Terrestrial and Aquatic Ecology Commons^™

Mdpi Oceans: A New Publication Channel For Open Access Science Focused On The Ocean, Antonio Bode, Fátima Abrantes, Agostinho Antunes, Alvise Benetazzo, Chen-Tung A. Chen, Emmanuel Devred, Martin Gade, Eulàlia Gràcia, Jochen Horstmann, Diego Macías, Joseph M. Maina, Pere Masqué Barri, Nicholas Meskhidze, Luis Somoza

Research outputs 2014 to 2021

The ocean is the most important subsystem of the Earth’s climate system and functions as its heart, regulating the energy distribution of the planet. It has absorbed more than 90% of the energy accumulated since 1971 and about 30% of the emitted anthropogenic carbon dioxide. As a result, water temperature rises and oceans acidify and deoxygenate, which lead to changes in oceanic circulationand biogeochemistry, to rising sea levels, to more extreme weather events, to shifts in the distribution ofspecies and migratory routes, and to loss of species and habitat diversity. Awareness of the importanceof oceans for the sustainability of the …

The Oceanography And Marine Ecology Of Ningaloo, A World Heritage Area, Mathew A. Vanderklift, Russell C. Babcock, Peter B. Barnes, Anna K. Cresswell, Ming Feng, Michael D. E. Haywood, Thomas H. Holmes, Paul S. Lavery, Richard D. Pillans, Claire B. Smallwood, Damian P. Thomson, Anton D. Tucker, Kelly Waples, Shaun K. Wilson

Research outputs 2014 to 2021

The Ningaloo coast of north-western Australia (eastern Indian Ocean) hosts one of the world’s longest and most extensive fringing coral reef systems, along with globally significant abundances of large marine fauna such as whale sharks. These characteristics – which have contributed to its inscription on the World Heritage list – exist because of the unique climatic, geomorphologic and oceanographic conditions. The region is hot and arid, so runoff of water from land is low, facilitating clear water that allows corals to grow close to the shore. The poleward-flowing Leeuwin Current is an important influence, bringing warm water and generally suppressing …

Sdg 3: Good Health And Well-Being - Framing Targets To Maximise Co-Benefits For Forests And People, Rosemary A. Mcfarlane, John Barry, Guéladio Cissé, Maya Gislason, Marta Gruca, Kerryn Higgs, Pierre Horwitz, Giang Nguyen, Jane O'Sullivan, Subhashis Sahu, Colin D. Butler

Research outputs 2014 to 2021

Key Points: The achievement of SDG 3 depends on many other SDGs; some SDGs are logically inconsistent, especially in the attempt to increase conventionally defined GDP while preserving natural capital. Any short-term gains for human health from further forest conversion (e.g. food production) creates short- and long-term, direct and indirect health risks for humans, as well as for other biota. Failure to ensure universal access to sexual and reproductive healthcare services (including family planning) will increase pressure on forests at local, regional and global scales. The burning and clearing of forests cause significant harm to health via impaired quality of …

Causes And Possible Consequences Of Hybridisation In Angelfishes At Christmas Island, Federico Vitelli

Theses: Doctorates and Masters

The angelfishes (family Pomacanthidae) have the greatest proportion (~30%) of hybridising species, compared to other families of reef fishes, with 26 species implicated in hybridisation. However, very little is known about hybridisation in angelfish, especially in terms of fitness of the hybrids and possible ecological consequences. Hybrids between three species (C. flavissima, C. eibli and C. vroliki) in the genus Centropyge have previously been reported from Christmas island, where these have been observed in heterospecific harems and interbreeding. This provides the unique opportunity to examine the breakdown in assortative mating in marine fishes. The broad aim of this …

Expanding Greenland Seagrass Meadows Contribute New Sediment Carbon Sinks, Núria Marbà, Dorte Krause-Jensen, Pere Masque´, Carlos M. Duarte

Research outputs 2014 to 2021

The loss of natural carbon sinks, such as seagrass meadows, contributes to grenhouse gas emissions and, thus, global warming. Whereas seagrass meadows are declining in temperate and tropical regions, they are expected to expand into the Arctic with future warming. Using paleoreconstruction of carbon burial and sources of organic carbon to shallow coastal sediments of three Greenland seagrass (Zostera marina) meadows of contrasting density and age, we test the hypothesis that Arctic seagrass meadows are expanding along with the associated sediment carbon sinks. We show that sediments accreted before 1900 were highly 13C depleted, indicative of low inputs of seagrass …

Organic Carbon Sequestration And Storage In Vegetated Coastal Habitats Along The Western Coast Of The Arabian Gulf, M Cusack, V Saderne, A Arias-Ortiz, Pere Masque, P K. Krishnakumar, L Rabaoui, M A. Qusem, P Prihartato, R A. Loughland, A A. Elyas, C M. Duarte

Research outputs 2014 to 2021

Certain coastal ecosystems such as mangrove, saltmarsh and seagrass habitats have been identified as significant natural carbon sinks, through the sequestration and storage of carbon in their biomass and sediments, collectively known as 'blue carbon' ecosystems. These ecosystems can often thrive in extreme environments where terrestrial systems otherwise survive at the limit of their existence, such as in arid and desert regions of the globe. To further our understanding of the capability of blue carbon ecosystems to sequester and store carbon in such extreme climates, we measured carbon sediment stocks in 25 sites along the Western Arabian Gulf coast. While …

Trophic Roles Of Tadpoles In Tropical Australian Streams, Katrin Schmidt, Melanie L. Blanchette, Richard G. Pearson, Ross A. Alford, Aaron M. Davis

Research outputs 2014 to 2021

Tadpoles can be abundant consumers in stream ecosystems, and may influence the structure and function of streams through their feeding activities and interactions with other organisms. To understand the contribution of tadpoles to stream functioning, and the potential impact of their loss, it is necessary to determine their diets and how they might influence food-web structure. Using gut-content analysis and stable-isotope analysis of N and C, we determined the main food sources and trophic positions of tadpoles of five native frog species, invertebrates, and fish in upland and lowland Australian Wet Tropics streams. Omnivory was prevalent among the tadpoles and …

First Circumglobal Assessment Of Southern Hemisphere Humpback Whale Mitochondrial Genetic Variation And Implications For Management, Howard C. Rosenbaum, Francine Kershaw, Martín Mendez, Cristina Pomilla, Matthew S. Leslie, Ken P. Findlay, Peter B. Best, Timothy Collins, Michel Vely, Marcia H. Engel, Robert Baldwin, Gianna Minton, Michael Meÿer, Lilian Flórez-González, M. Michael Poole, Nan Hauser, Claire Garrigue, Muriel Brasseur, John Bannister, Megan Anderson, Carlos Olavarría, C. Scott Baker

Research outputs 2014 to 2021

The description of genetic population structure over a species' geographic range can provide insights into its evolutionary history and also support effective management efforts. Assessments for globally distributed species are rare, however, requiring significant international coordination and collaboration. The global distribution of demographically discrete populations for the humpback whale Megaptera novaeangliae is not fully known, hampering the definition of appropriate management units. Here, we present the first circumglobal assessment of mito - chondrial genetic population structure across the species' range in the Southern Hemisphere and Arabian Sea. We combine new and existing data from the mitochondrial (mt)DNA control region that …

Coastal Connectivity And Spatial Subsidy From A Microbial Perspective, Christin Säwström, Glenn A. Hyndes, Bradley D. Eyre, Megan J. Huggett, Matthew W. Fraser, Paul S. Lavery, Paul G. Thomson, Flavia Tarquinio, P. D. Steinberg, Bonnie Laverock

Research outputs 2014 to 2021

The transfer of organic material from one coastal environment to another can increase production in recipient habitats in a process known as spatial subsidy. Microorganisms drive the generation, transformation, and uptake of organic material in shallow coastal environments, but their significance in connecting coastal habitats through spatial subsidies has received limited attention. We address this by presenting a conceptual model of coastal connectivity that focuses on the flow of microbially mediated organic material in key coastal habitats. Our model suggests that it is not the difference in generation rates of organic material between coastal habitats but the amount of organic …

Accelerating Tropicalization And The Transformation Of Temperate Seagrass Meadows, Glenn A. Hyndes, Kenneth L. Heck, Jnr, Adriana Verges, Euan S. Harvey, Gary A. Kendrick, Paul Lavery, Kathryn Mcmahon, Robert J. Orth, Alan Pearce, Mathew Vanderklift, Thomas Wernberg, Scott Whiting, Shaun Wilson

Research outputs 2014 to 2021

Climate-driven changes are altering production and functioning of biotic assemblages in terrestrial and aquatic environments. In temperate coastal waters, rising sea temperatures, warm water anomalies and poleward shifts in the distribution of tropical herbivores have had a detrimental effect on algal forests. We develop generalized scenarios of this form of tropicalization and its potential effects on the structure and functioning of globally significant and threatened seagrass ecosystems, through poleward shifts in tropical seagrasses and herbivores. Initially, we expect tropical herbivorous fishes to establish in temperate seagrass meadows, followed later by megafauna. Tropical seagrasses are likely to establish later, delayed by …

Permanent Slides For Morphological Studies Of Small Crustaceans: Serban's Method And Its Variation Applied On Bathynellacea (Malacostraca), Giulia Perina, Ana I. Camacho

Research outputs 2014 to 2021

Morphological studies of small invertebrates often involve the preparation of slides to observe minute body parts under a compound microscope. Preparation should facilitate observation, through traditional optical microscopy, of small surface structures on different planes, like pores, spines and setae. Various methods and techniques, using different mounting media that specialists have adopted to observe and preserve small crustaceans, have their advantages and disadvantages.Within the order Bathynellacea, specimens in the family Bathynellidae are particularly challenging due to their small size (0.5 to 2.25 mm body length) and very delicate exoskeleton, which tends to be completely digested when using common clearing mounting …

Key Biogeochemical Factors Affecting Soil Carbon Storage In Posidonia Meadows, Oscar Serrano, Aurora M. Ricart, Paul S. Lavery, Miguel-Angel Mateo, Ariane Arias-Ortiz, Pere Masque, Mohammad Rozaimi, Andy D. L. Steven, Carlos Duarte

Research outputs 2014 to 2021

Biotic and abiotic factors influence the accumulation of organic carbon (C_org) in seagrass ecosystems.We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of C_org. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4m depth) accumulated 3- to 4-fold higher C_org stocks (averaging 6.3 kgC_org m^-2) at 3- to 4-fold higher rates (12.8 gC_org m^-2 yr^-1/ compared to meadows closer to the deep limits of distribution …

Predicting The Impact Of Future Climate On Ecologically Important Macroalgae, Charlie Phelps

Theses: Doctorates and Masters

Macroalgae play an important role in coastal reef systems and are often referred to as ecosystem engineers. They serve as primary producers, supporting a diverse range of organisms, and are a sink for atmospheric CO2. Water acidification and ocean warming caused by anthropogenic activities are affecting many marine flora and fauna, potentially impacting the physical and chemical performance of macroalgae and the consumption rates of associated herbivores. Many studies have focused on ocean acidification or ocean warming individually but there is an overall lack of research investigating the combined effects and the ensuing repercussions on consumer-prey relationships.

Three species of …

Evolution, Systematics & Geographic Parthenogenesis Of Ilyodromus (Crustacea, Ostracoda), Rylan James Shearn

Theses

Most multicellular organisms reproduce sexually at some point in their life cycle. This is paradoxical because being asexual is theoretically far more advantageous. Asexual organisms do not need to find and court new mates, they reproduce at a faster rate, and with no males, all members of the population contribute toward population growth rate. With over 20, often mutually exclusive hypotheses, this paradox resists a synthesised explanation, and continues to represent one of the largest gaps in our understanding of fundamental evolutionary theory. Clearly, more real world studies are required that document the selective mechanisms underlying differences in evolutionary fitness …

Dynamics Of Baseline Stable Isotopes Within A Temperate Coastal Ecosystem: Relationships And Projections Using Physical And Biogeochemical Factors, Andrew Mackey

Theses: Doctorates and Masters

Measurements of carbon (13C/12C; δ13C) and nitrogen (15N/14N; δ15N) stable isotope ratios have become important tools for: estimating energy flow and trophic positions in aquatic foodwebs; comparing food webs; and aiding in the tracking of wide-ranging consumers. However, each of these applications requires accurate measurements of isotopic signatures in organisms at or near the base of the food web (e.g. autotrophs and their consumers), which act as basal reference points from which to calibrate inferences. Therefore, understanding variations in isotopic baselines, and the mechanisms leading to their variability, is crucial for food web ecology.

Using the shallow temperate reefs along …

The Movement Ecology Of Seagrasses, Kathryn Mcmahon, Kor-Jent Van Dijk, Leonardo Ruiz-Montoya, Gary A. Kendrick, Siegfried L. Krauss, Michelle Waycott, Jennifer Verduin, Ryan Lowe, John Statton, Eloise Brown, Carlos Duarte

Research outputs 2014 to 2021

A movement ecology framework is applied to enhance our understanding of the causes, mechanisms and consequences of movement in seagrasses: marine, clonal, flowering plants. Four life-history stages of seagrasses can move: pollen, sexual propagules, vegetative fragments and the spread of individuals through clonal growth. Movement occurs on the water surface, in the water column, on or in the sediment, via animal vectors and through spreading clones. A capacity for long-distance dispersal and demographic connectivity over multiple timeframes is the novel feature of the movement ecology of seagrasses with significant evolutionary and ecological consequences. The space–time movement footprint of different life-history …

Systematics And Biogeography Of The Australian Burrowing Freshwater Crayfish Genus Engaewa Riekk (Decapoda: Parastacidae), Quinton Burnham

Theses: Doctorates and Masters

The overall aim of this study was to explore the systematics and biogeographic patterns of the freshwater crayfish genus Engaewa Riek, a strongly burrowing freshwater crayfish restricted to the coastal corner of south-western Australia (SWA). The genus Engaewa is a Gondwanan relict with great potential as a marker of historical processes, due to its high habitat specificity and low dispersal ability. This study comprises an extensive taxonomic and phylogenetic revision of the genus Engaewa (using both molecular and morphological data), a detailed study of its distribution and uses the knowledge gained to explore biogeographic patterns in the biodiversity hotspot of …

Persons As Plants: Ecopsychology And The Return To The Dream Of Nature, Monica Gagliano

Landscapes: the Journal of the International Centre for Landscape and Language

Abstract. In this article, I examine human-plant perceptions and interactions in terms of developing a new perspective on the perception and the actions of people towards plants. By combining my scientific understanding of the biological world and my own experiences working with plant shamans, storytellers and mystics from around the world, I engage with the idea that the hierarchical structure by which Western science defines the variety of life forms as ‘primitive’ or ‘more evolved’ is at the root of the current environmental crisis and I argue that the solution to it rests in a change of this very perspective.

Metapopulation Theory Explains Black-Stripe Minnow (Pisces: Galaxiidae, Galaxiella Nigrostriata) Distribution In Seasonal Wetlands In South-West Western Australia, David M. Galeotti

Theses: Doctorates and Masters

The objective of this project was to determine if Galaxiella nigrostriata populations could belong to a metapopulation. Metapopulation theory describes how multiple populations with occasional connectivity are a ‘population of populations’. Some populations’ habitats have optimal conditions (source habitats), others experience regular extinctions (sink habitats). Connectivity allows repopulation of extinct or uninhabited habitats. Galaxiella nigrostriata occurred randomly in 11 seasonal wetlands in the Kemerton wetland complex in south-west Western Australia over a 16 year period. The wetlands did not appear to be connected.

Around 70% of wetlands on the Swan Coastal Plain in south-west WA have been filled or degraded …

The Biology And Ecology Of Epinephilidae Speciea And Their Implications To Fisheries Management, Jason R. How

Theses: Doctorates and Masters

This thesis examines the biological and ecological aspects of members of the globally exploited Epinephilidae with reference to fisheries management and in particular the use of closures. The leopard coralgrouper Plectropomus leopardus is a common reef fish throughout the Indo-Pacific region and a major target of both commercial and recreational fisheries. There has been limited research on this species in the eastern Indian Ocean, where there are only two populations. An examination of the species found a number of significant biological differences to their eastern Australian con-specifics. Most noticeable was the strong size-related cue over their protogynous sex change. The …

Herbivory By Parma Mccullochi (Pomacentridae) : Its Role As An Ecosystem Engineer In Temperate Algal-Dominated Reefs, Frederico Vitelli

Theses: Doctorates and Masters

Pomacentridae is one of the most representative families of herbivorous fishes inhabiting both tropical and temperate reefs, yet the vast majority of studies examining feeding within this family have been undertaken in tropical rather than temperate regions. Despite the high abundances of the pomacentrid Parma mccullochi in temperate waters of Western Australia, and their likely importance in removing algae from reefs in the region, there is a lack of information on their diet and their impact on the reef algal community. This study aims to determine the role of Parma mccullochi as an ecosystem engineer on temperate algal-dominated reefs in …

Threats And Knowledge Gaps For Ecosystem Services Provided By Kelp Forests: A Northeast Atlantic Perspective, Dan A. Smale, Michael T. Burrows, Philippa J. Moore, Nessa O'Connor, Stephen J. Hawkins

Research outputs 2013

Kelp forests along temperate and polar coastlines represent some of most diverse and productive habitats on the Earth. Here, we synthesize information from >60 years of research on the structure and functioning of kelp forest habitats in European waters, with particular emphasis on the coasts of UK and Ireland, which represents an important biogeographic transition zone that is subjected to multiple threats and stressors. We collated existing data on kelp distribution and abundance and reanalyzed these data to describe the structure of kelp forests along a spatial gradient spanning more than 10° of latitude. We then examined ecological goods and …

Pine As Fast Food: Foraging Ecology Of An Endangered Cockatoo In A Forestry Landscape, William Stock, Hugh Finn, Jackson Parker, Ken Dods

Research outputs 2013

Pine plantations near Perth, Western Australia have provided an important food source for endangered Carnaby’s Cockatoos (Calyptorhynchus latirostris) since the 1940s. Plans to harvest these plantations without re-planting will remove this food source by 2031 or earlier. To assess the impact of pine removal, we studied the ecological association between Carnaby’s Cockatoos and pine using behavioural, nutritional, and phenological data. Pine plantations provided high densities of seed (158 025 seeds ha21) over a large area (c. 15 000 ha). Carnaby’s Cockatoos fed throughout these plantations and removed almost the entire annual crop of pine cones. Peak cockatoo abundance coincided with …

Coastal Bacterioplankton Community Dynamics In Response To A Natural Disturbance, Sara K. Yeo, Megan J. Huggett, Alexander Eiler, Michael Rappe

Research outputs 2013

In order to characterize how disturbances to microbial communities are propagated over temporal and spatial scales in aquatic environments, the dynamics of bacterial assemblages throughout a subtropical coastal embayment were investigated via SSU rRNA gene analyses over an 8-month period, which encompassed a large storm event. During non-perturbed conditions, sampling sites clustered into three groups based on their microbial community composition: an offshore oceanic group, a freshwater group, and a distinct and persistent coastal group. Significant differences in measured environmental parameters or in the bacterial community due to the storm event were found only within the coastal cluster of sampling …

Applying The Principles Of Spatial Modelling To The Management Of Biodiversity In The Fragmented Landscapes Of South-Western Australia, Shaun Molloy

Theses: Doctorates and Masters

Biodiversity conservation throughout the world is challenged by the impacts of a changing climate on fragmented landscapes. To mitigate these threats, conservation managers require models which can demonstrate the consequences of both negative impacts and management actions. This need can be addressed through spatial modelling applications. Unfortunately, throughout much of the world, spatial modelling is forgone, being seen as requiring skills and resources beyond the means of many conservation planners and managers. This thesis seeks to address this dilemma by delivering criteria for a successful modelling application and by providing case studies which demonstrate how appropriate modelling can be undertaken …

Food Resource Availability For Carnaby's Cockatoo Calyptorhynchus Latirostris On The Swan Coast Plain, Teagan Johnston

Theses: Doctorates and Masters

To achieve a balance between sustainable development and conservation of threatened species, management depends on understanding the predicted response and interaction of that species with their environment in order to develop appropriate mitigating solutions. The Carnaby’s cockatoo Calyptorhynchus latirostris is declining across much of its range due to the detrimental effect of habitat degradation and loss. Since the decline of food resource availability in non-breeding areas is believed to be contributing to the reduction in the number of Carnaby’s cockatoos knowledge of the birds’ foraging ecology and the influence of external factors on food resource availability is essential for effective …

Swamp : Walking The Wetlands Of The Swan Coastal Plain ; And With The Exegesis, A Walk In The Anthropocene: Homesickness And The Walker-Writer, Anandashila Saraswati

Theses: Doctorates and Masters

This project is comprised of a creative work and accompanying exegesis. The creative work is a collection of poetry which examines the history and ecology of the wetlands and river systems of the Swan Coastal Plain, and which utilises the practice of walking as a research methodology. For the creative practitioner walking reintroduces the body as a fundamental definer of experience, placing the investigation centrally in the corporeal self, using the physical senses as investigative tools of enquiry. As Rebecca Solnit comments in her history of walking, ‘exploring the world is one of the best ways of exploring the mind, …

Diversity Among Macroalgae-Consuming Fishes On Coral Reefs: A Transcontinental Comparison, Adriana Verges, Scott Bennett, David R. Bellwood

Research outputs 2012

Despite high diversity and abundance of nominally herbivorous fishes on coral reefs, recent studies indicate that only a small subset of taxa are capable of removing dominant macroalgae once these become established. This limited functional redundancy highlights the potential vulnerability of coral reefs to disturbance and stresses the need to assess the functional role of individual species of herbivores. However, our knowledge of species-specific patterns in macroalgal consumption is limited geographically, and there is a need to determine the extent to which patterns observed in specific reefs can be generalised at larger spatial scales. In this study, video cameras were …

A Meta-Analysis Of Seaweed Impacts On Seagrasses: Generalities And Knowledge Gaps, Mads Thomsen, Thomas Wernberg, Aschwin H. Engelen, Fernando Tuya, Mat A. Vanderklift, Marianne Holmer, Karen J. Mcglathery, Francisco Arenas, Jonne Kotta, Brian R. Silliman

Research outputs 2012

Seagrasses are important habitat-formers and ecosystem engineers that are under threat from bloom-forming seaweeds. These seaweeds have been suggested to outcompete the seagrasses, particularly when facilitated by eutrophication, causing regime shifts where green meadows and clear waters are replaced with unstable sediments, turbid waters, hypoxia, and poor habitat conditions for fishes and invertebrates. Understanding the situations under which seaweeds impact seagrasses on local patch scales can help proactive management and prevent losses at greater scales. Here, we provide a quantitative review of available published manipulative experiments (all conducted at the patch-scale), to test which attributes of seaweeds and seagrasses (e.g., …

The Impact Of Black Swan (Cygnus Atratus) Grazing On The Seagrass Halophila Ovalis In The Lower Swan River Estuary, Gary Choney

Theses: Doctorates and Masters

Grazing is an important ecosystem process, influencing community structure and rates of ecosystem processes. Although grazing on seagrasses is generally considered to be minor in many temperate regions of the world, waterfowl are often considered significant grazers in temperate lagoons and estuaries. This study examined spatial and temporal variation in swan abundance, grazing pressure and the impact grazing has on seagrass. Little is known on how grazing rates vary on larger water bodies in the southern hemisphere at different times of year and whether temporal changes in grazing rates affect the ability of seagrasses to tolerate grazing. The plant response …