Terrestrial and Aquatic Ecology Commons^™

Walleye And White Bass Recruitment In Southwest Nebraska Irrigation Reservoirs, Jason Andrew Deboer

School of Natural Resources: Dissertations, Theses, and Student Research

Walleye Sander vitreus and white bass Morone chrysops are among the most popular sportfish in the reservoirs of the Great Plains. Despite considerable effort by the Nebraska Game and Parks Commission stocking walleye and managing reservoirs for walleye and white bass, populations of walleye and white bass in southwest Nebraska reservoirs are dynamic, as erratic recruitment has led to “boom and bust” fisheries for these two species. We investigated 1) factors regulating walleye and white bass recruitment during an 18-year period at five reservoirs, and 2) walleye spawning ecology at two reservoirs that differ in their degree of environmental variability. …

Review Of Report On The “Status Of Nearshore Finfish Stocks In South-Western Western Australia: Australian Herring And Tailor”, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

West Coast Rock Lobster Fishery Ecological Risk Assessment 20 February 2013, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

In-Water Hull Cleaning And Filtration System: In-Water Cleaning Trials, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Guidance Statement For Oil And Gas Industry Consultation With The Department Of Fisheries, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

A Survey Of Aquatic Invertebrate Communities In Nebraska Sandhill Lakes Reveals Potential Alternative Ecosystem States, J.C. Jolley, E.S. Albin, M.A. Kaemingk, D.W. Willis

Natural Resource Management Faculty Publications

Aquatic invertebrate communities are important to shallow lake ecosystem form and function, providing vital components to the food web and thereby important to achieving lake management goals. We characterized lake invertebrate communities and physicochemical variables in six Nebraska Sandhill lakes and examined these characteristics within an alternative stable state framework. Surveys were conducted during 2005 within each of these lakes by sampling aquatic macroinvertebrate abundance, zooplankton abundance and biomass, phytoplankton biomass, and physicochemical variables. When placed within an alternative stable state framework, the response variables exhibited a gradient of different ecosystem states. Two lakes appeared congruent with the clear water …

Comparative Phylogeography Of The Emperor Snappers Lethrinus Lentjan And Lethrinus Harak (Lethrinidae: Percoidei) In The Coral Triangle, Andrew B. Hines

Biological Sciences Theses & Dissertations

Many questions remain regarding the origins of the well-known peak in marine biodiversity found in the Coral Triangle. Barriers to gene flow may promote lineage diversification and provide the potential for speciation contributing to the high biodiversity in this area. Population structure was examined in two species of Emperor Snappers (Lethrinidae), Lethrinus harak and Lethrinus lentjan. These species were selected because they share similar life-history traits and geographic distributions, but differ in their habitat preferences. Specimens were collected from within the Coral Triangle as well as other localities across the Indo-Pacific. To investigate phylogeographic patterns and structure a hypervariable …

Evaluating The Effects Of Road Crossing Structures On Stream-Associated Amphibians In The Wilson River Watershed, Tillamook State Forest, Oregon, Sara Erin Twitchell

Dissertations and Theses

As replacement and removal of undersized culverts gains momentum as an effective technique for restoring natural stream flows and removing fish passage barriers, it is important to evaluate the benefits of these efforts on the in-stream and adjacent riparian habitat for other species of potential concern. This study compares stream-associated amphibian (SAA) occurrence in streams adjacent to different road crossing structures on unpaved forest roads in the Wilson River watershed located within the Tillamook State Forest, Oregon. Surveys were conducted at road crossing structures for three taxa of SAA; Pacific giant salamander (Dicamptodon tenebrosus), coastal tailed frog (Ascaphus truei), and …

Continuous, Pulsed And Disrupted Nutrient Subsidy Effects On Ecosystem Productivity, Stability, And Energy Flow, Michael J. Weber, Michael L. Brown

Natural Resource Management Faculty Publications

Resource pulses and subsidies can supply ecosystems with an important source of nutrients that supports additional productivity at multiple trophic levels. Common carp Cyprinus carpio provide ecosystems with a continuous nutrient subsidy through bioturbation and excretion but may also initiate a nutrient pulse through carcass decomposition. We examined how continuous (common carp foraging and excretion), pulsed (carcass decomposition) and disrupted (carp introduced and then removed) nutrient subsidies differed in their ability to alter nutrient availability, ecosystem productivity and stability and energy flow. Nitrogen and phosphorus availability and primary production were highest in pulsed, intermediate in continuous and lowest for disrupted …

Examining The Influence Of Mating Systems On Testes Size In Salamanders, Howard James Stanton Ii

Theses, Dissertations and Capstones

Sperm competition theory predicts that relatively larger testes sizes evolve in animals with polygamous mating systems compared to those in monogamous mating systems due to sperm competition. Whereas intensity of sperm competition is the significant predictor of testes sizes in other taxa such as mammals, frogs, birds, insects, and fish, in salamanders the intensity of male-male competition in the transfer of spermatophores to females is predicted to be a critical factor. This is because males have to deposit more spermatophores to secure reproductive pay-off under higher intensity of male-male competition. I hypothesized that salamander species that breed explosively as groups …

Quantitative Reconstruction And Two-Dimensional, Steady Flow Hydrodynamics Of The Plesiosaur Flipper, Mark Cruz Deblois

Theses, Dissertations and Capstones

Plesiosaurs are a group of extinct marine reptiles that thrived during the Mesozoic Era. They are unique for swimming with two hydrofoil-shaped flippers. Penguins, sea turtles, and cetaceans all have hydrofoil shaped flippers but penguins and sea turtles only use the front pair to produce thrust and cetaceans use their tail flukes. Consequently, the mode of swimming for plesiosaurs has long been debated. However, a quantitative study of the hydrodynamic properties of the flippers, which would constrain inference about their mode of swimming, has not yet been done. The main reason is that the trailing edge of the plesiosaur flipper …

Gulf-Wide Decreases In The Size Of Large Coastal Sharks Documented By Generations Of Fishermen, Sean P. Powers, F. Joel Frodrie, Steven B. Scyphers, J. Marcus Drymon, Robert L. Shipp, Gregory W. Stunz

University Faculty and Staff Publications

Large sharks are top predators in most coastal and marine ecosystems throughout the world, and evidence of their reduced prominence in marine ecosystems has been a serious concern for fisheries and ecosystem management. Unfortunately, quantitative data to document the extent, timing, and consequences of changes in shark populations are scarce, thwarting examination of long-term (decadal, century) trends, and reconstructions based on incomplete data sets have been the subject of debate. Absence of quantitative descriptors of past ecological conditions is a generic problem facing many fields of science but is particularly troublesome for fisheries scientists who must develop specific targets for …

Dietary Preference Of The Queensnake (Regina Septemvittata), Timothy J. Brust

Theses, Dissertations and Capstones

The Queensnake (Regina septemvittata) is a small secretive water snake found throughout the eastern United States. Once common, their numbers have declined to the extent that they are now threatened throughout most of their range, largely the result of pollutant-based reduction in prey species. These snakes are assumed to eat molted crayfish exclusively. For some common crayfish species, molting happens only twice a summer during a two- week period. It has not been documented if Queensnakes eat anything besides crayfish on a regular basis. The purpose of this study was to determine the prey preference of Queensnakes with particular focus …

White Bass Assessment In Regards To Changes In Water Level On Lake Traverse, Aaron Wilson

Journal of Earth and Life Science

Until recently the white bass Morone chrysops has been somewhat ignored by anglers, more so in Minnesota than other states; most likely due to their limited distribution throughout the state. However, with more anglers becoming aware of the sporting and culinary potentials of white bass, interests have risen. With this rise in angler interest, there should be a rise in white bass assessments. Knowing what factors may be influencing white bass population dynamics will allow fisheries professionals to better manage and protect white bass fisheries. White bass are often found in rivers and impoundments were dams are present and water …

Brown Trout Spawning Location And Relationship To Suitable Winter Habitat, Matthew L. Skoog

Journal of Earth and Life Science

Brown trout are a popular game fish throughout much of the world. Understanding habitat requirements is necessary for the successful management of brown trout. This study looks at the spawning habitat preferences and relationship of redd location to wintering habitat of brown trout in the Straight River, Minnesota. Brown trout in the Straight River were found to spawn in similar habitat to brown trout looked at in previous literature. All redds were located on gravel substrate. Seventy eight percent of redds were associated with some sort of cover. Water velocities at the redd sites. (mean=0.456 ms/cm), dissolved oxygen (mean=9.78 mg/L), …

Comparison Of A Length Size Limit Of Northern Pike Population On Two Lakes In North Central Minnesota, Ethan A. Puttonen

Journal of Earth and Life Science

Fisheries managers use length size limits on northern pike (Esox lucis) to improve the size structure in select lakes. The objective of this study was to compare two similar lakes, one with a length size limit and one without, to determine if a length size limit is improving the northern pike size structure. Blueberry Lake showed a higher abundance of larger fish than Stocking Lake. Of the fish caught, 25% in Blueberry Lake were over 600 mm (24 in), and were in the protected slot. Stocking Lake had a smaller portion of fish of this size with only …

Short-Term Responses Of Fish Assemblages To Habitat Restoration In A Small Midwestern Stream, John Leon West

Masters Theses

Recent efforts to restore stream habitat have become a common practice, yet evaluations of biotic responses to these practices are not as common. I evaluated fish assemblage response to restoration in a reach of Kickapoo Creek, a fourth order stream southwest of Charleston, Illinois. Restoration included 446 meters of bank stabilization, pool scouring keys, and the creation of two artificial riffles. To have a representation of pre-restoration fish assemblages, I sampled four stream reaches of Kickapoo Creek twice before construction of habitat restoration: two control reaches (upstream and downstream) and two restored reaches within a 0.5 km restoration stretch (upstream …

Evaluating The Utility Of Beaver Reintroduction Programs For Enhancing Habitat For Rainbow Trout And Steelhead, Jonathan Rodger Hegna

All Master's Theses

Beaver reintroduction programs are increasingly being viewed as a way to enhance salmonid habitat and production. However, the actual effectiveness of using beavers as a habitat enhancement tool for ESA listed steelhead Oncorhynchus mykiss populations is unknown. We examined the type of habitat, at both the microhabitat and mesohabitat levels, preferred by steelhead in three small streams in the upper Yakima Basin, WA through standard snorkel surveys and habitat measurements. Our results suggest that steelhead in small streams strongly prefer (relative to availability) microhabitats that have deeper water(> 30 cm), slow stream velocities(< 0 .05 mis), and complex cover types. Habitat partitioning among the size-classes (small< 50 mm, medium 50-90 mm, large> 90 mm total length, TL) principally operated …

Habitat Modeling Of Three Endemic Crayfish Species In The Black River Drainage Of Missouri And Arkansas: Factors Affecting Distribution And Abundance, Matthew Stephen Nolen

Graduate Theses and Dissertations

The Ozark faunal region of Missouri and Arkansas harbors a high level of aquatic biological diversity, especially in regards to endemic crayfish. Orconectes eupunctus, Orconectes marchandi, and Cambarus hubbsi are three such endemics that are threatened by a limited natural distribution and the invasions of Orconectes neglectus. I sought to determine how natural and anthropogenic factors influence these three species across multiple spatial scales. Local and landscape data were used in decision tree analyses (CART) to determine their influence effect on presence/absence and density of the three species. Predictive models were validated using k-fold cross validation. O. eupunctus presence was …

Strike Mechanics Of An Ambush Predator: The Spearing Mantis Shrimp, M. Devries, E. Murphy, S. Patek

Faculty Publications, Biological Sciences

Ambush predation is characterized by an animal scanning the environment from a concealed position and then rapidly executing a surprise attack. Mantis shrimp (Stomatopoda) consist of both ambush predators (‘spearers’) and foragers (‘smashers’). Spearers hide in sandy burrows and capture evasive prey, whereas smashers search for prey away from their burrows and typically hammer hard-shelled, sedentary prey. Here, we examined the kinematics, morphology and field behavior of spearing mantis shrimp and compared them with previously studied smashers. Using two species with dramatically different adult sizes, we found that strikes produced by the diminutive species, Alachosquilla vicina, were faster (mean peak …

The Communicator, Volume 8, Issue 2, November 2012

The Communicator: News from the Nebraska Cooperative Fish and Wildlife Research Unit

New and Changing Faces: We welcome Emma Brinley Buckley, Lucia Corral, Caitlyn Gillespie, and Brian Hammond to the Coop Unit.

Predicting Grassland Bird Responses to Biofuel–Based Landuse Change

Honors and Awards: Chris Chizinski, Chris Jorgensen, Jason DeBoer, Ryan Stutzman

Moving On: Karie Decker, Chris Jorgensen, Peter Spirk, Ryan Stutzman, Kristine Nemec, Dan Uden

Service Education, Outreach Activities, Publications, Career Opportunity, ANNUAL MEETING, Conferences/Meetings/Workshops

Swimways: Protecting Paddlefish Through Movement-Centered Management, Brenda M. Pracheil, Mark A. Pegg, Larkin A. Powell, Gerald Mestl

School of Natural Resources: Faculty Publications

Attempts to mitigate lack of formal interjurisdictional paddlefish management have been made in the United States through the Mississippi River Interstate Cooperative Resource Association (MICRA). We used 1988–2009 data from the MICRA paddlefish (Polyodon spathula) stock assessment database—a database containing mark–recapture and biometric information on more than 30,000 individually marked wild paddlefish and more than 2 million hatchery-origin paddlefish—to estimate survival and movement across large and potentially biologically relevant spatial scales. Paddlefish frequently moved between political jurisdictions with differing conservation strategies and harvest regulations and showed differences in survival parameter estimates throughout their range. We argue that the degree of …

Topeka Shiner (Notropis Topeka): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Topeka shiner (Notropis topeka) as a Tier I at-risk species of high priority for conservation. Some general management recommendations are made here regarding Topeka shiners; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the Topeka shiner that …

Exploring The Houtman Abrolhos Islands, Western Australia. Department Of Fisheries

Fisheries Occasional Publications

This booklet is designed to assist you in exploring and appreciating the Houtman Abrolhos Islands. It provides a general overview on the attributes of the Abrolhos that make it so unique. A place rich in ecological, historical, economic and cultural significance for Western Australia.

Apart from being an introduction to the Abrolhos, the booklet also provides background and context for the various management plans and strategies developed and implemented to sustainably manage these Islands and their surrounding waters.

An Approach For Use Of Dual Frequency Identification Sonar (Didson) To Quantify Behavioral Aspects Of Piscivory At Ecologically Relevant Time And Space Scales, Victoria E. Price

Master's Theses

Predator-prey interactions of large vagile fishes are difficult to study in the ocean due to limitations in the space and time requirements for observations. Small-scale direct underwater observations by divers (<10m >radius) and large-scale hydroacoustic surveys (10s - 100s km2) are traditional approaches. However, large piscivorous predators identify and attack prey at the scale of meters to tens of meters. Dual- Frequency Identification Sonar, or DIDSON, is a high-resolution acoustic camera operating in the MHz range that provides detailed continuous video-like imaging of objects out to 30 m range. This technology can be used to observe predator-prey interactions at ecologically …

Terrestrial Habitat Requirements Of Nesting Freshwater Turtles, D. A. Steen, J. P. Gibbs, K. A. Buhlman, J. L. Carr, B. W. Compton, J. D. Congdon, J. S. Doody, J. C. Godwin, Kerry L. Holcomb, D. R. Jackson, F. J. Janzen, G. Johnson, M. T. Jones, J. T. Lamer, T. A. Langen, M. V. Plummer, J. W. Rowe, R. A. Saumure, J. K. Tucker, D. S. Wilson

All Faculty Scholarship for the College of the Sciences

Because particular life history traits affect species vulnerability to development pressures, cross-species summaries of life history traits are useful for generating management guidelines. Conservation of aquatic turtles, many members of which are regionally or globally imperiled, requires knowing the extent of upland habitat used for nesting. Therefore, we compiled distances that nests and gravid females had been observed from wetlands. Based on records of > 8000 nests and gravid female records compiled for 31 species in the United States and Canada, the distances that encompass 95% of nests vary dramatically among genera and populations, from just 8 m for Malaclemys to …

Genetic Variation In Potentially Virulent Vibrio Parahaemolyticus From The Northern Gulf Of Mexico, Nicholas Felix Noriea Iii

Dissertations

Vibrio parahaemolyticus (V_p) is a gram-negative bacterium found naturally in marine and estuarine environments. V_p is found in oysters including those which are later consumed by the public. Sub-populations of potentially virulent Vp contain specific virulence factors and are relevant human pathogens capable of causing gastroenteritis, wound infection, and death. The tdh and trh genes, both encoding hemolysins, have been correlated with the majority of clinical V_p isolates but have not been shown to be the definitive virulence factors.

A total of 146 V_p isolates from the northern Gulf of Mexico were collected and probed …

Effects Of Hypoxia And 4-Tert-Octylphenol On Gene Expression Profiles Of The Sheepshead Minnow (Cyprinodon Variegatus), Arthur Alan Karels

Dissertations

Hypoxia occurs in estuaries of northern Gulf of Mexico and world-wide, with increasing frequency/severity via eutrophication and anthropogenic influences. Hypoxia inducible factors (HIFs) form transcriptional complex and bind DNA at hypoxia responsive elements (HREs) in promoter regions of genes needed for systemic and cellular adaptation of fish to low dissolved oxygen (hypoxia, DO <2.0 mg/ml). Hypoxia-induced activation of HIF-αs can lead to a cascade of downstream activation, such as erythropoietin (EPO). Return to normal DO levels (normoxia), prolyl hydroxylases (PHDs) are activated to degrade HIF-αs back to baseline. Fish are affected by environmental estrogen mimics, like 4-tert-octylphenol (4tOP), binding estrogen receptor alpha (ERα) at estrogen responsive elements (EREs) and activating genes vitellogenin (VTG). Previous research showed overlap or crosstalk between these two mechanistic pathways. Hypoxia triggers unknown factors regulating ERE-mediated ERα signaling pathway, and stressor combinations could increase/decrease hypoxic or endocrine pathway. Research examined molecular/physiological effects of hypoxia (acute and chronic, moderate and severe) and 4tOP (~60μg/L)on adult male and/or female sheepshead minnow (Cyprinodon variegatus). Three genes identified, cloned, and sequenced (HIF-1α, HIF-2α, and PHD3), plus previously identified genes EPO and VTG, were examined in liver/testes exposed to hypoxia and/or 4tOP for cellular/physiological changes. Endpoints examined included mRNA expression from real-time PCR of HIF-1α, HIF-2α, PHD3, EPO, and VTG using cDNA from total RNA extracts, and microarray analyses of genes expressed during the transition from hypoxia back to normoxia. Phylogenetic analyses confirmed isolation of two HIF-α isofoms (HIF-1α and HIF-2α) and the PHD3 isoform. Significant up-regulation of PHD3 occurred within 10 hrs of chronic hypoxia, and persisted when severe (1.5 mg/L) and declined when moderate (~2.5mg/L). Significant up-regulation of HIF-1α and EPO occurred within 30 minutes to 2 hours of onset of acute severe and very severe (~1.08mg/L) hypoxia. Hypoxia acted similar to an estrogen mimic, with huge up-regulation of VTG gene expression in males, and increased VTG levels (additive effect) when hypoxia was combined with 4tOP. Microarray analyses showed 125 genes with significant transcriptional change, with up- or down-regulation from transitions of: (1) hypoxia (72 hrs) to normoxia (74 hrs) and (2) hypoxia+4tOP (72 hrs) to normoxia+4tOP (74 hrs).

Comparison Of Creel Survey Data To Traditional Sampling Techniques In Pit-Lake Fisheries Of Muhlenberg County, Kentucky, Derek L. Rupert

Masters Theses & Specialist Projects

Populations of largemouth bass, Micropterus salmoides, and bluegill, Lepomis macrochirus, were evaluated from five pit-lakes in Muhlenberg County, Kentucky, to determine if accurate proportional stock density (PSD) data can be obtained from a mandatory creel survey. It was hypothesized that the proportion of stock-to-quality (300-400mm) and quality (+400mm) largemouth bass from four years (2007-2010) of creel survey data would be statistically similar to those generated through on-site sampling in 2011. Fish were collected via a combination of gill netting, seining, hook-and-line fishing, and boat-mounted electro-fishing. In two of the pit-lakes, the sampling-generated length frequency data was not significantly …

Diversity And Distribution Of Mongolian Fish: Recent State, Trends And Studies, Yuri Dgebuadze, Bud Mendsaikhan, Ayurin Dulmaa

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

The studies in recent years (2000-2011) have allowed to make more precise the list and ranges of Mongolian fish. This is connected with new findings as well as the continuing process of invasion of alien species. Climate change and increase of human impact transformed ranges and local distribution of fish during last 30 years. Bias on ratio of ecological guilds, number of pathological findings are increasing, and declining of local diversity, rate of growth and fecundity of many species of fish are observed. In the course of long-term observation was confirmed periodically drying of waters of the Central Asian Lake …