Terrestrial and Aquatic Ecology Commons^™

Guided Alligator Tours Or Raccoon Schooling (Gators), Paul List

Senior Theses

In my two main internships during college, I worked closely with two very different animals: raccoons and alligators. Additionally, I gained experience in presenting educational programs during my internship at Fripp Island, where my most common program was our Gator Walk. For my thesis project, I built upon my experience in interpretive programming, drawing on my experience with alligators and raccoons to develop a unique educational program to present at Congaree National Park. This report will describe the process of developing this program as well as it’s implementation and outcomes. In addition, it includes a review of scholarly literature on …

Improving Risk Assessment Of The Emergence Of Novel Influenza A Viruses By Incorporating Environmental Surveillance, Kim M. Pepin, Matthew W. Hopken, Susan A. Shriner, Erica Spackman, Zaid Abdo, Colin Parrish, Steven Steven, James O. Lloyd-Smith, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Reassortment is an evolutionary mechanism by which influenza A viruses (IAV) generate genetic novelty. Reassortment is an important driver of host jumps and is widespread according to retrospective surveillance studies.However, predicting the epidemiological risk of reassortant emergence in novel hosts from surveillance data remains challenging. IAV strains persist and cooccur in the environment, promoting co-infection during environmental transmission. These conditions offer opportunity to understand reassortant emergence in reservoir and spillover hosts. Specifically, environmental RNA could provide rich information for understanding the evolutionary ecology of segmented viruses, and transform our ability to quantify epidemiological risk to spillover hosts. However, significant challenges …

Coarse Particulate Organic Matter Dynamics In Ephemeral Tributaries Of A Central Appalachian Stream Network, Ken M. Fritz, Gregory J. Pond, Brent R. Johnson, Chris D. Barton

Forestry and Natural Resources Faculty Publications

Headwater ephemeral tributaries are interfaces between uplands and downstream waters. Terrestrial coarse particulate organic matter (CPOM) is important in fueling aquatic ecosystems; however, the extent to which ephemeral tributaries are functionally connected to downstream waters through fluvial transport of CPOM has been little studied. Hydrology and deposition of leaf and wood, and surrogate transport (Ginkgo biloba leaves and wood dowels) were measured over month‐long intervals through the winter and spring seasons (6 months) in 10 ephemeral tributaries (1.3–5.4 ha) in eastern Kentucky. Leaf deposition and surrogate transport varied over time, reflecting the seasonality of litterfall and runoff. Leaf deposition …

A Long-Term (2002 To 2017) Record Of Closed-Path And Open-Path Eddy Covariance Co2 Net Ecosystem Exchange Fluxes From The Siberian Arctic, David Holl, Christian Wille, Torsten Sachs, Peter Schreiber, Benjamin R. K. Runkle, Lutz Beckebanze, Moritz Langer, Julia Boike, Eva-Maria Pfeiffer, Irina Fedorova, Dimitry Y. Bolshianov, Mikhail N. Grigoriev, Lars Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

Ground-based observations of land–atmosphere fluxes are necessary to progressively improve global climate models. Observed data can be used for model evaluation and to develop or tune process models. In arctic permafrost regions, climate–carbon feedbacks are amplified. Therefore, increased efforts to better represent these regions in global climate models have been made in recent years. We present a multi-annual time series of land–atmosphere carbon dioxide fluxes measured in situ with the eddy covariance technique in the Siberian Arctic (72◦220 N, 126◦300 E). The site is part of the international network of eddy covariance flux observation stations (FLUXNET; site ID: Ru-Sam). The …

Spatial And Temporal Variability In Post-Larval Yellow Perch Density, Steve Hauschildt

Biology Graduate Theses

Yellow Perch Perca flavescens are important as forage for other species and for sport fishing in many northern lakes. However, estimating post-larval Yellow Perch populations can be difficult because of many environmental factors that cause unexplained variation. The objective of this study was to help reduce unexplained variation by determining a post-larval Yellow Perch population density estimate on Blackduck Lake, MN, provide guidance to help determine the number of trawls required for trawling-based recruitment indices to achieve varying levels of precision, and test for the effects of wind speed and direction on post-larval Yellow Perch spatial variability. This study estimated …

Habitat Usage Patterns Of Bottlenose Dolphins (Tursiops Truncatus) In Terrebonne And Timbalier Bays, Louisiana, Mary Allison Manning

LSU Master's Theses

I coupled fine-scale environmental data with observed behavior and group composition data to examine overall distribution within the bay system and to characterize the habitat associated with foraging and the presence of calves. Semi-isolated populations of bottlenose dolphins (Tursiops truncatus) along Louisiana’s coast are undergoing increased risks from boat traffic, oil spills, land subsidence, and planned water diversions (CPRA 2017). Characterizing the habitat use of bottlenose dolphins in Terrebonne and Timbalier bays, Louisiana, is important given the likely high site fidelity, small home ranges, and low exchange of individuals with nearby coastal populations (Lane et al. 2015, McDonald …

Evaluation Of An Educational Campaign To Improve The Conscious Consumption Of Recreationally Caught Fish, Corey A. Krabbenhoft, Susan Manente, Donna R. Kashian

Environmental Science and Geology Faculty Research Publications

Consumption guidelines are a common way of improving conscious consumption behaviors in areas where game fish are known to contain contaminants. However, guideline information can be difficult to distribute, and effectiveness difficult to measure. To increase the distribution and effectiveness of guideline information for the Detroit River, an educational campaign was launched in 2010, which included distribution of pamphlets with consumption information, posting of permanent signs at popular fishing locations, and hiring River Walkers to personally communicate with anglers. In 2013 and 2015, we conducted in-person surveys of active shoreline anglers to determine the effectiveness of education and outreach efforts. …

Individual-Level Antibody Dynamics Reveal Potential Drivers Of Influenza A Seasonality In Wild Pig Populations, Kim M. Pepin, Kerri Pedersen, Xiu-Feng Wan, Fred L. Cunningham, Colleen T. Webb, Mark Q. Wilber

United States Department of Agriculture Wildlife Services: Staff Publications

Swine are important in the ecology of influenza A virus (IAV) globally. Understanding the ecological role of wild pigs in IAV ecology has been limited because surveillance in wild pigs is often for antibodies (serosurveillance) rather than IAVs, as in humans and domestic swine. As IAV antibodies can persist long after an infection, serosurveillance data are not necessarily indicative of current infection risk. However, antibody responses to IAV infections cause a predictable antibody response, thus time of infection can be inferred from antibody levels in serological samples, enabling identification of risk factors of infection at estimated times of infection. Recent …

Oak Lake Wetland Restoration: Difference In Hydrology Between Newly Restored And Reference Wetlands, Jennifer A. Dailey, Nels H. Troelstrup Jr.

Oak Lake Field Station 30th Anniversary Retreat Presentations

No abstract provided.

Using Dna To Identify The Source Of Invasive Mongooses, Herpestes Auropunctatus (Carnivora: Herpestidae) Captured On Kaua‘I, Hawaiian Islands, Darren J. Wostenberg, Matthew W. Hopken, Aaron B. Shiels, Antoinette J. Piaggio

United States Department of Agriculture Wildlife Services: Staff Publications

Two small Indian mongooses (Herpestes auropunctatus) were live-captured in 2012 at separate locations on the Hawaiian Island of Kaua'i, which was previously considered to be free of this invasive species. Genotypes from these two individuals were compared to genotypes of H. auropunctatus from the islands of Hawai'i (n =39), O'ahu (n =91), Maui (n = 39), and Moloka'i (n = 19) to determine the island of origin of the Kaua'i individuals. Genotypes were generated from each individual using five microsatellite loci. Genetic clustering was estimated by Bayesian inference of spatial clustering of individuals and …

Reducing Prairie Dog Populations And Damage By Castration Of Dominant Males, Gary W. Witmer

United States Department of Agriculture Wildlife Services: Staff Publications

Black-tailed prairie dogs (Cynomys ludovicianus) occur widely across the prairie states of North America. They compete with livestock for forage, transmit plague, and damage lawns, landscaping, and property. Interest in non-lethal methods, such as immunocontraception, is growing; however, reductions in the population due to contraception may be offset by increases in survival because adults and yearlings are not subject to the energetic demands of reproduction, and lower densities may increase the amount of resources available to growing offspring. Surgical sterilization provides a means for modeling these effects. Thus, we castrated males prior to the 1998 breeding season to simulate the …

Management Recommendations For Ecological Restoration On The Little River Parcel, Maya Sady Partain, Garitt Mathews

Environmental Science & Management Senior Capstones

Ecological restoration is an important aspect of land management. Data collection and ongoing monitoring help inform restoration decisions and determine their effectiveness. In this project, we followed a monitoring protocol provided by the Trinidad Coastal Land Trust to assess the 2019 status of their Little River parcel, a fifteen-acre area near the mouth of Little River in Trinidad, California. We performed a site analysis of invasive plant species and recorded their extent and location, as well as noting other observations of the ecology, topography, and biology of the site. After making our observations, we recommended land management methods woven together …

Wetland Biogeochemical Responses To Predicted Climate Change Scenarios, Angela R. Shaffer

College of Graduate Studies: Theses & Dissertations

Wetlands are one of the world's largest known carbon sinks while comprising only a small amount of the Earth's surface. However, the amount of carbon sequestered by wetlands is shrinking as droughts and human disturbance increases. Carbon in wetlands is stored through the contrast of decomposition and sedimentation of organic matter and absorption of CO₂ from the atmosphere by soil microbes. Understanding how changing hydrological regimes and increased wildfires will affect wetland soil and microbial processes is important in the face of predicted climate change for future wetland conservation practices. Specifically, I seek to understand the response of southeastern …

Effect Of Water Velocity And Temperature On Energy Use, Behavior, And Mortality Of Pallid Sturgeon Scaphirhynchus Albus Larvae, Joseph Thomas Mrnak

Electronic Theses and Dissertations

Pallid Sturgeon Scaphirhynchus albus are a federally endangered species endemic to the Missouri River basin. Natural reproduction has been limited for decades and a recruitment bottleneck is hypothesized to occur during the larval stage of development. Understanding factors that affect survival of Pallid Sturgeon larvae is key given their critical status and ongoing recovery efforts. In this study, I evaluated the effects of water velocity and temperature on energy use, behavior, and mortality of endogenously feeding Pallid Sturgeon larvae (< 25 mm TL). In the first experiment, I examined the effect of water velocity (0 – 8.3 cm s⁻¹) on larval growth, energy density, swimming activity, and mortality. Larval growth rate at 16.3 °C was similar across …

Prairie Dogs And Livestock In Rangeland Systems: Balancing Biodiversity And Production In The Northern Mixed-Grass Prairie, Jameson Robert Brennan

Electronic Theses and Dissertations

A major constraint of beef production within the Standing Rock Reservation has been identified as a reduction in rangeland quality due in large part to wide-scale colonization by black-tailed prairie dogs (Cynomys ludovicianus). The desire exists within the community to design a holistic framework which incorporates livestock management with the goal of increasing production and rangeland health while still maintaining increased diversity associated with prairie dogs. Prairie dogs reduce the carrying capacity of cattle on rangelands by up to 50% on occupied hectares through direct consumption of vegetation and waste due to clipping to improve detection of predators. Livestock stocking …

Assessment Of Quantity And Quality Of Microplastics In The Sediments, Waters, Oysters, And Selected Fish Species In Key Sites Along The Bombong Estuary And The Coastal Waters Of Ticalan In San Juan, Batangas, Emilyn Q. Espiritu, Sophia Angeli Sn Dayrit, Annabel Soledad O. Coronel, Natasha Sophia C. Paz, Pilar Isabel L. Ronquillo, Virgil Christian G. Castillo, Erwin P. Enriquez

Chemistry Faculty Publications

Microplastics (or MPs; < 5 mm in size) pollution is largely unstudied in the Philippines. From an environmental sustainability standpoint, it is important to understand the characteristics, abundance, and environmental fate of plastic debris of various sizes, and these include microplastics that are not more easily and readily detected. In this study, we assessed the extent of microplastics contamination in the sediments, waters, oysters, and selected fishes found in the rivers and coastal areas of Ticalan, Batangas, which were identified from water quality parameters as Class C and CS, respectively. The microplastics were extracted from these samples by chemical digestion of the matrix, series of filtration, and separation by flotation through a density gradient to finally isolate the microplastics which were not dissolved by chemical digestion. The isolated samples were imaged by optical microscopy and characterized based on their descriptive attributes. The results showed the presence of microplastics in all the samples tested, which were found mostly in the form of filaments, fragments, films, and pellets – with most showing weathered, degraded, or angular and irregular surfaces. Identification was done through spectral matching of the Fourier transform infrared spectra of isolated fragments with that of known plastics, although identification in some cases is made uncertain by possibility of degradation of the plastics in the environment. The majority of the isolates showed signature absorption bands of the C-H stretching vibrations of polyethylene-based plastics.

Gateways-Nd: Building The Institutional Infrastructure Towards Viable Postsecondary Stem Education Reform, J.M.D. Motschenbacher, M. Vosen Callens, J. Nyachwaya, E. Berg, J. Ladbury, R. Reichenbach, P. Kelter

School of Natural Resources: Documents and Reviews

No abstract provided.

Riparian Resilience In The Face Of Interacting Disturbances: Understanding Complex Interactions Between Wildfire, Erosion, And Beaver (Castor Canadensis) In Grazed Dryland Riparian Systems Of Low Order Streams In North Central Washington State, Usa, Alexa Whipple

EWU Masters Thesis Collection

Riparian systems of low order streams in the western United States (US) provide critical ecosystem functions and services such as diverse habitat for numerous species, flood attenuation and essential water storage in water limited environments. These systems have experienced long term disturbance from anthropogenic activities including mining, timber harvest, livestock grazing and near extirpation of a keystone riparian species, Castor canadensis (North American beaver). However, increasing frequency of large-scale wildfires and climate change driven weather is altering the severity and scale of riparian disturbance, often shifting highly impacted streams to a stable degraded state, unable to store water or provide …

Home Range, Habitat Use And Thermal Ecology Of The Florida Box Turtle (Terrapene Bauri) On An Anthropogenic Island In Southwestern Florida, Christina Demetrio

Antioch University Dissertations & Theses

Limited information is available on the ecology of Terrapene bauri (Florida Box Turtle) in mangrove ecosystems. Radio-telemetry and iButton data loggers were used to study the home range, habitat use, and thermal ecology of ten Florida Box Turtles on an anthropogenic island in the mangrove-dominated region of southwestern Florida. The effects of weather variables on movement and activity were also examined. Home range analysis using Minimum Convex Polygons (MCP) and Kernel Density Estimates (KDE) determined an average home range size of 0.81 ha (MCP) and 2.32 ha (95% KDE). Box Turtles moved an average distance of 6.3 m per day …

Changes In Walleye Fecundity And Egg Size Before, During, And After Rehabilitation Of The Red Lakes Fishery, Benjamin J. Miller, Benjamin D. Erb

Journal of Earth and Life Science

The Red Lakes in northern Minnesota experienced a major Walleye Sander vitreus fishery crash in the late 20th century, but has since recovered to record abundances and supports a major commercial and recreational fishery. Fecundity is an integral aspect of recruitment that can contribute greatly to the understanding of fishery population dynamics. To elucidate the effects of varying Walleye densities and exploitation rates on fecundity and egg size in years 1989 (overexploited fishery), 2004 (recovering fishery), and 2017 (recovered fishery), we analyzed linear models that related fecundity or egg size to morphological features for these three sampling periods. Walleyes were …

Cause‐Specific Mortality Of The World’S Terrestrial Vertebrates, Jacob E. Hill, Travis L. Devault, Jerrold L. Belant

United States Department of Agriculture Wildlife Services: Staff Publications

Aim: Vertebrates are declining worldwide, yet a comprehensive examination of the sources of mortality is lacking. We conducted a global synthesis of terrestrial vertebrate cause‐specific mortality to compare the sources of mortality across taxa and determine predictors of susceptibility to these sources of mortality.

Location: Worldwide.

Time period: 1970–2018.

Major taxa studied: Mammals, birds, reptiles and amphibians.

Methods: We searched for studies that used telemetry to determine the cause of death of terrestrial vertebrates. We determined whether each mortality was caused by anthropogenic or natural sources and further classified mortalities within these two categories (e.g. harvest, vehicle collision and predation). …

Feral Swine Harming Insular Sea Turtle Reproduction: The Origin, Impacts, Behavior And Elimination Of An Invasive Species, Richard M. Engeman, Robert W. Byrd, Jamie Dozier, Mark A. Mcalister, James O. Edens, Elizabeth M. Kierepka, Timothy J. Smyser, Noel Myers

United States Department of Agriculture Wildlife Services: Staff Publications

Feral swine are among the world's most destructive invasive species wherever they are found, with translocations figuring prominently in their range expansions. In contrast, sea turtles are beloved species that are listed as threatened or endangered throughout the world and are the focus of intense conservation efforts. Nest predation by feral swine severely harms sea turtle reproduction in many locations around the world. Here we quantify and economically assess feral swine nest predation at North Island, South Carolina, an important loggerhead sea turtle nesting beach. Feral swine depredation of North Island sea turtle nests was first detected in 2005, with …

A Bioeconomic Model For The Optimization Of Local Canine Rabies Control, Aaron Anderson, Johann Kotze, Stephanie A. Shwiff, Brody Hatch, Chris Slootmaker, Anne Conan, Darryn Knobel, Louis H. Nel

United States Department of Agriculture Wildlife Services: Staff Publications

We present a new modeling tool that can be used to maximize the impact of canine rabies management resources that are available at the local level. The model is accessible through a web-based interface that allows for flexibility in the management strategies that can be investigated. Rabies vaccination, sterilization, chemo-contraception, and euthanasia can be specified and limited to specific demographic groups. Additionally, we allowed for considerable complexity in the specification of management costs. In many areas, the costs of contacting additional dogs increases as management effort increases, and this can have important strategic implications. We illustrated the application of the …

No Detection Of Brodifacoum Residues In The Marine And Terrestrial Food Web Three Years After Rat Eradication At Palmyra Atoll, Central Pacific, A. Wegmann, G. Howald, S. Kropidlowski, N. Holmes, A.B. Shiels

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive alien species represent one of the greatest threats to native plants and animals on islands. Rats (Rattus spp.) have invaded most of the world’s oceanic islands, causing lasting or irreversible damage to ecosystems and biodiversity. To counter this threat, techniques to eradicate invasive rats from islands have been developed and applied across the globe. Eradication of alien rats from large or complex island ecosystems has only been successful with the use of bait containing a rodenticide. While effective at eradicating rats from islands, rodenticide can persist in the ecosystem longer than the time required to eradicate the target rat …

Ecological Functions Of Vertebrate Scavenging, James C. Beasley, Zachary H. Olson, Nuria Selva, Travis L. Devault

United States Department of Agriculture Wildlife Services: Staff Publications

Introduction

The role of vertebrate scavenging in food web dynamics has historically been minimalized and portrayed as the activity of a select group of obligate scavengers (e.g., vultures), with a simplistic linkage between carrion and detritivores in food webs. Research in the last few decades, however, has revealed that the role of carrion in food web dynamics is severely underestimated, highly complex, and pervasive among ecosystems across the globe (DeVault et al. 2003; Selva and Fortuna 2007; Wilson and Wolkovich 2011). Such observations have led to a surge in research interest in scavenging ecology that continues to reveal new information …

Biogeochemical Response To Vegetation And Hydrologic Change In An Alaskan Boreal Fen Ecosystem, Danielle L. Rupp

Dissertations, Master's Theses and Master's Reports

Boreal peatlands store approximately one third of the earth’s terrestrial carbon, locked away in currently waterlogged and frozen conditions. Peatlands of boreal and arctic ecosystems are affected increasingly by shifting hydrology caused by climate change. The consequences of these relatively rapid ecosystem changes on carbon cycling between the landscape and the atmosphere could provide an amplifying feedback to climate warming. Alternatively, the advancement of terrestrial vegetation into once waterlogged soils could uptake carbon as a sink. Previous work suggests that fens will become an increasingly dominant landscape feature in the boreal. However, studies investigating fens, their response to hydrologic and …

The Effect Of Vegetative Structure On Nest-Burrow Selection By The Western Burrowing Owl: Comparing Traditional Methods To Photogrammetry With An Unmanned Aerial System, Dylan J. Steffen

Master's Theses or Doctor of Nursing Practice

The shortgrass prairie ecoregion in the United States has been reduced to 52% of its historical extent, contributing to reduced habitat for native species. One such species is the Burrowing Owl (Athene cunicularia). The Western Burrowing Owl subspecies (A. c. hypugaea) is listed as a Species of Special Concern in nearly every western and midwestern state, including Kansas where it is designated as a Tier II Species of Greatest Conservation Need. Habitat destruction due to conversion to cropland, increasing use of pesticides, and reduction in burrowing mammal abundance are the primary threats that have led to …

Mind The Gap: Experimental Tests To Improve Efficacy Of Fladry For Nonlethal Management Of Coyotes, Julie K. Young, John Draper, Stewart Breck

United States Department of Agriculture Wildlife Services: Staff Publications

Coyotes (Canis latrans) are the top predator of livestock in the contiguous United States. Developing more effective nonlethal tools to prevent coyote depredation will facilitate coexistence between livestock producers and coyotes. Fladry is a nonlethal deterrent designed to defend livestock by creating a visual barrier to wolves (C. lupus). Fladry may also be effective with coyotes, but large gap spacing between flags may reduce its efficacy. To address this issue, we performed 2 experiments on captive coyotes using fladry modified to reduce gap spacing at the U.S. Department of Agriculture, Predator Research Facility in Millville, Utah, USA, during 2015–2016 and …

What Are The Transmission Mechanisms Of Influenza A Viruses In Wild Mammals?, J. Jeffrey Root

United States Department of Agriculture Wildlife Services: Staff Publications

Some influenza A viruses (IAVs) represent serious potential threats to public and agricultural health, with 3 notable examples from the past decade. During 2009, a novel H1N1 IAV (A[H1N1]pdm09), which was first detected in the United States, spread rapidly throughout many regions of the world. In the United States alone, the Centers for Disease Control and Prevention estimated that >60 million human cases were associated with this emergent and pandemic virus. During 2013, a novel H7N9 avian-origin IAV (Asian lineage avian influenza A[H7N9] virus) was first detected in China. This virus not only cost the poultry industry more than $1 …

Analysis Of Iophenoxic Acid Analogues In Small Indian Mongoose (Herpestes Auropunctatus) Sera For Use As An Oral Rabies Vaccination Biological Marker, Are R. Berentsen, Robert T. Sugihara, Cynthia G. Payne, Israel Leinbach, Steven F. Volker, Ad Vos, Steffen Ortmann, Amy T. Gilbert

United States Department of Agriculture Wildlife Services: Staff Publications

The small Indian mongoose (Herpestes auropunctatus) is a reservoir of rabies virus (RABV) in Puerto Rico and comprises over 70% of animal rabies cases reported annually. The control of RABV circulation in wildlife reservoirs is typically accomplished by a strategy of oral rabies vaccination (ORV). Currently no wildlife ORV program exists in Puerto Rico. Research into oral rabies vaccines and various bait types for mongooses has been conducted with promising results. Monitoring the success of ORV relies on estimating bait uptake by target species, which typically involves evaluating a change in RABV neutralizing antibodies (RVNA) post vaccination. This …