Terrestrial and Aquatic Ecology Commons^™

Avian Species And Family Composition Along Elevational And Disturbance Gradients In Santa Fe National Park, Veraguas Province, Panamá, Benjamin Shipley

Independent Study Project (ISP) Collection

Elevational gradients are some of the most well-known and researched biological trends. However, how species diversity varies with elevation differs by taxa and location. One hypothesis suggests that bird diversity decreases with increasing elevation in the tropics. In addition, bird diversity may decrease along the forest edge and in areas of increasing disturbance. Therefore, in this study I surveyed avian diversity along an elevational gradient in Santa Fe National Park, Veraguas, Panamá using point-count observations. Thirty-six point-count locations in 3 elevation zones were surveyed between 19 Apr and 29 Apr 2017. Shannon diversity, richness, and evenness were calculated for both …

Fish Community Assessment Of The Bonyic And Teribe Rivers Within The Naso-Teribe Territory Bocas Del Toro, Panama: Possible Implications Of Bonyic Dam., Shaylyn Austin

Independent Study Project (ISP) Collection

In the Changuinola/Teribe watershed of Bocas Del Toro, Panama, changes to the fluvial system due to the recently constructed Bonyic Dam have implications connected to the biodiversity of a UNESCO Biosphere Reserve and the livelihoods of thousands of people of the Naso-Teribe indigenous group. This study investigated the composition of fish communities in 6 study sites in 3 different areas in relation to the Bonyic Dam. A total of 318 individual fish were captured, representing 5 families and 10 species, using the cast net sampling method. The biodiversity was analyzed using Simpson’s Diversity Index, Evenness Index, species richness, and species …

Monitoring Anuran Populations In Bosque Protector Candelaria: A Multi-Year Comparison Of Frog Populations In An Ecuadorian Cloud Forest, Mindee Goodrum

Independent Study Project (ISP) Collection

For many years, amphibian populations around the world have been declining due to climate change, habitat loss or change, and diseases such as Ranavirus or the Chytrid fungus. However, there is still a great lack of information regarding the diversity of frogs, especially in the cloud forests of Ecuador where this study was conducted. This study was conducted in April and May of 2017 in the Ecominga Reserve of Cerro Candelaria in El Placer, Ecuador. The objective was to conduct visual-encounter surveys of several sites in the reserve and compare the results to studies that have been conducted in the …

Coral Bleaching And The Effect Of Disturbances On The Damselfish Community On Lizard Island, Australia, Alejandra Munoz

Independent Study Project (ISP) Collection

Coral reefs are characterized by their dynamic ecological processes that supports a high diversity through the recruitment of marine species and temporal disturbances that can have positive effects on the system. In the face of global climate change however, coral reefs face intense coral bleaching and increased degradation as they may begin to have less time to recover between bleaching events in the near future. Little is known on the long term effects of coral bleaching and habitat degradation on reef fish communities and much less is known about the mechanisms that bring about changes to reef fish assemblages.

This …

The Effects Of Thermal Stress On Fluorescent Protein Expression In An Indo-Pacific Scleractinian Coral Species, Acropora Tenuis, Anna Knochel

Independent Study Project (ISP) Collection

The scleractinian coral species that so heavily define tropical coral reefs are increasingly threatened by anthropogenic global warming. Rising sea surface temperatures in combination with light stress causes the photosynthetic breakdown of the coral’s algal symbiont, Symbiodinium. Corals have developed a number of physiological responses to handle acute stressors, such as the production of ultraviolet-protecting amino acids, heat shock proteins, the ability to shift symbionts, and the production of fluorescent proteins. The latter has been thought to play a photoprotective role in the coral holobiont, and studies have shown evidence that corals orient these pigments to divert harmful light away …

Beyond What Is Heard: A Documentary Film About Acoustic Ecology As Sustainability Activism, Jesse Rolfe

Independent Study Project (ISP) Collection

Acoustic ecology is an interdisciplinary field that studies the relationship between sounds, sound sources, and environment they exist within. From an environmental perspective, this involves a holistic consideration of ecosystems, and how the various organisms within that ecosystem, including humans, impact and interact with each other through sound. Biosphere Soundscapes, an international, interdisciplinary project directed by Australian acoustic ecologist Dr. Leah Barclay, operates to engage communities within UNESCO Biosphere Reserves through acoustic-ecological concepts, monitoring, and techniques. In November 2016, I undertook the process of creating a short documentary film entitled Beyond What is Heard, which aimed to explore how the …

Fish Diversity And Coral Health Of Tanzania's Reefs: A Comparative Study Between The Ushongo Village Reef And The Fungu Zinga Reef Over Time, Della Turque, Corinne Casper

Independent Study Project (ISP) Collection

The world’s oceans are becoming increasing acidic due to global climate change, posing a threat to marine ecosystems, including coral carbonate systems. Environmental threats are exacerbated by human development stressors as well: growing populations, dependency on marine resources, and unsustainable practices invaluable marine ecosystems at risk. Tanzania’s coral reef system extends for 3580 km2 (Muhando et al. 2008) near the Tanga region, serving over half a million people who are highly dependent on fishing and other marine resources as their livelihoods (Samoilys et. al. 2008). With Tanzania’s population rapidly growing, the unsustainable pressure on coral reefs for sustenance and livelihood …

Live And Dead Coral Cover On Three Reefs And Public Perceptions Of Degradation Around Almirante Bay, Bocas Del Toro, Phoebe Thompson

Independent Study Project (ISP) Collection

Almirante Bay is a lagoonal body of water off the western Caribbean coast of Panama. The islands within the bay are popular tourist destinations, drawing visitors from around the world to explore beaches and coral reefs. However, the reefs in Almirante Bay are continually exposed to both natural and anthropogenic stressors, such as temperature inversions, boat pollution, sedimentation from dredging, and chemical runoff from coastal banana plantations. Because the economy of the area is heavily dependent on tourism, this creates an interesting dynamic in that the main source of income (tourism) could be detrimental to a main attraction of the …

Reef Fish And Coral Assemblages On Hospital Point And Near Bastimentos Island, Panama, Elaine Shen

Independent Study Project (ISP) Collection

Because worldwide declines coral reef health are of major concern, studying coral reefs through the lens of conservation efforts at local scales is essential for determining and monitoring effective policy measures. In the Bocas del Toro Archipelago, there are conflicts of interest between exploitative rapid tourism development, overfishing practices, and national efforts to conserve the local marine biodiversity. Coral and reef fish species abundance richness, diversity, evenness, and similarity were measured to see how coral and reef fish assemblages changed between protected and unprotected areas. A total of 329 fish and 322.5 square meters of benthos were analyzed using underwater …

A Study Of Defensive Mechanisms Employed By Two Species Of Nudibranchs Using Toxicity And Unpalatability Analyses, Sean Youn

Independent Study Project (ISP) Collection

Nudibranchs are marine invertebrates that have developed an intriguing defense mechanism, including warning coloration and the use of chemicals accumulated through their sponge diet. The goal of this study was to determine whether the strength of chemical defenses differs between dietary and accumulated secondary metabolites for two species: Glossodoris vespa and Ceratosoma brevicaudatum. First, NMR spectroscopy was used to not only identify specific compounds in the mantle (outer covering) and the viscera (gut) but also to analyze the possibility of nudibranch species transporting more toxic compounds for defensive purposes. Next, toxicity (brine shrimp) and palatability (Palaemon shrimp) assays …

The Effects Of Sub-Lethal Predation On The Reproductive Output Of Acanthaster Planci (Crown-Of-Thorns Starfish), Emily Mucha

Independent Study Project (ISP) Collection

Wide-scale declines in live coral cover have been observed throughout history. Modern day coral populations face a multitude of environmental disturbances, however one of the most devastating to the reefs in the Indo-Pacific is the crown-of-thorns starfish (Acanthaster planci), which feeds on the tissues of live corals. The rate at which these individuals feed combined with the explosion of populations in times of outbreak have been seen to exert some of the biggest pressures on coral reefs to date. Following recent episodes of crown-of-thorns starfish (COTS) outbreaks, research on the organism has become increasingly prevalent on the scientific …

The Effects Of Sub-Lethal Predation On The Reproductive Output Of Acanthaster Planci (Crown-Of-Thorns Starfish), Emily Mucha

Independent Study Project (ISP) Collection

Wide-scale declines in live coral cover have been observed throughout history. Modern day coral populations face a multitude of environmental disturbances, however one of the most devastating to the reefs in the Indo-Pacific is the crown-of-thorns starfish (Acanthaster planci), which feeds on the tissues of live corals. The rate at which these individuals feed combined with the explosion of populations in times of outbreak have been seen to exert some of the biggest pressures on coral reefs to date. Following recent episodes of crown-of-thorns starfish (COTS) outbreaks, research on the organism has become increasingly prevalent on the scientific …

Benthic Algae And Diatom Communities In Seagrass Meadows Under Three Different Human Impact Regimes In Bocas Del Toro, Panamá, Averyl Cheng

Independent Study Project (ISP) Collection

In Bocas del Toro, Panamá, widespread tourism has been the main source of revenue and has become an increasing threat to seagrass meadows and the organisms they support. This study aimed to investigate and describe algae and diatom communities under three different regimes of anthropogenic disturbance: high, medium and low human impact. The biodiversity was analyzed by measuring the algae and diatom assemblages with Shannon-Weiner’s Biodiversity Index, Evenness Index and Sorensen’s coefficient. The data obtained from these three diversity indices were compared to the areas along an anthropogenic disturbance gradient of high, medium and low impact. A total of 12 …

Nesting Trends Of The Green (Chelonia Mydas) And Hawksbill (Eretmochelys Imbricata) Turtles On Misali Island, Pemba, Thaowan Giorno, Megan Herrmann

Independent Study Project (ISP) Collection

Misali Island, one of the first conservation areas in Zanzibar, is considered an important nesting ground for the Green and Hawksbill turtles. This study was conducted to present results on the nesting and hatching trends on Misali Island by using data collected since 2002. Thorough statistical analyses were used on these data in order to find patterns in the nesting trends of these two species, and identify any significant differences that have occurred over the years. Overall, there has been a steady decline in the number of nesting and hatching events, but no statistically significant trends were found in terms …

Nutrient Cycling In The Amazon: A Comparison Of Soil Characteristics, Insects, Root Types And Decomposition Rates Between Varzea And Terra Firme Habitats In The Ecuadorian Amazon, Mira Ensley-Field

Independent Study Project (ISP) Collection

Decomposition and nutrient cycling form the basis of every ecosystem. Nutrient availability in the soil affects plant species composition, richness, and productivity. The Amazon rainforest is known for its unusually fast nutrient cycle, but many aspects lack detailed study and analysis. This comparative study carried out in the Ecuadorian Amazon had four primary objectives related to understanding the nutrient cycle in the Amazon; 1.) analyze soil characteristics, 2.) assess insect diversity in the leaf litter layer, 3.) examine root characteristics, and 4.) measure the decomposition rate between Varzea and Terra Firme habitats alongside the Rio Napo. Forty 0.25 x 0.25m …

The Use Versus Availability Of Wood Extraction At The Baga Ii Forest Reserve Border Adjacent To Kizanda Village In The West Usambara Mountains, Tanzania, Rebecca Halter

Independent Study Project (ISP) Collection

Tropical forests, especially in developing countries, continue to face serious threats of deforestation due to human pressures and poor management. These forests are at risk of disappearing and taking their water catchment and ecosystem services with them. Kizanda Villagers’ illegal woodfuel and polewood extraction poses a threat to the future health and existence of the Baga II Forest. This study, conducted from April 5th to April 19th, 2016, aimed to examine the use versus availability of tree species along the forest border. Twenty disturbance transects, each 4 meters wide, were conducted perpendicular to the Baga II forest border. The transects …

Epigeal Fauna Of Bosque Protector Cerro Candelaria, Justine Albers

Independent Study Project (ISP) Collection

Pitfall traps are commonly used to sample epigeal fauna, and are especially utilized for the collection of ground-dwelling arthropods; however, this sampling method has yet to be employed in Cerro Candelaria, a protected cloud forest reserve in Tungurahua, Ecuador. Pitfall trap systems were established at two different sites in the reserve that differed in elevation and forest type. Although individuals from 4 different phlya, 11 classes and 17 orders were encountered over the duration of the study, pitfalls were most effective at sampling Coleoptera, which comprised 40% of the total catch across both sites. The two communities of beetle …

Seagrass Community Change At Three High Risk Ports In The Great Barrier Reef World Heritage Area From 2005 To 2014, Celeste Venolia

Independent Study Project (ISP) Collection

Seagrass meadows are extremely valuable and dynamic ecosystems currently facing pressure from anthropogenic disturbances. Seagrass ecosystems are declining globally because of direct and indirect threats that shift environmental conditions controlling seagrass distribution. Seagrass species responses to disturbances vary based on a number of factors including life history strategy. The goal of this study was to map and analyze patterns of dominant seagrass species change at Cairns and Gladstone from 2005-2014 and Townsville from 2007-2014. This compilation data set was symbolized according to the life history strategy of the species. The major disturbances during this time period were physical damage from …

Symbiont Type And Photophysiology Of Acropora Loripes And Platygyra Daedalea Under Future Scenarios Of Rising Ocean Temperatures And Pco2, Lauren Howe-Kerr

Independent Study Project (ISP) Collection

Coral cover is declining at an alarming rate, and it is estimated that 60% of reefs worldwide may be lost by 2030. Elevated seawater temperatures and ocean acidification are contributing to an increase in the frequency and severity of bleaching events. These events disrupt the symbiosis between corals and their photosynthetic dinoflagellates (Symbiodinium spp). Relatively little is known about the ability of corals to acclimatize to changing environmental conditions or whether the rate of climate change is too fast for corals to keep up, limiting the accuracy of future predictions for reef resilience. However, the ability of some coral species …

L’Insecte Sage In The Age Of Global Climate Crisis: A Biocultural And Ontological Study Of Vulnerability And Resilience In The Manakara Beekeeping Network, Tamar Law

Independent Study Project (ISP) Collection

The effects of climate change are felt unevenly throughout the globe. Impoverished populations with high levels of subsistence agriculture are particularly vulnerable due to their direct dependence on the land. However, these populations are also the possible agents of change and solutions, as their traditional ecological knowledge has evolved in relation to their context. The honeybee is directly implicated in climate change vulnerability due to its role in pollination services, by ensuring food security. In the past decade, honeybees have risen to international fame and scrutiny due to a global vanishing of bees, attributed in part to climate change and …

Bleaching, Disease, And Colonization: The Ecology Of Coral Health In Southeastern Nosy Be, Madagascar, Luella Allen-Waller

Independent Study Project (ISP) Collection

Coral reefs constitute irreplaceable networks of marine biodiversity as well as an important economic resource to many coastal communities in the tropics. Many factors threaten these fragile ecosystems worldwide: overfishing, pollution, ocean acidification, and increasing sea temperatures all interact to diminish reef-building coral health in a variety of ways. This study aims to characterize the taxonomic and spatial patterns of several acute negative health conditions affecting hard corals in and near Lokobe National Park, Nosy Be, Madagascar. Bleaching, coral disease, filamentous algal overgrowth, and soft coral colonization were surveyed at six fringing reef sites representing different ecological zones. While Acropora …

Marine Animalia Organism Diversity And Reef Condition On Two Reef Sites At Big Creek Beach And Boca Del Drago, Bocas Del Toro, Panamá, Bri Tiffany

Independent Study Project (ISP) Collection

Ocean acidification, climate change, overfishing, and coastal development are endangering coral reefs across the globe. In Bocas del Toro, Panamá, coral reefs are especially threatened by the rapid growth in tourism and the subsequent anthropogenic effects caused by an increased human presence. To evaluate reef condition in this area, a study comparing percent coverage of live and dead coral as well as the diversity of marine Animalia organisms was conducted at one reef site in Big Creek beach and one reef site in Boca del Drago, Isla Colón, Bocas del Toro. It was predicted that dead coral cover would be …

Differences In The Diversity Of Frogspecies Between Sierra Lloronaand El Valle, Panama, Kei Okabe Thurber

Independent Study Project (ISP) Collection

Panama is home to the greatest diversity of species in all of Central America. It is home to 174 species of frogs, 35 of which are endemic to Panama. Frogs are a vital part of many ecosystems. They maintain insect populations and act as food sources for larger predators. Their job of maintaining insect populations is essential to curbing the spread of diseases. Additionally, scientists have found chemical compounds in the skin of frogs that can be used to treat pain and prevent infections. The main threat to the majority of frogs is the deadly fungus Batrachochytrium dendrobatidis (Bd), or …

Comparing Disease Prevalence In Hard Corals At Four Different Reefs Near The Island Of Narganá In The Guna Yala Comarca Of Panamá, Connor Hinton

Independent Study Project (ISP) Collection

Coral reefs harbor much of the world’s known marine biodiversity. For a number of reasons, coral reefs are becoming increasingly threatened. Large portions of the world’s reefs have already been lost, and the number of degrading reefs is constantly on the rise. One cause for the destruction of coral reefs are coral diseases, ultimately causing coral mortality. With the death of corals, a key species is lost, endangering the entire reef ecosystem. Documenting the presence of such diseases could be useful in assessing current reef health and ameliorating the growing threat of coral diseases. In this project, 18 40m2 belt …

Evaluating The Progress Of A Mangrove Reforestation Project On Isla Galeta, Colon, Abigail Hope Outterson

Independent Study Project (ISP) Collection

Just off the Atlantic coast of Panama, a dynamic and self-renewing ecosystem takes advantage of the tropical climate and swampy conditions. Guarding Punta Galeta’s shores since before it was a U.S. navy base in the 1930’s, mangroves that have persisted here for centuries now draw scientists and tourists alike from all over the world to the Smithsonian Tropical Research Center. Once viewed as unproductive, distasteful environments, mangroves are increasingly recognized worldwide as critical habitat for endangered and commercially significant species, as well as for their ecological and aesthetic value. Uniquely adapted to survive in saline environments, mangroves combine methods of …

Oreaster Reticulatus: A Study Of 3 Aggregations In The Bocas Del Toro Archipelago, Rae Robinson

Independent Study Project (ISP) Collection

Las estrellas del mar son importantes para mantener un ecosistema estable y la cadena alimentaria de una sistema del mar. La especie de estrella del mar, Oreaster reticulatus, es un despredador de material particulada, algas, larvas pequeñas, y a veces tejido esponja. En el archipiélago de Bocas del Toro esta especie brillante es frecuente. Se ha sugerido que la competencia de alimentos entre individuos de las misma especie es un fenómeno que limitaría las recursos y por lo tanto las capacidades de crecimiento. Fue presumido que habría una relación inversa entre la densidad de población y tamaño de media …

A Case Study Of Rhincodon Typus Scarring In Ningaloo Reef: An Assessment Of The Current Scarring Classification System, Laura Korman

Independent Study Project (ISP) Collection

Rhincodon typus are the largest fish in the sea, but little is understood about this elusive species. They are known to annually aggregate in Ningaloo Reef, Western Australia—the location of this study. In order to better understand this species, scarring was observed on a subset of the population that aggregates in Ningaloo Reef. In addition, the scarring classification system was examined to determine if it is the most effective classification system. R. typus were observed, and photographed from April 9th-April 25th, 2014. These photos were then used for identification and scarring classification purposes. The analysis of the scars on R. …

Marine Turtle Health Assessment And Aquarium Suitability: Uzi Island, Zanzibar, Olivia “Warda” Crane

Independent Study Project (ISP) Collection

This study assessed the health of the marine turtles in the aquarium on Uzi Island. Health evaluations of each turtle included size, eating habit, and physical abnormalities. Behaviorally the sea turtles were observed at two different time periods multiple times. Results were compared to research on wild sea turtles. The conditions of the aquarium were evaluated for water quality and holding capacity. The water temperature, pH, and salinity levels were tested to assess the water quality. The results showed that the overall health of the sea turtles were positive from the normal activities and few abnormalities. The overall aquarium conditions …

Comparison Study Of Fish Species Richness Of Two Mangrove Forests On Misali Island: Eastern (Extractive) V. Western (Core) Mangrove Forests, Spencer M. Mallette

Independent Study Project (ISP) Collection

The fish species richness of two mangrove forests adjacent to non-extractive and extractive zones, respectively, was investigated on Misali Island, Tanzania. Observations were done at each site for seven samplings, recording the different species observed upon each visit. A general list of species found in the intertidal area was also composed to get an idea of what species use this region as well. A total of twenty-four species were observed between the two sites, leading to a similarity index of 0.29, representing very little similarity between the two stands. Two different diversity indices (Shannon-Wiener and Simpson’s) also supported the hypothesis …

Effects Of A Cymothoid Ectoparasite On The Turning Behavior (Lateralization) Of The Bridled Monocle Bream Scolopsis Bilineata, Laura Strong

Independent Study Project (ISP) Collection

Lateralization, or behavioral asymmetry, is the tendency to favor one side of the body over the other, and exists in humans and animals including in mammals, birds, and fishes. It has been found to increase performance in certain behaviors such as escape from predators by lowering reation time. Lateralization has predominantly genetic bases, but can also be influenced by environmental factors. For example, lateralization has been observed to increase in populations of fish subject to high predation pressure as it decreases their response time to predatory attacks. Parasitism may also have important effects on lateralization. In particular, increased drag from …