Rudyard Kipling wrote The Jungle Book in 1894 and included the famous line "For the strength of the Wolf is the Pack, and the strength of the Pack is the Wolf," he would have had no idea that over a century later, scientific research would back up his poetic phrase. Recent studies in Yellowstone have found that both the individual wolf and the collective pack rely on each other and play important roles in territoriality. At a time when most fairy tales and fables were portraying wolves as demonic killers or, at best, slapstick gluttons, Kipling seemed to have …

Wolf (Canis Lupus) Generation Time And Proportion Of Current Breeding Females By Age, L. David Mech, Shannon M. Barber-Meyer, John Erb

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Information is sparse about aspects of female wolf (Canis lupus) breeding in the wild, including age of first reproduction, mean age of primiparity, generation time, and proportion of each age that breeds in any given year. We studied these subjects in 86 wolves (113 captures) in the Superior National Forest (SNF), Minnesota (MN), during 1972–2013 where wolves were legally protected for most of the period, and in 159 harvested wolves from throughout MN wolf range during 2012–2014. Breeding status of SNF wolves were assessed via nipple measurements, and wolves from throughout MN wolf range, by placental scars. In …

The Effects Of Tidal Forcing On Nutrient Fluxes In The Tidal, Freshwater James River Estuary, Va, Dana L. Devore

Theses and Dissertations

A 12-month study (January to December 2015) focused on the effects of tidal forcing on nutrient fluxes in the tidal, freshwater segment of the James River Estuary (JRE). Discrete sampling of nutrient chemistry and continuous monitoring of tidal discharge were used to determine the volume and timing of the tides, and differences in nutrient concentrations between incoming and outgoing tides. The goal of this study was to improve understanding of tidal influence on nutrient fluxes and their role in nutrient transport to the lower estuary. Results suggested that differences in nutrient concentrations between incoming and outgoing tides were small throughout …

From Seed To Sky: Impacts Of Explosive Compounds On Vegetation Across Spatial And Developmental Scales, Stephen M. Via

Theses and Dissertations

Explosive compounds are broadly distributed across the globe as a result of nearly two centuries of munitions use in warfare and military activities. Two explosive compounds have seen disproportionate use; RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) and TNT (2-methyl- 1,3,5-trinitrobenzene), being the most commonly found explosives in the environment. The effects of explosives on biota have been studied in great detail; however, there is a general lack of understanding with regard to broader ecological impacts of these contaminants. My dissertation objective was to follow the impacts of explosive compounds on vegetation across scales. Impacts on vegetation at the species scale alter community composition via …

Assemblage Structure, Production, And Food Web Dynamics Of Macroinvertebrates In Tropical Island Headwater Streams, Keysa G. Rosas-Rodriguez

College of Graduate Studies: Theses & Dissertations

Variation in long-term temperature and precipitation patterns will likely influence the decomposition and export of benthic organic matter and influence aquatic macroinvertebrate consumer communities. Tropical systems are relatively understudied; therefore basal information is urgently needed. As part of an ongoing long-term study, we monitored macroinvertebrates in two shrimp-dominated and fishless headwater streams within the Luquillo Experimental Forest in Puerto Rico from 2009-2010. We combined growth rates with yearly biomass data to calculate secondary production and examined gut contents to develop quantitative food webs. Macroinvertebrate assemblages were dominated by a few insect taxa, with similar biotic composition across streams and habitats, …

Mediating Claims Through Critical Anthropomorphism, Gordon Burghardt

Animal Sentience

Key’s (2016) discussion of his claim that fish do not feel pain ignores the history of attempts to study the attribution of mental states to other species. Although willing to accept that mammals feel pain, Key claims that fish lack the mammalian neural mechanisms underlying pain and are unconscious of their experiences. Consequently, we do not need to be overly concerned about fishing practices that would otherwise be viewed as painful. Key uses a flawed anthropomorphic lens. All attributions of mental events to organisms other than oneself involve inferences derived from anthropomorphic processes through which we process physiological and behavioral …

Pain And Other Feelings In Humans And Animals, Antonio Damasio, Hanna Damasio

Animal Sentience

Evidence from neuroanatomy, neurophysiology, and neuropsychology suggests that the experience of feelings in humans does not depend exclusively on structures of the cerebral cortex. It does not seem warranted to deny the possibility of feeling in animals on the grounds that their cerebral cortices are not comparable to those of humans.

Falsifying The Null Hypothesis That “Fish Do Not Feel Pain", Brian Key

Animal Sentience

The reader of Animal Sentience may surmise that because the weight of the commentaries on my target article, “Why fish do not feel pain,” is leaning towards not supporting my argument, it follows that the premise "fish do not feel pain" is incorrect. However, science does not prevail by popular opinion. History is plagued with numerous (and often widely accepted) examples of biological phenomena being explained by mysterious forces. In the absence of a mechanistic understanding, the many different guises of vitalism (the principle that life involves a vital energy) are often invoked to explain the unknown. Spurious …

Successional Changes In Leaf Nutrient Concentrations Of Woody And Herbaceous Species, Daniel Walter Kuchta

Masters Theses

Leaf nutrient concentrations are an example of a functional trait, a trait that can be used to understand community dynamics by observing how plants interact with their environment. I explored how leaf nutrient concentrations were affected over successional time by environmental changes. The majority of prior research on functional traits focuses on either woody or herbaceous species, but not both life forms simultaneously. To address this, I also explored the successional changes to leaf nutrient concentrations, separating the plant community into woody and herbaceous species.

Healthy, mature leaves were taken from 122 taxa of woody and herbaceous species in a …

Low-Head Dams On Habitat, Fish Functional Guilds And Genetic Structuring In A Midwestern River System, Shannon Cassandra Frary Smith

Masters Theses

The natural flow regime of the majority of rivers in the United States has been altered by anthropogenic structures. This loss of connectivity plays a strong role in shaping river ecosystems by altering physical habitat characteristics and shaping fish community assemblages. Although the impacts of large dams on river systems are well documented and often easy to observe, there are fewer studies on the effects of smaller low-head dams. Additionally, the influences of low-head dams on the genetic structuring of small-bodied riverine fishes have yet to be fully explored. I assessed the effects of two low-head dams on the Vermilion …

Stopover Ecology Of Neotropical Migratory Songbirds In The Northern Yucatan Peninsula, Mexico, Lauren E. Solomon

Masters Theses

Chapter I. Full-service hotels, convenience stores or fire escapes? Evaluating function of stopover sites for Neotropical migrants in the northern Yucatan Peninsula

Nearctic-Neotropical migratory songbirds incur the highest mortality rates during their annual migrations. Migratory songbirds use a network of stopover sites to rest, refuel, or seek refuge during times of poor weather conditions; and the time and energy expended at these sites exceeds that of migratory flight. In order to conserve stopover sites with the highest value to Neotropical migrants, a conceptual framework was developed to classify stop over sites into three functional categories based on their function for …

Predicting Suitable Habitat Decline Of Midwestern United States Amphibians And Quantifying The Consequence Of Declines Using Pond-Breeding Salamanders, Brock Struecker

Master's Theses

With current declines of vertebrate taxa meeting or exceeding those of historic mass extinction events, there is a growing need to investigate the main drivers of declines. Amphibians are perhaps at greatest risk of global climate change and land-use changes than most other vertebrate classes and also have significant roles in ecosystem processes – combined, this creates a cause for concern. I designed a study that would investigate the effects of current and predicted climate change and land-use changes on amphibians using species distribution models and a field study to identify the potential consequences of amphibian species declines by investigating …

Ship-Induced Depression Wakes And Shoreline Erosion, Luca Zaggia, Giuliano Lorenzetti, Georgia Manfe, Gian Marco Scarpaf, K. E. Parnell, John Rapaglia, E. Molinaroli

Biology Faculty Publications

Shoreline retreat as an effect of ship wakes was studied in a navigation channel of the industrial port of Venice, Italy: the Malamocco -Marghera Channel. The investigation revealed unprecedented erosion rates, up to 4 m y , that determined a total loss of about 1.2 million of m of soil in the period 1970 -2015. This interaction between navigation and the channel margins must be considered in order to understand the past evolution of the central Venice Lagoon and for a sustainable management of the port traffic in the future sea -level rise scenario.

Pain In Parallel, Peter Godfrey-Smith

Animal Sentience

Key's (2016) arguments against the view that fish feel pain can be shown to be fallacious by considering some damage-related behaviors in invertebrates. Pain may have different neural bases in different organisms, so the absence in fish of the cortical structures that might underlie pain in mammals does not settle the question of fish pain.

Nonverbal Indicators Of Pain, Simon Van Rysewyk

Animal Sentience

In discussing fish pain, Key (2016) privileges pain in humans — “the only species able to directly report on its feelings.” Human experience of pain is not necessarily best reflected by verbal self-report, however. Neural responses to noxious stimuli are influenced by individual differences and by context. Nonverbal pain displays such as facial expressions reflect part of the neural response to noxious stimuli. Most mammals have a specific facial grimace reflecting pain. If fish have a somatic expression of pain, the development of a reliable and accurate somatic pain scale specific to fish could make a contribution to the debate …

Effects Of Stream Degradation On Ecosystem Function Are Mediated By Local Microbial And Macroinvertebrate Leaf Litter Processing, Carla Rothenbuecher

Murray State Theses and Dissertations

Riparian areas are fundamental to aquatic ecosystems by regulating temperature and light regimes, and providing allochthonous subsidies critical to the survival of aquatic and terrestrial species. On a global scale, increased rates of anthropogenic disturbance from agricultural activities and urbanization have caused the degradation of aquatic habitats. As a result, billions of dollars have been spent on stream restoration projects to protect aquatic resources; however, fundamental ecosystem processes like litter decomposition are rarely addressed. We conducted a litterbag experiment in a degraded high desert stream proposed for large-scale restoration to test the effects of reach location, canopy cover, and temperature …

Why Human Pain Can’T Tell Us Whether Fish Feel Pain, Victoria A. Braithwaite, Paula Droege

Animal Sentience

In his target article, Key (2016) reviews the neuroanatomy of human pain and uses what is known about human pain to argue that fish cannot experience pain. We provide three reasons why the conclusions reached by Key are unsupported. They consider (i) why it is not sufficient to conclude that only human neural structures can process conscious pain, (ii) why an understanding of pain in humans and non-human animals needs to be based within a framework of consciousness, and (iii) evidence already exists that fish treated with noxious stimuli lose the ability to perform normal behaviours: This was a behavioral …

An Invertebrate Perspective On Pain, Jennifer A. Mather

Animal Sentience

Although Key (2016) argues that mammals feel pain and fish do not, from an invertebrate perspective, it is obvious that the pain experience is shared by animals from a number of different animal groups.