Terrestrial and Aquatic Ecology Commons^™

Spatial And Temporal Genetic Structure Of Winter-Run Steelhead (Oncorhynchus Mykiss) Returning To The Mad River, California, Steven R. Fong

Cal Poly Humboldt theses and projects

Distinct populations of steelhead in the wild are in decline. The propagation of steelhead in hatcheries has been used to boost population numbers for recreational fisheries and for use in conservation. However, hatchery breeding practices of steelhead can result in changes in genetic structure. I investigated the genetic structure of winter-run steelhead (Oncorhynchus mykiss) returning to the Mad River, California, where a hatchery has been used enhance production for recreational fisheries since 1971. Genetic variability in Mad River steelhead was evaluated using 96 single nucleotide polymorphisms (SNPs) among 4203 individuals, including the Mad River and nearby locations, and …

Gulf Coast Marine Laboratories Past, Present And Future, Donald F. Boesch

Gulf and Caribbean Research

I spent my nearly 50—year career in marine science working at marine laboratories, most of that as a chief executive officer. So, it is appropriate that my reflections are about marine laboratories, rather than my own science. After relating my career course, I turn my attention to the history and development of marine laboratories along the U.S. coast of the Gulf of Mexico (GOM). Surprisingly, the region’s first laboratory was actually constructed in 1903 at Cameron, LA, but operated less than a decade before closing. It was not until after World War II that the university—affiliated marine laboratories of today …

The Influence Of Location, Positioning, And Seasonality On Feeding Behavior Of The Sydney Oyster (Saccostrea Glomerata) In New South Wales, Australia, Nathaniel Hess

Independent Study Project (ISP) Collection

Oysters are hard shelled bivalves that aggregate over time to create structures in estuarine systems, known as oyster reefs. These reefs are important for the promotion of estuarine biodiversity by supporting many species of fish, invertebrates, and plants. They also act as a key contributor to water health by using active suspension feeding mechanisms and selective feeding to remove nutrients and water borne pollutants from estuarine systems. They have been touted as possible bio-remediators. They also effect rates of sedimentation in estuaries.

Oyster reefs have historically been threatened by anthropogenic influences such as overharvesting, destructive fishing practices, water pollution, CO2 …

A Delicate Balance: The Effects Of Habitat Type On Frog Communities: A Three-Pronged Study Examining The Effects Of Differing Habitat Characteristics On Anuran Diversity At El Centro De Investigación Sumak Kawsay In Situ, Ecuador, Zane Libke

Independent Study Project (ISP) Collection

We conducted 60 hours of visual encounter surveys and 3 hours of calling surveys on 6 different habitat types near Sumak Kawsay in situ Reserva (SKIS) near Mera, Pastaza, Ecuador. We defined habitat types defined by two variables: type of forest and proximity to water. The aim of the study was to determine what effect each variable has on anuran community composition. We compared the effectiveness of the two survey methods as well. High anuran community dissimilarity was found between each habitat type surveyed, indicating that both forest type and proximity to water are important factors that shape species richness …

Spatiotemporal Impact Of Snow On Underwater Photosynthetically Active Radiation In Taylor Valley, East Antarctica, Madeline E. Myers

LSU Master's Theses

The role of snow on underwater photosynthetically active radiation (UW PAR) in the McMurdo Dry Valleys (MDVs) has been understudied due to lack of a detailed snowfall record. Research has shown that a relationship between snow cover and UW PAR exists, but the extent has never been evaluated in great detail. Although annual snowfall values in the MDVs are low (3 to 50 mm water equivalent annually), trends of increasing snowfall on the continent under future warming conditions could lead to an increased role for snow in regulating UW PAR (and associated primary productivity). Here, I discuss evidence from the …

Amphibian And Reptile Community Responses To Forest And Riparian Disturbance, Jacquelyn Christine Guzy

Graduate Theses and Dissertations

Riparian zones are transitional, semi-terrestrial areas regularly influenced by freshwater. These areas serve as dispersal corridors for many animal and plant species and ultimately function as important reservoirs of biodiversity in altered landscapes. While much of the riparian habitat in the United States has been affected by anthropogenic activities, management actions may mitigate potentially negative influences of these activities. For example, Streamside Management Zones (i.e., riparian buffers; SMZs) are commonly implemented within managed forests to protect water quality, but may also provide habitat for riparian-associated wildlife. Yet, little research has rigorously addressed the value of SMZs for wildlife, particularly cryptic …

Cool And Warm Season Climate Signals In Tree Rings From North America, Max Carl Arne Torbenson

Graduate Theses and Dissertations

Earlywood (EW) and latewood (LW) ring-width chronologies have become an increasingly important proxy in paleoclimate reconstructions. These subannual variables can provide estimates of past hydroclimate variability for seasonal windows that total ring-widths cannot resolve. The strength of the relationship between EW and LW series may influence what type of paleoclimate information is embedded within the tree-ring series. High correlations (> 0.70) between EW and LW are recorded for much of the continent but the magnitude of correlation varies greatly across space and species boundaries. Using four LW chronologies from shortleaf pine, the North American conifer species displaying the lowest EW-LW …

A Long-Term (2002 To 2017) Record Of Closed-Path And Open-Path Eddy Covariance Co2 Net Ecosystem Exchange Fluxes From The Siberian Arctic, David Holl, Christian Wille, Torsten Sachs, Peter Schreiber, Benjamin R. K. Runkle, Lutz Beckebanze, Moritz Langer, Julia Boike, Eva-Maria Pfeiffer, Irina Fedorova, Dimitry Y. Bolshianov, Mikhail N. Grigoriev, Lars Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

Ground-based observations of land–atmosphere fluxes are necessary to progressively improve global climate models. Observed data can be used for model evaluation and to develop or tune process models. In arctic permafrost regions, climate–carbon feedbacks are amplified. Therefore, increased efforts to better represent these regions in global climate models have been made in recent years. We present a multi-annual time series of land–atmosphere carbon dioxide fluxes measured in situ with the eddy covariance technique in the Siberian Arctic (72◦220 N, 126◦300 E). The site is part of the international network of eddy covariance flux observation stations (FLUXNET; site ID: Ru-Sam). The …

Habitat Usage Patterns Of Bottlenose Dolphins (Tursiops Truncatus) In Terrebonne And Timbalier Bays, Louisiana, Mary Allison Manning

LSU Master's Theses

I coupled fine-scale environmental data with observed behavior and group composition data to examine overall distribution within the bay system and to characterize the habitat associated with foraging and the presence of calves. Semi-isolated populations of bottlenose dolphins (Tursiops truncatus) along Louisiana’s coast are undergoing increased risks from boat traffic, oil spills, land subsidence, and planned water diversions (CPRA 2017). Characterizing the habitat use of bottlenose dolphins in Terrebonne and Timbalier bays, Louisiana, is important given the likely high site fidelity, small home ranges, and low exchange of individuals with nearby coastal populations (Lane et al. 2015, McDonald …

Evaluation Of An Educational Campaign To Improve The Conscious Consumption Of Recreationally Caught Fish, Corey A. Krabbenhoft, Susan Manente, Donna R. Kashian

Environmental Science and Geology Faculty Research Publications

Consumption guidelines are a common way of improving conscious consumption behaviors in areas where game fish are known to contain contaminants. However, guideline information can be difficult to distribute, and effectiveness difficult to measure. To increase the distribution and effectiveness of guideline information for the Detroit River, an educational campaign was launched in 2010, which included distribution of pamphlets with consumption information, posting of permanent signs at popular fishing locations, and hiring River Walkers to personally communicate with anglers. In 2013 and 2015, we conducted in-person surveys of active shoreline anglers to determine the effectiveness of education and outreach efforts. …

Habitat Preferences Of Blue Marlin (Makaira Nigricans) And Black Marlin (Istiompax Indica) In The Eastern Pacific Ocean, Nima Farchadi, Michael G. Hinton, Andrew R. Thompson, Zhi-Yong Yin

Theses

Overexploitation and climate change can reduce the abundance and shift the spatial distribution of marine species. Determining the habitat suitability of a mobile pelagic species, such as Makaira nigricans (BUM) and Istiompax indica (BLM), can help describe their spatiotemporal distribution patterns over a broad spatial scale, which is a crucial need for fisheries management. Using 14 years (1997-2010) of Inter-American Tropical Tuna Commission (IATTC) catch data from purse-seine vessels in the eastern Pacific Ocean (EPO), we modeled the dynamic habitat suitability of BUM and BLM in response to environmental variables within the EPO using a species distribution model (MaxEnt) with …

Does Environment Filtering Or Seed Limitation Determine Post-Fire Forest Recovery Patterns In Boreal Larch Forests?, Wen H. Cai, Zhihua Liu, Yuan Z. Yang, Jian Yang

Forestry and Natural Resources Faculty Publications

Wildfire is a primary natural disturbance in boreal forests, and post-fire vegetation recovery rate influences carbon, water, and energy exchange between the land and atmosphere in the region. Seed availability and environmental filtering are two important determinants in regulating post-fire vegetation recovery in boreal forests. Quantifying how these determinants change over time is helpful for understanding post-fire forest successional trajectory. Time series of remote sensing data offer considerable potential in monitoring the trajectory of post-fire vegetation recovery dynamics beyond current field surveys about structural attributes, which generally lack a temporal perspective across large burned areas. We used a time series …

Bubble Stream Production By Belugas (Delphinapterus Leucas), Megan Slack

Theses

Bubble stream production in belugas has been poorly characterized and its function is not well understood. I examined behavioral states when producing bubble streams (“bubbling”), and when bubbling calls, to determine whether bubbling was significantly associated with a particular call category or behavioral state. Using 19 hours of video and audio recordings collected over a two-day period, I quantified bubble streams of a 4-month old calf and an unrelated adult female housed together. Based on the overall activity budgets and pool of vocalizations for both animals, I calculated the expected counts of bubble streams with and without vocalizations, assuming that …

Functions Of Ecosystems: Stream Metabolism As An Efficient And Effective Means To Gage The Health And Understand The Interworking Of Urban Streams In A Watershed Of Rock Island, Il, Ryan Johnson, Dr. Kevin Geedey

Celebration of Learning

Stream metabolism is a critical functional measure of stream health that integrates physical parameters like slope and discharge, with ecosystem functions like photosynthesis and respiration. Stream metabolism is widely studied; however, urban stream metabolism remains poorly understood. Stream metabolism was measured for five streams ranging from 1^st to 5^th orders from October 11^th to October 18^th 2017 and four streams ranging from 1^st to 4^th order from October 22^nd to 25^th 2017 located within an approximately 9.3 square kilometer watershed of Rock Island, IL that has an urban to suburban type of …

Cyanobacteria Reduce Quagga Mussel (Dreissena Rostriformis Bugensis) Spawning And Fertilization Success, Anna G. Boegehold, Nicholas S. Johnson, Jeffrey L. Ram, Donna R. Kashian

Environmental Science and Geology Faculty Research Publications

Quagga mussels (Dreissena rostriformis bugensis) are highly fecund broadcast spawners invasive to freshwaters of North America and western Europe. We hypothesized that environmental cues from phytoplankton can trigger gamete release in quagga mussels. Nutritious algae may stimulate dreissenid spawning, but less palatable food, such as bloom-forming cyanobacteria, could be a hindrance. The objective of our study was to test whether exposure to cyanobacteria can inhibit quagga mussel spawning and fertilization. We assessed spawning in the presence of serotonin, a known spawning inducer, where adult quagga mussels placed in individual vials were exposed to 13 cyanobacteria cultures and purified algal toxin …

Population Dynamics Of The Threatened Staghorn Coral, Acropora Cervicornis, And The Development Of A Species-Specific Monitoring Protocol, Elizabeth Goergen

HCNSO Student Theses and Dissertations

Historically, Acropora cervicornis was found in high densities on many Caribbean, Florida, and Gulf of Mexico reefs. A disease outbreak in the late 1970s and 80s caused up to 99% loss of A. cervicornis cover at some sites, leaving populations sparsely distributed throughout its range and typically found as isolated colonies. Even though populations are depauperate causing a decrease in sexual reproduction, its fast growth rate and ability to reproduce through asexual fragmentation affords this species the potential for quick recovery and population growth. However, limited to no natural recovery has been documented. Many of these populations are poorly studied …

The Relationship Between Measures Of Annual Livestock Disturbance In Western Riparian Areas And Stream Conditions Important To Trout, Salmon, And Char, Lindsey M. Goss, Brett B. Roper

Watershed Sciences Faculty Publications

Managing livestock disturbance in riparian zones in a manner that provides economic returns to ranchers while protecting streams is an important aspect of rangeland management on public lands in the western United States. Attempts to balance economic and ecologic outcomes have been made more difficult due to the presence of several salmonid species that are protected under the Endangered Species Act. One approach to proper management of livestock use near streams has been to define the allowable limits of disturbance using 2 metrics, streambank alteration and stubble height. We evaluated 153 stream reaches within the Interior Columbia Basin to determine …

Advancing The Understanding Of Environmental Transformations, Bioavailability And Effects Of Nanomaterials, An International Us Environmental Protection Agency—Uk Environmental Nanoscience Initiative Joint Program, Mitch M. Lasat, Kian Fan Chung, Jamie Lead, Steve Mcgrath, Richard J. Owen, Sophie Rocks, Jason M. Unrine, Junfeng Zhang

Plant and Soil Sciences Faculty Publications

Nanotechnology has significant economic, health, and environmental benefits, including renewable energy and innovative environmental solutions. Manufactured nanoparticles have been incorporated into new materials and products because of their novel or enhanced properties. These very same properties also have prompted concerns about the potential environmental and human health hazard and risk posed by the manufactured nanomaterials. Appropriate risk management responses require the development of models capable of predicting the environmental and human health effects of the nanomaterials. Development of predictive models has been hampered by a lack of information concerning the environmental fate, behavior and effects of manufactured nanoparticles. The United …

Influence Of Black Mangrove Expansion On Salt Marsh Faunal Communities Of Eastern Coastal Louisiana, Christina Powell

LSU Master's Theses

The salt marshes along the Gulf of Mexico provide a critical habitat for many species, but their spatial distribution is changing, because Avicennia germinans (black mangroves) are expanding due to warmer winters. Currently, little is known about how A. germinans are used as habitat providing food and refuge for aquatic fauna. Therefore, the overall goal of this study was to determine how A.germinans expansion into the Spartina alterniflora (smooth cordgrass) marshes of Louisiana’s Mississippi River delta plain affects salt marsh-dependent organisms. This study analyzed three habitat types: Spartina-dominated, Avicennia-dominated, and a mix of the two, focusing on habitat use and …

Persistence Of Stream Restoration With Large Wood, Redwood National And State Parks, California, Diedra L. Rodriguez

Cal Poly Humboldt theses and projects

The conservation and recovery of anadromous salmonids (Oncorhynchus sp.) depend on stream restoration and protection of freshwater habitats. In-stream large wood dictates channel morphology, increases retention of terrestrial inputs such as organic matter, nutrients and sediment, and enhances the quality of fish habitat. Historic land use/land cover changes have resulted in aquatic systems devoid of large wood. Restoration by placement of large wood jams is intended to restore physical and biological processes. An important question for scientists and restoration managers, in addition to the initial effectiveness of restoration, is the persistence and fate of large wood installations. In this …

Impact Of Temperature Increase On Freshwater Fish Species: Energetics And Muscle Mechanics Of Two Centrarchids, Israt Jahan

Masters Theses

Fishes have evolved physiologically to live within a specific range of environmental variation and existence outside of that range can be stressful or fatal. These ranges can coincide for fishes that evolved in similar habitats. This study investigates physiological processes limiting thermal tolerance, specifically how changes in water temperature affect the swimming energetics and muscle mechanics in largemouth bass (Micropterus salmoides) and bluegill (Lepomis macrochirus). I focused on the impact of temperature change at the muscle level in these two species and the capacity to adapt to rapid changes in the environment. Fish were housed at …

Evaluation Of Cadmium Bioaccumulaiton Of Periphyton And Aquatic Invertebrates Within Tributaries Of The Buffalo National River, Jacob Rollins Mccauley

Student Theses and Dissertations

The Rush Mining District, located along the Buffalo River in Arkansas, has a significant history of metal-mining operations. The tails and spoils of these operations deposit heavy amounts of raw ore into streams, including the deposition of cadmium, a minor constituent. Periphyton and invertebrate samples from two creeks within the Rush Mining District were measured for cadmium. Additionally, two creeks with no history of mining were sampled. Periphyton samples from mining sites had significantly higher concentrations of cadmium than samples collected at control sites. Invertebrate samples were classified into trophic levels before analysis. Invertebrate samples collected at treatment sites only …

Forecasting The Spread And Invasive Potential Of Apple Snails (Pomacea Spp.) In Florida, Stephanie A. Reilly

HCNSO Student Theses and Dissertations

Forecasting the potential range of invasive species is a critical component for risk assessment, monitoring, and management. However, many of these invasive species are not yet at equilibrium which can be problematic for many modelling approaches. Using the climate matching method, MaxEnt, a series of species distribution models (SDMs) and risk analysis maps were created for select apple snail species in Florida: Pomacea canaliculata, P. diffusa, and P. maculata. Apple snails, freshwater gastropods in the family Ampullariidae, are native to South America and were introduced to the United States via the pet trade approximately 40 years ago. …

No Evidence For Trace Metal Limitation On Anaerobic Carbon Mineralization In Three Peatland Soils, Jason K. Keller, Jillian Wade

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Peatlands store roughly one-third of the terrestrial soil carbon and release the potent greenhouse gas methane (CH₄) to the atmosphere, making these wetlands among the most important ecosystems in the global carbon cycle. Despite their importance, the controls of anaerobic decomposition of organic matter to carbon dioxide (CO₂) and CH₄ within peatlands are not well understood. It is known, however, that the enzymes responsible for CH₄ production require cobalt, iron and nickel, and there is a growing appreciation for the potential role of trace metal limitation in anaerobic decomposition. To explore the possibility of …

Counting Crabs: Assessment Of Mangrove Crab Diversity And Density Among Three Sites In Ushongo, Tanzania, Clarasophia Gust

Independent Study Project (ISP) Collection

This study assessed the density and diversity of crabs across three mangrove forest zones in Ushongo, Tanzania. The aim was to understand variance in the composition and distribution of mangrove crabs in relation to mangrove tree composition gradients in the area. Sites were measured using a 200m line transect and 40-plot method. Data was also collected from a sand beach habitat to compare to the diversity and distribution of mangrove habitats. Diversity was analyzed using Simpson’s Index of Diversity and an ANOVA test on the average number of species found per plot in each site. Density was analyzed using an …

Variability In Methane Emissions From West Siberia's Shallow Boreal Lakes On A Regional Scale And Its Environmental Controls, Aleksandr F. Sabrekov, Benjamin R.K. Runkle, Mikhail V. Glagolev, Irina E. Terentieva, Victor M. Stephanenko, Oleg R. Kotsyurbenko, Shamil S. Maksyutov, Oleg S. Pokrovsky

Biological and Agricultural Engineering Faculty Publications and Presentations

Small lakes represent an important source of atmospheric CH4 from northern wetlands. However, spatiotemporal variations in flux magnitudes and the lack of knowledge about their main environmental controls contribute large uncertainty into the global CH4 budget. In this study, we measured methane fluxes from small lakes using chambers and bubble traps. Field investigations were carried out in July–August 2014 within the West Siberian middle and southern taiga zones. The average and median of measured methane chamber fluxes were 0.32 and 0.30 mgCH4 m−2 h−1 for middle taiga lakes and 8.6 and 4.1 mgCH4 m−2 h−1 for southern taiga lakes, respectively. …

Environmentally-Driven Variation In The Population Dynamics Of Gulf Menhaden (Brevoortia Patronus), Grant D. Adams

Master's Theses

Gulf Menhaden (Brevoortia patronus) is an abundant forage fish distributed throughout the Northern Gulf of Mexico (NGOM). Gulf Menhaden support the second largest fishery, by weight, in the United States and represent a key linkage between upper and lower trophic levels. Variation in the population dynamics can, therefore, pose consequences for the ecology and economy in the NGOM. Here we aim to understand variation in the individual and population dynamics of Gulf Menhaden throughout ontogeny and how such variation relates to environmental processes. We utilized a suite of fishery-dependent and –independent, remote sensing, modeled, and in situ data …

Synergistic Use Of Remote Sensing And Modeling To Assess An Anomalously High Chlorophyll-A Event During Summer 2015 In The South Central Red Sea, Wenzhao Li, Hesham El-Askary, K. P. Manikandan, Mohamed A. Qurban, Michael J. Garay, Olga V. Kalishnikova

Mathematics, Physics, and Computer Science Faculty Articles and Research

An anomalously high chlorophyll-a (Chl-a) event (>2 mg/m3) during June 2015 in the South Central Red Sea (17.5° to 22°N, 37° to 42°E) was observed using Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellite platforms. This differs from the low Chl-a values (<0.5 mg/m3) usually encountered over the same region during summertime. To assess this anomaly and possible causes, we used a wide range of oceanographical and meteorological datasets, including Chl-a concentrations, sea surface temperature (SST), sea surface height (SSH), mixed layer depth (MLD), ocean current velocity and aerosol optical depth (AOD) obtained from different sensors and models. Findings confirmed this anomalous behavior in the spatial domain using Hovmöller data analysis techniques, while a time series analysis addressed monthly and daily variability. Our analysis suggests that a combination of factors controlling nutrient supply contributed to the anomalous phytoplankton growth. These factors include horizontal transfer of upwelling water through eddy circulation and possible mineral fertilization from atmospheric dust deposition. Coral reefs might have provided extra nutrient supply, yet this is out of the scope of our analysis. We thought that dust deposition from a coastal dust jet event in late June, coinciding with the phytoplankton blooms in the area under investigation, might have also contributed as shown by our AOD findings. However, a lag cross correlation showed a two- month lag between strong dust outbreak and the high Chl-a anomaly. The high Chl-a concentration at the edge of the eddy emphasizes the importance of horizontal advection in fertilizing oligotrophic (nutrient poor) Red Sea waters.

Effects Of Climate Warming On Net Primary Productivity In China During 1961–2010, Fengxue Gu, Yuandong Zhang, Mei Huang, Bo Tao, Rui Guo, Changrong Yan

Plant and Soil Sciences Faculty Publications

The response of ecosystems to different magnitudes of climate warming and corresponding precipitation changes during the last few decades may provide an important reference for predicting the magnitude and trajectory of net primary productivity (NPP) in the future. In this study, a process-based ecosystem model, Carbon Exchange between Vegetation, Soil and Atmosphere (CEVSA), was used to investigate the response of NPP to warming at both national and subregional scales during 1961–2010. The results suggest that a 1.3°C increase in temperature stimulated the positive changing trend in NPP at national scale during the past 50 years. Regardless of the magnitude of …

Strategies For Environmental Education For Youths And Adults, Chumbe Island Coral Park, Zanzibar, Samantha Pfeffer

Independent Study Project (ISP) Collection

Chumbe Island Coral Park (CHICOP) is a privately-owned business that strives to follow the best principles of ecotourism, conservation, and environmental education. Their environmental education initiative is award-winning and has affected thousands of students and community members in Zanzibar. This study looked at the environmental education techniques that CHICOP already has in place by observing two pre-visits, three island-visits and one-post visit, and determined where there was a need for enhanced and new techniques for teaching about the environment. Evidence of climate change on Chumbe Island was also recorded to aid in the educational tools and to create a database …