Terrestrial and Aquatic Ecology Commons^™

Use Of A Net Rate Of Energy Intake Model To Examine Differences In Juvenile Steelhead (Oncorhynchus Mykiss) Densities And The Energetic Implications Of Restoration, C. Eric Wall

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Bonneville Power Administration (BPA) Fish and Wildlife Program mitigates for impacts of hydroelectric dams on ESA-listed salmon and steelhead populations in the Columbia River Basin (CRB). Considering the sizable investments in mitigation and the diversity of stream habitats within the CRB, there has been a pointed effort to develop and identify meaningful metrics relating to fish populations and trends in their habitat across the CRB. The Integrated Status and Effectiveness Monitoring Program (ISEMP) was developed in 2003 specifically for this purpose, and is tasked with developing and testing strategies for determining the status and trend of salmonid populations and …

Trophic Status, Energetic Demands, And Factors Affecting Lahontan Cutthroat Trout Distribution In Pyramid Lake, Nevada, Nicholas A. Heredia

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The progression of human development across the landscape has caused declines to both terrestrial and aquatic fauna. Many fishes, specifically native salmonids, have seen reductions in both population size and geographic distribution resulting from reduced habitat, overharvest, and the introduction of non-native predators and competitors. A native North American fish particularly hard hit by these types of actions, Lahontan cutthroat trout, are now limited to less than 10% of their historical habitat, and currently occupy only half of the lakes that they once occupied.

In Pyramid Lake, Nevada, where Lahontan cutthroat trout were once locally extinct, due to overfishing, water …

Modeling And Monitoring Terrestrial Primary Production In A Changing Global Environment: Toward A Multiscale Synthesis Of Observation And Simulation, Shufen Pan, Hanqin Tian, Shree R. S. Dangal, Zhiyun Ouyang, Bo Tao, Wei Ren, Chaoqun Lu, Steven W. Running

Ecosystem and Conservation Sciences Faculty Publications

There is a critical need to monitor and predict terrestrial primary production, the key indicator of ecosystem functioning, in a changing global environment. Here we provide a brief review of three major approaches to monitoring and predicting terrestrial primary production: (1) ground-based field measurements, (2) satellite-based observations, and (3) process-based ecosystem modelling. Much uncertainty exists in the multi-approach estimations of terrestrial gross primary production (GPP) and net primary production (NPP). To improve the capacity of model simulation and prediction, it is essential to evaluate ecosystem models against ground and satellite-based measurements and observations. As a case, we have shown the …

Body Size And Species Richness Changes In Glyptosaurinae (Squamata: Anguidae) Through Climatic Transitions Of The North American Cenozoic, Sara Elshafie

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Poikilothermic vertebrates offer excellent climate proxies based on relationships between environment and measurable variables such as body size and species richness. Relationships of these variables in lizards to environmental transitions over long time scales are poorly understood. Here I show that patterns of body size and species richness in a lizard clade, Glyptosaurinae (Squamata: Anguidae), correspond to known histories of paleotemperatures through the Cenozoic of North America. Glyptosaurines have the richest fossil record among North American Cenozoic lizards and exhibit a wide range of skull sizes. In order to estimate body size for glyptosaurines and other fossil anguids, I collected …

Seasonal Variability As A Source Of Uncertainty In The West Siberian Regional Ch4 Flux Upscaling, A. F. Sabrekov, Benjamin R. K. Runkle, M. V. Glagolev, I E. Kleptsova, S. S. Maksyutov

Biological and Agricultural Engineering Faculty Publications and Presentations

This study compares seasonal and spatial variations in methane fluxes as sources of uncertainty in regional CH4 flux upscaling from the wetlands of West Siberia. The study examined variability in summertime CH4 emissions from boreal peatlands, with a focus on two subtaiga fen sites in the southern part of West Siberia (Novosibirskaya oblast). We measured CH4 flux, water table depth, air and peat temperature, pH and electric conductivity of peat water during three field campaigns in summer 2011 (9–12 July, 26–28 July and 20–21 August). Fluxes were measured with static chambers at sites chosen to represent two of the most …

Fifth Specimen Of The Nine-Banded Armadillo (Dasypus Novemcinctus) From Nebraska, Keith Geluso, Greg D. Wright, Angelina E. Wright

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The nine-banded armadillo (Dasypus novemcinctus) has moved northward in the Great Plains in the last century, reaching distributional limits in Nebraska for pioneering individuals. Herein, we report on the fifth specimen from Nebraska. A male individual was obtained from Lincoln County representing a new county record for Nebraska and one of the northwestern-most specimens in the United States.

Developing Transmissible Vaccines For Animal Infections: Intrinsically Safe Designs And A Staged Transparent Development Process Will Be Essential, Daniel G. Streiker, Megan E. Griffiths, Rustom Antia, Laura Bergner, Peter Bowman, Maria Vitoria Dos Santos De Moraes, Kevin Esvelt, Mike Famulare, Amy T. Gilbert, Biao He, Michael A. Jarvis, David A. Kennedy, Jennifer Kuzma, Carolyne Nasi,Iyu Wanyonyi, Christopher Remien, Tonie Rocke, Kyle Rosenke, Courtney Schreiner, Justin Sheen, David Simons, Ivet A. Yordanova, James J. Bull, Scott L. Nuismer

United States Department of Agriculture Wildlife Services: Staff Publications

Developing Transmissible Vaccines for Animal Infections: Intrinsically Safe Designs and a Staged Transparent Development Process Will Be Essential

Intrinsically safe, biologically compelling vaccine designs

Pahsed development must incorporate checkpoints and engagement

Staged development with established checkpoints

Wquitable partnerships with international governance

Toward deployment

Workshop organization

Seven proposed commitm ents for the responsible development of transmissible vaccines for infectious disease control in animals

Evolutionary outcomes of vaccine transmission depend on the viral vector and the genetic modifications introduced

The Surface Energy Balance And Its Drivers In A Boreal Peatland Fen Of Northwestern Russia, Benjamin R. K. Runkle, Christian Wille, Michal Gazovic, M. Wilmking, L. Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

Boreal peatland energy balances using the eddy covariance technique have previously been made in Alaska, Canada, Scandinavia, and Western Siberia, but not in the European portion of the Russian Federation. European Russia contains approximately 200,000 km2 of peatlands and has a boreal (subarctic), continental climate influencing the region’s energy balance. To help fill this research gap, the surface energy balance was determined for a boreal peatland fen in the Komi Republic of Russia for an 11-month period in 2008–2009 using the eddy covariance method. The total measurement period’s cumulative energy balance closure rate was 86%, with higher closure during the …

Ecological Processes Dominate The 13C Land Disequilibrium In A Rocky Mountain Subalpine Forest, D. R. Bowling, Ashley P. Ballantyne, J. B. Miller, S. P. Burns, T. J. Conway, O. Menzer, B. B. Stephens, B. H. Vaughn

Ecosystem and Conservation Sciences Faculty Publications

Fossil fuel combustion has increased atmospheric CO₂ by ≈ 115 µmol mol⁻¹ since 1750 and decreased its carbon isotope composition (δ¹³C) by 1.7–2‰ (the ¹³C Suess effect). Because carbon is stored in the terrestrial biosphere for decades and longer, the δ¹³C of CO₂released by terrestrial ecosystems is expected to differ from the δ¹³C of CO₂ assimilated by land plants during photosynthesis. This isotopic difference between land-atmosphere respiration (δ_R) and photosynthetic assimilation (δ_A) fluxes gives rise to the ¹³C land disequilibrium …

Oreaster Reticulatus: A Study Of 3 Aggregations In The Bocas Del Toro Archipelago, Rae Robinson

Independent Study Project (ISP) Collection

Las estrellas del mar son importantes para mantener un ecosistema estable y la cadena alimentaria de una sistema del mar. La especie de estrella del mar, Oreaster reticulatus, es un despredador de material particulada, algas, larvas pequeñas, y a veces tejido esponja. En el archipiélago de Bocas del Toro esta especie brillante es frecuente. Se ha sugerido que la competencia de alimentos entre individuos de las misma especie es un fenómeno que limitaría las recursos y por lo tanto las capacidades de crecimiento. Fue presumido que habría una relación inversa entre la densidad de población y tamaño de media …

Tracking Movements Of Ambystoma Tigrinum Using Radio Telemetry, Heather L. Waye, Kirsten T. Sharpe

Undergraduate Research Symposium 2014

The eastern tiger salamander (Ambystoma tigrinum) is a widely distributed amphibian ranging from Northern Minnesota, down to Florida, and over to the east coast of the United States (Oldfield and Moriarty, 1994). As populations within the species are diverse and seldom studies have been done in the area of radio telemetry in tiger salamanders, there is a need for information in this field. This project was the first of its kind to be implemented in Minnesota.

In an effort to more fully understand the ecology of this species, this research attempts to provide vital information that will allow a better …

Issue Brief: Asset Management For Stormwater, New England Environmental Finance Center, Sustainable Communities Learning Network

Sustainable Communities Capacity Building

Asset management is a strategic approach to maintaining and sustaining infrastructure in order to meet the needs of the community at the lowest overall life cycle cost. This approach helps communities know how and where to prioritize limited funds in order to achieve the greatest benefit. Often applied to drinking water and wastewater infrastructure, this method is well suited to managing any assets, including stormwater systems.

This issue brief is intended to introduce local governments to the asset management process and to show how it can be applied in managing stormwater assets. It was adapted from an appendix written by …

Microglia Respond To Both Permanent And Temporary Deaferentation In The Adult Zebrafish Olfactory Bulb, Amanda K. Mckenna

Masters Theses

The major goal of this study was to investigate a microglial response following deafferentation in the adult zebrafish, Danio rerio, olfactory bulb. Microglia were identified in the olfactory bulb using the 4c4 antibody and phagocytic-dependent labeling (DiA). Microglia responded to both methods of deafferentation namely, permanent (cautery) and temporary (Triton X- 100). On one and three days following both permanent and temporary deafferentation there was a significant increase in microglia in the treated olfactory bulb. At five and seven days after permanent and temporary deafferentation there was no longer a significant difference between the treated and untreated olfactory bulbs, …

Current Status And Long-Term Trends In Water Quality And Living Resources In The Virginia Tributaries And Chesapeake Bay Mainstem From 1985 Through 2012, Daniel M. Dauer, Todd A. Egerton, John R. Donat, Michael F. Lane, Suzanne C. Doughten, Cindy Johnson

Status and Trends for Virginia Chesapeake Bay

The period prior to the implementation of the Chesapeake Bay Monitoring Program was characterized by a marked decline in the water quality of the Chesapeake Bay. The disappearance of submerged aquatic vegetation in certain regions of the Bay, declines in the abundance of some commercially and recreationally important species, increases in the incidence of low dissolved oxygen events, changes in the Bay's food web, and other ecological problems have been related to the deteriorating water quality (e.g. USEPA, 1982,1983;Officer et al.,1984; Orth and Moore, 1984). The results of concentrated research efforts in the late 1970s and early 1980s stimulated the …

A Case Study Of Rhincodon Typus Scarring In Ningaloo Reef: An Assessment Of The Current Scarring Classification System, Laura Korman

Independent Study Project (ISP) Collection

Rhincodon typus are the largest fish in the sea, but little is understood about this elusive species. They are known to annually aggregate in Ningaloo Reef, Western Australia—the location of this study. In order to better understand this species, scarring was observed on a subset of the population that aggregates in Ningaloo Reef. In addition, the scarring classification system was examined to determine if it is the most effective classification system. R. typus were observed, and photographed from April 9th-April 25th, 2014. These photos were then used for identification and scarring classification purposes. The analysis of the scars on R. …

Determination Of The Ecological Condition Of Benthic Communities Affected By Polycyclic Aromatic Hydrocarbons In The Elizabeth River, Chesapeake Bay, Usa, Adam M. Webb

Biological Sciences Theses & Dissertations

The Southern Branch of the Elizabeth River, a tributary of Chesapeake Bay, has historically been polluted with hydrocarbon based industrial by-products. My study compared benthic community condition from two locations in the Southern Branch: the subtidal region near Money Point, historically affected by pollution of polycyclic aromatic hydrocarbons (PAHs), to a subtidal region near Blows Creek on the opposite shore that is putatively designated as unimpacted by P AH contamination. Samples from both study sites in the Southern Branch were compared to the benthic community condition of samples from the same habitat type designations collected as part of the Chesapeake …

Hymenolepis Robertrauschi N. Sp. From Grasshopper Mice Onychomys Spp. In New Mexico And Nebraska, U.S.A., Scott Lyell Gardner, Brent A. Luedders, Donald W. Duszynski

Harold W. Manter Laboratory of Parasitology: Faculty Publications

From 1989 through 1998, a total of 358 grasshopper mice were collected and examined for helminth and protistan parasites from several habitat types on the Sevilleta Long Term Ecological Research (LTER) site in New Mexico, U.S.A. Of these, 205 individuals were identified as Onychomys leucogaster (Wied-Neuwied 1841) and 153 individuals were classified as O. arenicola Mearns 1896. Many individuals of Onychomys were infected with a new species of Hymenolepididae (Hymenolepis robertrauschi), which is herein described, illustrated, and compared with all species of Nearctic Hymenolepis s. str. Hymenolepis robertrauschi was found in 26% of the individuals of O. arenicola …

State Of The U.S. Ocean And Coastal Economies 2014, Judith T. Kildow, Charles S. Colgan, Jason D. Scorse, Pat Johnston, Matt Nichols

Publications

The nation's coasts and oceans contribute much to the United States economy. For the past 14 years, the National Ocean Economics Program (NOEP), now a program of the Center for the Blue Economy at the Monterey Institute of International Studies, has compiled time-series data that track economic activities, demographics, ports and cargo volume and value, natural resource production and value, non-market values, and federal expenditures in the U.S. coastal zone both on land and in the water. A report on the ocean and coastal economies of the United States was released by NOEP in 2009 covering data through 2005. The …

Evolutionary Relationships Of The Critically Endangered Frog Ericabatrachus Baleensis Largen, 1991 With Notes On Incorporating Previously Unsampled Taxa Into Large-Scale Phylogenetic Analyses, Karen Siu-Ting, David J. Gower, Davide Pisani, Roman Kassahun, Fikirte Gebresenbet, Michele Menegon, Abebe A. Mengistu, Samy A. Saber, Rafael O. De Sá, Mark Wilkinson, Simon P. Loader

Biology Faculty Publications

Background: The phylogenetic relationships of many taxa remain poorly known because of a lack of appropriate data and/or analyses. Despite substantial recent advances, amphibian phylogeny remains poorly resolved in many instances. The phylogenetic relationships of the Ethiopian endemic monotypic genus Ericabatrachus has been addressed thus far only with phenotypic data and remains contentious.

Results: We obtained fresh samples of the now rare and Critically Endangered Ericabatrachus baleensis and generated DNA sequences for two mitochondrial and four nuclear genes. Analyses of these new data using de novo and constrained-tree phylogenetic reconstructions strongly support a close relationship between Ericabatrachus and …

Comparison Of Gross Primary Productivity Derived From Gimms Ndvi3g, Gimms, And Modis In Southeast Asia, Junbang Wang, Jingwei Dong, Jiyuan Liu, Mei Huang, Guicai Li, Steven W. Running, William Kolby Smith, Warwick Harris, Nobuko Saigusa, Hiroaki Kondo, Yunfen Liu, Takashi Hirano, Xiangming Xiao

Ecosystem and Conservation Sciences Faculty Publications

Gross primary production (GPP) plays an important role in the net ecosystem exchange of CO2 between the atmosphere and terrestrial ecosystems. It is particularly important to monitor GPP in Southeast Asia because of increasing rates of tropical forest degradation and deforestation in the region in recent decades. The newly available, improved, third generation Normalized Difference Vegetation Index (NDVI3g) from the Global Inventory Modelling and Mapping Studies (GIMMS) group provides a long temporal dataset, from July 1981 to December 2011, for terrestrial carbon cycle and climate response research. However, GIMMS NDVI3g-based GPP estimates are not yet available. We applied the GLOPEM-CEVSA …

Utilization Of The Invasive Alga Gracilaria Vermiculophylla (Ohmi) Papenfuss By The Native Mud Snail Ilyanassa Obsoleta (Say), Michele Guidone, Christine Newton, Carol S. Thornber

Biology Faculty Publications

The recent invasions of the red alga, Gracilaria vermiculophylla, to the Atlantic and Eastern Pacific Oceans have the potential to significantly alter intertidal and subtidal soft sediment communities. In particular, G. vermiculophylla increases habitat complexity and provides a novel hard substrate in an otherwise two dimensional habitat. Following our observations that the native omnivorous mud snail Ilyanassa obsoleta utilizes G. vermiculophylla for egg capsule deposition, our field surveys demonstrated that the in situ abundance of egg capsules on G. vermiculophylla matched abundances on a native alga Ceramium virgatumandwere at least 11–50 times greater than on all other co-occurring macrophytes. Additionally, …

From The Inside Out, And Through., Dominique Ovalle

The Transdisciplinary STEAM+ Journal

These photographs describe “Science” born of consumerism, hijacked by me, economically disenfranchised, or rather—temporarily embarrassed, artist. I was putzing around Malibu—my old college stomping ground, looking for free food; maybe a sample of some gourmet $5 chocolate, and all I got were these photographs.

Archaeological Data Provide Alternative Hypotheses On Pacific Herring (Clupea Pallasii) Distribution, Abundance, And Variability, Iain Mckechnie, Dana Lepofsky, Madonna L. Moss, Virginia L. Butler, Trevor J. Orchard, Gary Coupland, Frederick Foster, Megan Caldwell, Ken Lertzman

Anthropology Faculty Publications and Presentations

Over the last century, Pacific herring, a forage fish of tremendous cultural, economic, and ecological importance, has declined in abundance over much of its range. We synthesize archaeological fisheries data spanning the past 10,000 y from Puget Sound in Washington to southeast Alaska to extend the ecological baseline for herring and contextualize the dynamics of modern industrial fisheries. While modern herring populations can be erratic and exhibit catastrophic declines, the archaeological record indicates a pattern of consistent abundance, providing an example of long-term sustainability and resilience in a fishery known for its modern variability. The most parsimonious explanation for the …

Invasive Plant Erodes Local Song Diversity In A Migratory Passerine, Yvette K. Ortega, Aubree Benson, Erick Greene

Biological Sciences Faculty Publications

Exotic plant invasions threaten ecosystems globally, but we still know little about the specific consequences for animals. Invasive plants can alter the quality of breeding habitat for songbirds, thereby impacting important demographic traits such as dispersal, philopatry, and age structure. These demographic effects may in turn alter song-learning conditions to affect song structure and diversity. We studied Chipping Sparrows (Spizella passerina) breeding in six savannas that were either dominated by native vegetation or invaded by spotted knapweed (Centaurea stoebe), an exotic forb known to diminish food resources and reproductive success. Here, we report that the prevalence of older birds was …

Changes To Snowpack Energy State From Spring Storm Events, Columbia River Headwaters, Montana, Zachary M. Seligman, Joel T. Harper, Marco P. Maneta

Geosciences Faculty Publications

The generation and release of meltwater during the spring snowmelt season can be delayed because of spring storm episodes with snow accumulation and/or sustained subfreezing temperatures. The delayed release of snowmelt often extends beyond the particular storm event because of changes to the internal state of energy in the snowpack that prevents transmission of meltwater. Following a storm, two energy deficits internal to the snowpack must be overcome before surface melt can drain and exit the snowpack: 1) cold content created by heat lost during the episode must be removed and 2) dry pore space must be filled with liquid …

The Ecological Effects Of Cattle Grazing On Reptiles And Small Mammals In A San Joaquin Valley Grassland, Michael William Tom

Master's Theses

Livestock grazing is a common and extensive land use practice in the United States occurring in a wide range of habitat types. As such, livestock grazing has the potential to alter ecosystem structure, function and community composition. The primary component (Chapter 1) of this thesis examined the effects of cattle grazing in a San Joaquin Valley grassland on two target taxa: reptiles and small mammals. The study took place on the Chimineas Unit of the Carrizo Ecological Reserve, San Luis Obispo County, California during Fall 2009 and Spring 2010. These taxa were sampled on matched pairs of two grazed and …

Historical Vegetation Of The Tiller Area, Douglas County, Oregon Based On Glo Survey Notes, O. Eugene Hickman, John Christy

Institute for Natural Resources Publications

This project was conducted in the Tiller area east of Canyonville, to develop a landscape perspective of historical vegetation for the early settlement era. The project area covered about 128,214 acres, of which 42% was private land, 17% BLM, and 41% USFS. This area of complex topography, transitional between interior valleys of the Umpqua River and the Cascade Range, has a small rural population base sometimes impacted by local natural resource problems and management. The study area includes portions of the South Douglas County Wildland-Urban Interface zone.

Historical land survey notes from General Land Office (GLO) were used to create …

Warming, Soil Moisture, And Loss Of Snow Increase Bromus Tectorum’S Population Growth Rate, Aldo Compagnoni, Peter B. Adler

Green Canyon Environmental Research Area, Logan Utah

Climate change threatens to exacerbate the impacts of invasive species. In temperate ecosystems, direct effects of warming may be compounded by dramatic reductions in winter snow cover. Cheatgrass (Bromus tectorum) is arguably the most destructive biological invader in basins of the North American Intermountain West, and warming could increase its performance through direct effects on demographic rates or through indirect effects mediated by loss of snow. We conducted a two-year experimental manipulation of temperature and snow pack to test whether 1) warming increases cheatgrass population growth rate and 2) reduced snow cover contributes to cheatgrass’ positive response to …

The Longhorn Beetles (Coleoptera: Cerambycidae) Of Nebraska, Usa: New State Records, A Checklist Of Known Species, And Distribution Maps, Stephen M. Spomer

University of Nebraska State Museum: Entomology Papers

One hundred eighty-three species/subspecies of longhorn beetles are recorded from Nebraska, an increase of 19 species since 1971. The greatest number of recent discoveries have come from sites along the Missouri River, especially Indian Cave State Park in southeastern Nebraska, as well as the Pine Ridge at Chadron, Nebraska.

Patch Burn‐Grazing: An Annotated Bibliography, Rajeeva Voleti, Stephen L. Winter, Sherry Leis

School of Natural Resources: Faculty Publications

Patch burn‐grazing is a rangeland management strategy that exploits the attraction of grazing animals to recently burned areas in order to achieve management objectives. When fire is applied to a landscape in a patchy manner, leaving some patches unburned, the resulting grazing animal activity, forage utilization, and animal impact are patchily distributed within that landscape as well. Areas that have been recently burned tend to be characterized by the highest levels of grazing animal activity while areas that have gone the longest without burning tend to be characterized by the lowest levels of grazing animal activity. This can be advantageous …