Terrestrial and Aquatic Ecology Commons^™

Spatial And Temporal Genetic Structure Of Winter-Run Steelhead (Oncorhynchus Mykiss) Returning To The Mad River, California, Steven R. Fong

Cal Poly Humboldt theses and projects

Distinct populations of steelhead in the wild are in decline. The propagation of steelhead in hatcheries has been used to boost population numbers for recreational fisheries and for use in conservation. However, hatchery breeding practices of steelhead can result in changes in genetic structure. I investigated the genetic structure of winter-run steelhead (Oncorhynchus mykiss) returning to the Mad River, California, where a hatchery has been used enhance production for recreational fisheries since 1971. Genetic variability in Mad River steelhead was evaluated using 96 single nucleotide polymorphisms (SNPs) among 4203 individuals, including the Mad River and nearby locations, and …

Protecting Biodiversity On National Forests: The Evolution And Implementation Of Forest Planning Regulations, Anna Wearn

Graduate Student Theses, Dissertations, & Professional Papers

In 2012, the U.S. Forest Service (USFS) promulgated new forest planning regulations that significantly altered national forest management. One of the most controversial and important advancements was the inclusion of what were meant to be stronger biodiversity protections. An analysis of USFS’s rationale in revising the biodiversity regulations provides insights into how to interpret the substantively and procedurally new ecosystem and species protections. Examining this regulatory history reveals three key changes to the manner in which national forests are required to manage and monitor biodiversity: 1) a greater reliance on science to inform planning, 2) a new emphasis on ecological …

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Stone-Stacking As A Looming Threat To Rock-Dwelling Biodiversity, Ricardo Rocha, Paulo A. V. Borges, Pedro Cardoso, Mirza Dikari Kusrini, José Luis Martín-Esquivel, Dília Menezes, Mário Mota-Ferreira, Sara F. Nunes, Inês Órfão, Catarina Serra-Gonçalves, Manuela Sim-Sim, Pedro Sepúlveda, Dinarte Teixeira, Anna Traveset

Human–Wildlife Interactions

This letter to the editor describes the surge of “photo-friendly” stacks of stones as an emerging tourism-associated threat to rock-dwelling biodiversity.

Just Preservation, Trusteeship And Multispecies Justice, Francisco J. Santiago-Ávila, Adrian Treves, William Lynn

Animal Sentience

We are grateful to all the commentators who engaged with our target article. Some commentators have offered important insights into our proposed design and methods for legally intervening on behalf of futurity. Others have focused on theoretical considerations central to our proposal for multispecies justice and trusteeship. All have inspired modifications and further elaboration of our initial proposal. In this Response, we engage with the commentaries, integrating their suggestions, striving for convergence and complementarity, but also discussing points of divergence with our proposed framework where necessary. There is substantial overlap in the points of view of the three co-authors, but …

Energy Development And Production In The Great Plains: Implications And Mitigation Opportunities, Jacqueline P. Ott, Bruce B. Hanberry, Mona Khalil, Mark W. Paschke, Max Post Van Der Burg, A.J. Prenni

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Energy is an integral part of society. The major US energy sources of fossil fuels (coal, oil, natural gas); biofuels (ethanol); and wind are concentrated in grassland ecosystems of the Great Plains. As energy de- mand continues to increase, mounting pressures will be placed on North American grassland systems. In this review, we present the ecological effects of energy development and production on grassland sys- tems. We then identify opportunities to mitigate these effects during the planning, construction, and pro- duction phases by using informed methodology and improved technology. Primary effects during energy development include small- and large-scale soil disturbance …

Temporospatial Shifts In Sandhill Crane Staging In The Central Platte River Valley In Response To Climatic Variation And Habitat Change, Andrew J. Caven, Emma M. Brinley Buckley, Kelsey C. King, Joshua Wiese, David M. Baasch, Greg D. Wright, Mary Harner, Aaron T. Pearse, Matt Raabe, Dana Varner, Brice Krohn, Nicole Arcilla, Kirk D. Schroeder, Kenneth F. Dinan

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Over 80% of the Mid-Continent Sandhill Crane (Antigone canadensis) Population (MCP), estimated at over 660,000 individuals, stops in the Central Platte River Valley (CPRV) during spring migration from mid-February through mid-April. Research suggests that the MCP may be shifting its distribution spatially and temporally within the CPRV. From 2002 to 2017, we conducted weekly aerial surveys of Sandhill Cranes staging in the CPRV to examine temporal and spatial trends in their abundance and distribution. Then, we used winter temperature and drought severity measures from key wintering and early migratory stopover locations to assess the impacts of weather patterns …

Watching Grass Grow: How Soil Moisture Affects Vesicular-Arbuscular Mycorrhizae And Growth In Little Bluestem, Laura M. Jones

Honors Scholar Theses

Vesicular-arbuscular mycorrhizae (VAM) are an ancient mutualism in which soil-dwelling fungi enhance plant absorption of phosphorus and nitrogen in exchange for photosynthates. VAM are sensitive to changes in soil moisture and nutrient content, fluctuating between mutualism and parasitism depending on conditions of drought stress and nutrient deficiency. Understanding how VAM respond to precipitation changes is crucial for both conservation and agricultural purposes. To test how soil moisture changes the effects of VAM colonization and growth in little bluestem (Schizachyrium scoparium), a common prairie grass, I planted 300 seeds in a greenhouse in sterilized soil and soil inoculated with …

Mammal Species Inventory Using Various Trapping Methods In Zone 4 Of Billy Barquedier National Park, Belize During Rainy Season, Mersady Redding

Animal Science Undergraduate Honors Theses

Belize is a small country, but it is extremely ecologically diverse. Based on the few studies conducted in Belize, the abundance of mammals is low but diversity is high. Particular findings note the number and identity of species differed between four sites in the Maya Mountains of Belize, indicating that a data set from a single site is not representative of the Neotropical region. Insufficient data is available to estimate current species richness of many areas in Belize, including Billy Barquedier National Park (BBNP). The objective of this study was to explore trapping and documentation methods of terrestrial mammals in …

Species Richness And Ecological Diversity Of Myxomycetes And Myxomycete-Like Organisms In The Tropical Forests Of Brazil, Isadora Lima Coelho

Graduate Theses and Dissertations

Tropical rain forests cover less than two percent of Earth's surface, yet they sustain the greatest diversity of living organisms on the planet. Tropical rain forests cover nearly 73% of the Brazilian territory and besides harboring some of the most biodiverse ecosystems on the planet, this vast area also houses about 83% of the Brazilian population. Approximately 175 million people live in urban and rural areas with fragments of coverage of these biomes which contributes to the loss of biodiversity that rapidly increases over the years. Furthermore, the majority of the taxonomic and ecological efforts to describe and protect the …

Predictors Of Bat Species Richness Within The Islands Of The Caribbean Basin, Justin D. Hoffman, Gabrielle Kadlubar, Scott C. Pedersen, Roxanne J. Larsen, Peter A. Larsen, Carleton J. Phillips, Gary G. Kwiecinski, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

Several mechanisms have been shown to influence species richness among island ecosystems, yet most studies limit their focus to a few predictor variables. The objective of this study is to investigate variation in Chiropteran richness across islands in the Caribbean Basin with an extensive set of predictor variables. Using recent faunal surveys, the most contemporary list of bat species per island was complied. Data were collected on 17 predictor variables, which summarized five general island characteristics including island area, isolation, habitat diversity, human impact, and climate. An information-theoretic approach was used by fitting alternative candidate models to determine which variable(s) …

Overture [From Field To Laboratory: A Memorial Volume In Honor Of Robert J. Baker], Robert D. Bradley, David J. Schmidly, Hugh H. Genoways, Lisa C. Bradley

University of Nebraska State Museum: Mammalogy Papers

Introduction to the memorial volume of Special Publications / Museum of Texas Tech University in honor of Robert J. Baker.

First paragraph:

Herein, we use the word “Overture” not in its first meaning, but rather in its second—“An introduction to something more substantial” ([Def. 2], Oxford Dictionaries, Oxford University Press 2018). In our current case, this is the overture to a memorial volume in honor of our friend and colleague Robert J. Baker. Here, his former students and colleagues have taken time and effort to write 43 essays and scientific articles and 54 personal encomia in demonstration of their …

A Scientometric Appreciation Of Robert J. Baker's Contributions To Science And Mammalogy, David J. Schmidly, Robert D. Bradley, Emma K. Roberts, Lisa C. Bradley, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

This article describes Robert James Baker’s academic pedigree and genealogy, his scientific productivity (number of publications), his citations, his students, his contributions to his university and scientific societies, his personality in relation to his scientific achievements, his legacy, and a personal note of appreciation by individuals who worked with him and knew him well. His accomplishments are compared with other dominant personalities in the field of mammalogy, both historical and contemporary. The paper builds on the 2018 obituary authored by Hugh Genoways and others that was published in the Journal of Mammalogy, but includes a much more quantitative and …

The Neotropical Variegated Squirrel, Sciurus Variegatoides (Rodentia: Sciuridae) In Nicaragua, With The Description Of A New Subspecies, Hugh H. Genoways, Robert M. Timm

University of Nebraska State Museum: Mammalogy Papers

The Neotropical variegated squirrel, Sciurus variegatoides, is represented in Nicaragua by five known subspecies—adolphei, belti, boothiae, dorsalis, and underwoodi. Analyses of morphometrics, color, and color patterns of 394 specimens from throughout the country and all available literature support the retention of these subspecies, but also reveal the presence of a sixth population of these squirrels, which is worthy of description and recognition as a new subspecies. This new subspecies is confined to Isla de Ometepe in Lago de Nicaragua. Variegated squirrels on Ometepe are on average the smallest variegated squirrels in the country …

Rose-Ringed Parakeets, Page E. Klug, William P. Bukoski, Aaron B. Shiels, Bryan M. Kluever, Shane R. Siers

Wildlife Damage Management Technical Series

Rose-ringed parakeets (Psittacula krameri; hereafter RRPA; Figure 1) are an invasive species in the United States, present in Alabama, Louisiana, Texas, and Virginia, and with established populations in California, Florida, and Hawaii. They are also the most successful species of invasive parakeet, worldwide. RRPA can cause significant damage to agriculture, including grains, oilseeds, fruits, and ornamental plants. Large flocks of RRPA roost near human infrastructure resulting in concerns about human health and safety (e.g., collisions with aircraft, disease transmission, feces accumulation, and noise complaints). The population growth and spread of RRPA is of conservation concern given the potential impact on …

Reorganization Of Surviving Mammal Communities After The End-Pleistocene Megafaunal Extinction, Anikó B. Tóth, S. Kathleen Lyons, W. Andrew Barr, Anna K. Behrensmeyer, Jessica L. Blois, René Bobe, Matt Davis, Andrew Du, Jussi T. Eronen, J. Tyler Faith, Danielle Fraser, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Joshua H. Miller, Silvia Pineda-Munoz, Laura C. Soul, Amelia Villaseñor, John Alroy

School of Biological Sciences: Faculty Publications

Large mammals are at high risk of extinction globally. To understand the consequences of their demise for community assembly, we tracked community structure through the end- Pleistocene megafaunal extinction in North America.We decomposed the effects of biotic and abiotic factors by analyzing co-occurrence within the mutual ranges of species pairs. Although shifting climate drove an increase in niche overlap, co-occurrence decreased, signaling shifts in biotic interactions. Furthermore, the effect of abiotic factors on cooccurrence remained constant over time while the effect of biotic factors decreased. Biotic factors apparently played a key role in continental-scale community assembly before the extinctions. Specifically, …

Information Resources For Animal Control And Wildlife Damage Management, Stephen M. Vantassel, Michael W. Fall, Serge Lariviére

Wildlife Damage Management Technical Series

A bumper sticker reads, “If you think education is expensive, you oughta try ignorance.” That statement could not be truer in regard to wildlife damage management. Being willing to learn is a critical attitude for everyone involved in wildlife damage management. Since wildlife damage management intersects so many other disciplines, no single person can be an expert in all of them. In addition, the arrival of an invasive species, changes in building practices (e.g., egress windows, ridge vents), or the implementation of new regulations can confound traditional practices and require new control methods. Thus, it is important to provide a …

Using Single-Cell Sorting, Fish And 13c-Labeling To Cultivate And Assess Carbon Substrate Utilization Of ‘Aigarchaeota’ And Other Novel Thermophiles, Damon Kurtis Mosier

Electronic Theses, Projects, and Dissertations

‘Aigarchaeota’, a deeply branching lineage in the domain Archaea with no cultivated representatives, includes both thermophilic and hyperthermophilic microorganisms that reside in terrestrial and marine geothermal environments. The ‘Aigarchaeota’ consists of at least nine proposed genus-level groups that have been confirmed via 16S rRNA sequencing, with ‘Aigarchaeota’ Group 1 (AigG1) being the focus of this study. Based on cultivation-independent genomic data available from several AigG1 members in Great Boiling Spring (GBS), NV, and Yellowstone National Park, 22 different types of growth media were designed and tested for their ability to support growth of AigG1. One of these cultures, G1-10, was …

Effect Of Beaver On Brook Trout Habitat In North Shore, Lake Superior Streams, Kathryn Renik

Biology Graduate Theses

In Minnesota, North American Beavers Castor canadensis (hereafter Beaver) are considered to have an overall negative affect on native Brook Trout Salvelinus fontinalis. Brook Trout provide a valued and productive sport fishery to the North Shore streams of Lake Superior and since revival of the Beaver population from past trapping and timber harvest, a reexamination of the complex ecological relationship where the two taxa interact is imperative. Suitable Brook Trout habitat is characterized by cold, spring- fed water with silt-free rocky substrate and abundant cover, all of which Beaver may directly, or indirectly, affect. Data collection occurred on 79 (200 …

The Value Of Inspection Stations For Detecting Nonindigenous Species Lacking Agricultural Significance: The Mexican Treefrog, Smilisca Baudinii Complex (Duméril And Bibron 1841) (Hylidae), Interdicted In Florida, Usa, From A Shipment Of Peppers, Louis A. Somma

Papers in Herpetology

A Mexican Treefrog, Smilisca baudinii, a nonindigenous species, was interdicted for the first time from an imported shipment of peppers. The value of agriculture inspection stations used to make these interdictions is discussed. This is a single cargo interception (Stage 1: Colautti and MacIsaac 2004) and the first record for S. baudinii intercepted in Florida. Currently no evidence suggests that S. baudinii has been successfully introduced into and established in Florida, although this species could survive climatic conditions in the southern part of the state and at the scheduled destination of this shipment.

Cargo transport of alien species is a …

A Tentative List Of The Land Snails Of Georgia, U.S.A., Zachary I. Felix, Michael A. Dubuc, Hassan A. Rana

Georgia Journal of Science

Because of their high ecological and conservation value, and because we know so little about the group, we compiled a systematic if tentative list of land snails from the state of Georgia. After gleaning a list of species from a monograph on the land snails of eastern United States, written by Leslie Hubricht in 1985, we realized that many species whose ecological requirements are found in Georgia had not been documented there. Therefore, we developed a qualitative model to predict the likelihood that these candidate species occur in Georgia and would eventually be documented. We tested the model with collections …

The Multifaceted Effects Induced By Floods On The Macroinvertebrate Communities Inhabiting A Sinking Cave Stream, Octavian Pacioglu, Nicoleta Ianovici, Mărioara N. Filimon, Adrian Sinitean, Gabriel Iacob, Henrietta Barabas, Alexandru Pahomi, Andrei Acs, Hanelore Muntean, Lucian Pârvulescu

International Journal of Speleology

First-order sinking cave streams experience considerable hydrological variability, including spates and periods of base-flow during dry seasons. Early-summer flooding on a first-order stream sinking in Ciur-Ponor Cave (Romania) represented a suitable opportunity to test the response of the macroinvertebrate community and of basal food resources quantity and diversity to such a disturbance event. The invertebrate community and basal resources (i.e., woody debris, leaves, fine particulate organic matter and epilithon) were collected from three sampling sites, before and after the flood. The sampling strategy followed an up-downstream gradient of both species diversity and quantity of allochtonous organic matter decrease as the …

Species-Area Model Predicting Diversity Loss In An Artificially Flooded Cave In Brazil, Rodrigo L. Ferreira, Thais G. Pellegrini

International Journal of Speleology

Subterranean environments are poorly known regarding many ecological aspects, such as community structure and its response to different disturbances. To estimate the effects of ground area lost in a limestone cave community in Southeastern Brazil, the invertebrate fauna was sampled before 76% of the cave floor was submerged by the filling of a hydroeletric power plant reservoir. Then, a 2-year monitoring was conducted. A species-area curve based on empiric data was constructed and the z-value of the species-area equation was calculated, what allowed estimating the expected cave richness after flooding comparing with data obtained during the monitoring. The results support …

Hawk On Wire: Ecopoems By Scott T. Starbuck, Vivian M. Hansen

The Goose

Review of Scott T. Starbuck’s Hawk on Wire: Ecopoems

Estimating Offsets For Avian Displacement Effects Of Anthropogenic Impacts, Jiill A. Shaffer, Charles R. Loesch, Deborah A. Buhl

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Biodiversity offsetting, or compensatory mitigation, is increasingly being used in temperate grassland ecosystems to compensate for unavoidable environmental damage from anthropogenic developments such as transportation infrastructure, urbanization, and energy development. Pursuit of energy independence in the United States will expand domestic energy production. Concurrent with this increased growth is increased disruption to wildlife habitats, including avian displacement from suitable breeding habitat. Recent studies at energy-extraction and energy-generation facilities have provided evidence for behavioral avoidance and thus reduced use of habitat by breeding waterfowl and grassland birds in the vicinity of energy infrastructure. To quantify and compensate for this loss in …

Culture-Based Analysis Of ‘Cave Silver’ Biofilms On Rocks In The Former Homestake Mine In South Dakota, Usa, Amanpreet K. Brar, David Bergmann

International Journal of Speleology

Tunnels in a warm, humid area of the 1478 m level of the Sanford Underground Research Facility (SURF), located in a former gold mine in South Dakota, USA, host irregular, thin whitish, iridescent biofilms, which appear superficially similar to ‘cave silver’ biofilms described from limestone and lava tube caves, despite the higher rock temperature (32°C) and differing rock surface (phyllite) present at SURF. In this study, we investigated the diversity of cultivable bacteria constituting the cave silver by using several media: CN agar, CN gellan gum and 0.1X R2A agar. The highest colony count (CFU/g of sample) was observed on …

Vertical Connectivity Influences Secondary Production, Community Diversity, And Resilience In An Ozark Stream, Nathan C. Dorff

Graduate Theses/Dissertations

The hyporheic zone, a key component of stream vertical connectivity, supports stream function (e.g., nutrient regeneration) and provides habitat for aquatic biota. The Ozark Highlands ecoregion contains gravel-bed streams that have extensive hyporheic zones and that are subject to recurrent flash floods. I sampled Leuctra tenuis(Pictet) nymphs from the hyporheic habitat (30-45 cm below the streambed) in a gravel-bed reach and an intermittent tributary of an Ozark stream from early instar to adult emergence. Concurrently, I sampled benthic insects in two reaches of the same stream that differed primarily in amount of hyporheic habitat (bedrock vs. gravel) and monitored …

Assessing Populations Of Eastern Brook Trout (Salvelinus Fontinalis) Above And Below Waterfalls In Mountain Streams Of Virginia, Hannah Eisemann Macmillan

Masters Theses, 2010-2019

Anthropogenically driven factors, such as increasing temperature and sediment in valley streams, acidification of mountain streams, and the introduction of non-native trout, are restricting habitat suitable for healthy populations of eastern brook trout (Salvelinus fontinalis) throughout their native Appalachian range. Brook trout are important as predators of insects in mountain streams and as a favorite of anglers. It is crucial that remaining populations in sustainable habitats be identified and preserved. Waterfalls are geologic knickpoints preventing base-level lowering that create unique, stable landscapes above them, which may alleviate the temperature-productivity/acidity “habitat squeeze” for populations of brook trout and could …

Deicing Salts Influence Ranavirus Outbreaks In Wood Frog (Lithobates Sylvaticus) Tadpoles, Sarah Jacobson

Honors Scholar Theses

Ecosystems are increasingly being exposed to anthropogenic stressors that could make animals and thus populations more susceptible to disease. For example, the application of deicing salts to roads is increasing in the northeastern United States. Chronic stress that larval amphibians experience when living in vernal pools with high salinity may alter their susceptibility to ranavirus, a pathogen responsible for mass mortality events worldwide. This project quantifies the effects of road salts and ranavirus exposure on larval wood frog (Lithobates sylvaticus) growth and survival. Using outdoor mesocsoms, we raised wood frog tadpoles in salt treatments and then exposed them …

American White Pelicans, Tommy King

Wildlife Damage Management Technical Series

American white pelicans (Pelecanus erythrorhynchos, Figure 1) threaten aquaculture producers by direct predation and the spread of disease. They are also considered competition and a nuisance by some sports fishermen. Pelicans can also damage pond levees and crops, such as rice, by trampling the vegetation and depositing guano. A combination of wildlife damage management techniques is often necessary to reduce pelican damage to these resources. Aquaculture Prior to the winter of 1992, American white pelican depredations at catfish facilities in the Delta regions of Arkansas and Mississippi were limited, and birds were easily dispersed from the area. Since 1992, however, …