Terrestrial and Aquatic Ecology Commons^™

Short-Term Responses Of Fish Assemblages To Habitat Restoration In A Small Midwestern Stream, John Leon West

Masters Theses

Recent efforts to restore stream habitat have become a common practice, yet evaluations of biotic responses to these practices are not as common. I evaluated fish assemblage response to restoration in a reach of Kickapoo Creek, a fourth order stream southwest of Charleston, Illinois. Restoration included 446 meters of bank stabilization, pool scouring keys, and the creation of two artificial riffles. To have a representation of pre-restoration fish assemblages, I sampled four stream reaches of Kickapoo Creek twice before construction of habitat restoration: two control reaches (upstream and downstream) and two restored reaches within a 0.5 km restoration stretch (upstream …

Biology Department Newsletter, No. 3, Sacred Heart University

Biology Newsletter

No abstract provided.

Microsatellite Analysis Of Trophy Largemouth Bass From Arkansas Reservoirs, K. A. Lamothe, Ronald L. Johnson

Journal of the Arkansas Academy of Science

The Arkansas Game and Fish Commission (AGFC) has introduced Florida largemouth bass (FLMB; Micropterus salmoides floridanus) to water bodies historically containing the northern largemouth bass (NLMB; Micropterus salmoides salmoides) subspecies since the late 1970s in an attempt to produce a trophy LMB fishery. Since 2006, the AGFC has been biannually sampling reservoirs stocked with FLMB to determine levels of admixture. Here, total sampling efforts between 2006 and 2011 have been combined, and LMB heavier than 2,268 g (5 lb) were analyzed in an effort to investigate distribution of bass by their genetic composition designated as trophy LMB by the AGFC. …

Evaluating The Utility Of Beaver Reintroduction Programs For Enhancing Habitat For Rainbow Trout And Steelhead, Jonathan Rodger Hegna

All Master's Theses

Beaver reintroduction programs are increasingly being viewed as a way to enhance salmonid habitat and production. However, the actual effectiveness of using beavers as a habitat enhancement tool for ESA listed steelhead Oncorhynchus mykiss populations is unknown. We examined the type of habitat, at both the microhabitat and mesohabitat levels, preferred by steelhead in three small streams in the upper Yakima Basin, WA through standard snorkel surveys and habitat measurements. Our results suggest that steelhead in small streams strongly prefer (relative to availability) microhabitats that have deeper water(> 30 cm), slow stream velocities(< 0 .05 mis), and complex cover types. Habitat partitioning among the size-classes (small< 50 mm, medium 50-90 mm, large> 90 mm total length, TL) principally operated …

The Small Mammals Of Two Dune Communities In Southeastern Virginia, Robert K. Rose, Justin L. Sweitzer

Virginia Journal of Science

Small mammals were surveyed using live and pitfall traps between the primary and secondary dunes at two locations on the shores of the Chesapeake Bay near the Atlantic Ocean: Little Creek Amphibious Base in Norfolk and Joint Expeditionary Base Fort Story in Virginia Beach, Virginia. Captures were dominated by house mice (Mus musculus) in interdunal habitats with sparse grass, whereas white-footed mice (Peromyscus leucopus) were found primarily in shrubby live-oak thickets on the tops of dunes. Hispid cotton rats (Sigmodon hispidus) were present only at Fort Story, and then only in patches of dense …

Antelope Mating Strategies Facilitate Invasion Of Grasslands By A Woody Weed, Shivani Jadeja, Soumya Prasad, Suhel Quader, Kavita Isvaran

School of Biological Sciences: Faculty Publications

Intra and interspecific variation in frugivore behaviour can have important consequences for seed dispersal outcomes. However, most information comes from among-species comparisons, and within-species variation is relatively poorly understood. We examined how large intraspecific differences in the behaviour of a native disperser, blackbuck antelope Antilope cervicapra, influence dispersal of a woody invasive, Prosopis juliflora, in a grassland ecosystem. Blackbuck disperse P. juliflora seeds through their dung. In lekking blackbuck populations, males defend clustered or dispersed mating territories. Territorial male movement is restricted, and within their territories males defecate on dung-piles. In contrast, mixed-sex herds range over large areas …

On The Morphology And Taxonomy Of Griphobilharzia Amoena Platt And Blair, 1991 (Schistosomatoidea), A Dioecious Digenetic Trematode Parasite Of The Freshwater Crocodile, Crocodylus Johnstoni, In Australia [Critical Comment], Thomas R. Platt, Eric P. Hoberg, Leslie A. Chisholm

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Griphobilharzia amoena Platt and Blair, 1991 was originally described was originally described as a dioecious trematode, parasitic in the circulatory system of the Australian freshwater crocodile, Crocodylus johnstoni, with the female completely enclosed in a gynecophoric chamber of the male and the two worms orientated anti-parallel to each other. A recent publication questions the original description, arguing that G. amoena is monoecious and, as a consequence, the species was transferred to Vasotrema Stunkard, 1928 (Spirorchiidae) as Vasotrema amoena n. comb. We provide photomicrographic evidence that the original description of G. amoena is correct and that Griphobilharzia Platt and Blair, …

Mutation From Arginine To Lysine At The Position 189 Of Hemagglutinin Contributes To The Antigenic Drift In H3n2 Swine Influenza Viruses, Jianqiang Ye, Yifei Xu, Jillian Harris, Hailiang Sun, Andrew S. Bowman, Fred L. Cunningham, Carol Cardona, Kyoungjin J. Yoon, Richard D. Slemons, Xiu-Feng Wan

United States Department of Agriculture Wildlife Services: Staff Publications

Two distinct antigenic clusters were previously identified among the H3N2 swine influenza A viruses (IAVs) and were designated H3N2SIV-alpha and H3N2SIV-beta (Feng et al., 2013. Journal of Virology 87(13), 7655–7667). A consistent mutation was observed at the position 189 of hemagglutinin (R189K) between H3N2SIV-alpha and H3N2SIV-beta fair isolates. To evaluate the contribution of R189K mutation to the antigenic drift from H3N2SIV-alpha to H3N2SIV-beta, four reassortant viruses with189R or189K were generated. The antigenic cartography demonstrated that the R189K mutation in the hemagglutinin of H3N2IAV contributed to the antigenicdrift, separating these viruses into H3N2SIV-alpha to H3N2SIV- beta. This R189K mutation was also …

A New Species Of Metathelazia (Nematoda: Pneumospiruridae) From The Lungs Of A Nine-Banded Armadillo In Central Mexico = Especie Nueva De Metathelazia (Nematoda: Pneumospiruridae) De Los Pulmones De Un Armadillo Del Centro De México, F. Agustín Jiménez-Ruiz, Rogelio Rosas-Valdez, Scott Lyell Gardner

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Twenty-four worms were collected from the bronchioles in both lungs of a male nine-banded armadillo Dasypus novemcinctus Linnaeus, 1758 captured in Teacalco, Morelos, Mexico. The worms, herein named Metathelazia mexicana n. sp., show a constriction in the esophagus at the level of the nerve ring; males of the species have 7 pairs of papillae, fewer than the other species in the genus. Metathelazia capsulata is the most similar species to Metathelazia mexicana; however, the latter has much shorter spicules. This is the fourth species in the genus known to occur in the New World.

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Exploring The Sulfide Tolerance Of Ectosymbiotic Niphargus Amphipods From The Frasassi Caves, Central Italy, Jan Bauermeister, Karoline Assig, Sharmishtha Dattagupta

International Journal of Speleology

Two species of the crustacean amphipod genus Niphargus inhabit the sulfidic groundwaters of the Frasassi caves in central Italy, and both harbor filamentous, sulfide-oxidizing Thiothrix ectosymbionts. As sulfide is toxic to most aerobic organisms, it appeared possible that the ectosymbionts could help their Niphargus hosts with detoxification processes. In this study, mortality due to sulfide was compared between Niphargus individuals with ectosymbionts and individuals whose ectosymbionts had been killed by antibiotic treatment. Both Frasassi-dwelling Niphargus species revealed exceptionally high tolerances to sulfide compared to other amphipod species studied so far. Niphargus individuals without viable ectosymbionts tolerated sulfide levels exceeding those …

Ghost Tiger Beetle (Cicindela Lepida): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the ghost tiger beetle, a.k.a. white tiger beetle, (Cicindela lepida) as a Tier I at-risk species of high conservation priority. Some general management recommendations are made here regarding ghost tiger beetles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge …

Life History Variation Of Common Terns In The Gulf Of Maine, Jeffery Bryant Kimmons

Graduate Theses and Dissertations

Life history is the inheritable rules that determine energy and time allocation towards different competing functions in the energy budget of an organism. Reproductive effort varies as organisms make reproductive decisions based on available energy. Factors influencing life histories are those that change energy and time budgets such as diet, competition, and environmental conditions.

Common tern (Sterna hirundo) life history phenotypes vary between islands in the Gulf of Maine. Common terns on offshore islands (>10km from mainland) and nearshore islands (5 to 10km from mainland) lay smaller clutches, hatching chicks with slower growth rates than common terns …

Molecular Phylogeny Of Microhylid Frogs (Anura: Microhylidae) With Emphasis On Relationships Among New World Genera, Rafael O. De Sá, Jeffrey W. Streicher, Relebohile Sekonyela, Mauricio C. Forlani, Simon P. Loader, Eli Greenbaum, Stephen Richards, Célio F.B. Haddad

Biology Faculty Publications

Background: Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis).

Results: One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an …

Habitat Modeling Of Three Endemic Crayfish Species In The Black River Drainage Of Missouri And Arkansas: Factors Affecting Distribution And Abundance, Matthew Stephen Nolen

Graduate Theses and Dissertations

The Ozark faunal region of Missouri and Arkansas harbors a high level of aquatic biological diversity, especially in regards to endemic crayfish. Orconectes eupunctus, Orconectes marchandi, and Cambarus hubbsi are three such endemics that are threatened by a limited natural distribution and the invasions of Orconectes neglectus. I sought to determine how natural and anthropogenic factors influence these three species across multiple spatial scales. Local and landscape data were used in decision tree analyses (CART) to determine their influence effect on presence/absence and density of the three species. Predictive models were validated using k-fold cross validation. O. eupunctus presence was …

Strike Mechanics Of An Ambush Predator: The Spearing Mantis Shrimp, M. Devries, E. Murphy, S. Patek

Faculty Publications, Biological Sciences

Ambush predation is characterized by an animal scanning the environment from a concealed position and then rapidly executing a surprise attack. Mantis shrimp (Stomatopoda) consist of both ambush predators (‘spearers’) and foragers (‘smashers’). Spearers hide in sandy burrows and capture evasive prey, whereas smashers search for prey away from their burrows and typically hammer hard-shelled, sedentary prey. Here, we examined the kinematics, morphology and field behavior of spearing mantis shrimp and compared them with previously studied smashers. Using two species with dramatically different adult sizes, we found that strikes produced by the diminutive species, Alachosquilla vicina, were faster (mean peak …

Ring-Necked Pheasant Hens Select Managed Conservation Reserve Program Grasslands For Nesting And Brood-Rearing, Ty W. Matthews, J. Scott Taylor, Larkin A. Powell

School of Natural Resources: Faculty Publications

The Conservation Reserve Program (CRP) has provided critical wildlife habitat for many species since 1985. However, the quality of this habitat for early successional species, such as ring-necked pheasant (Phasianus colchicus), may decrease with field age. Late successional grasslands may lack valuable vegetative and structural diversity needed by pheasants, especially during nesting and brood-rearing stages. Since 2004, the United States Department of Agriculture has required new CRP contracts to include plans for mid-contract management, which could include discing and interseeding. The benefits of such practices have not been assessed, and continuation of current policy could be affected by the lack …

The Communicator, Volume 8, Issue 2, November 2012

The Communicator: News from the Nebraska Cooperative Fish and Wildlife Research Unit

New and Changing Faces: We welcome Emma Brinley Buckley, Lucia Corral, Caitlyn Gillespie, and Brian Hammond to the Coop Unit.

Predicting Grassland Bird Responses to Biofuel–Based Landuse Change

Honors and Awards: Chris Chizinski, Chris Jorgensen, Jason DeBoer, Ryan Stutzman

Moving On: Karie Decker, Chris Jorgensen, Peter Spirk, Ryan Stutzman, Kristine Nemec, Dan Uden

Service Education, Outreach Activities, Publications, Career Opportunity, ANNUAL MEETING, Conferences/Meetings/Workshops

Mccown’S Longspur (Rhynchophanes Mccownii): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the McCown’s Longspur (Rhynchophanes mccownii) as a Tier I at-risk species. Some general management recommendations are made here regarding the McCown’s Longspur (MCLO); however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of MCLO that will aid in the decision-making …

Swimways: Protecting Paddlefish Through Movement-Centered Management, Brenda M. Pracheil, Mark A. Pegg, Larkin A. Powell, Gerald Mestl

School of Natural Resources: Faculty Publications

Attempts to mitigate lack of formal interjurisdictional paddlefish management have been made in the United States through the Mississippi River Interstate Cooperative Resource Association (MICRA). We used 1988–2009 data from the MICRA paddlefish (Polyodon spathula) stock assessment database—a database containing mark–recapture and biometric information on more than 30,000 individually marked wild paddlefish and more than 2 million hatchery-origin paddlefish—to estimate survival and movement across large and potentially biologically relevant spatial scales. Paddlefish frequently moved between political jurisdictions with differing conservation strategies and harvest regulations and showed differences in survival parameter estimates throughout their range. We argue that the degree of …

Review Of Conspecific Attraction And Area Sensitivity Of Grassland Birds, David R.W. Bruinsma, Nicola Koper

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Many species of grassland birds are area sensitive, which may exacerbate the ecological effects of the extensive loss and fragmentation of grasslands that has taken place across the northern Great Plains. However, the reasons for this area sensitivity are unclear, as vegetation structure, matrix composition, and restriction of movements among patches do not seem to provide viable explanations for species native to grasslands. Con specific attraction, whereby species are behaviorally stimulated to select habitat or establish territories near individuals of the same species, may help explain this area sensitivity. We review and discuss theoretical and empirical research on avian conspecific …

Plains Harvest Mouse (Reithrodontomys Montanus Griseus): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding species of interest. The Nebraska Natural Legacy Project recognizes the plains harvest mouse (Reithrodontomys montanus griseus) as a Tier I at-risk species of high conservation need. Some general management recommendations are made here regarding the plains harvest mouse; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the plains harvest mouse …

Topeka Shiner (Notropis Topeka): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Topeka shiner (Notropis topeka) as a Tier I at-risk species of high priority for conservation. Some general management recommendations are made here regarding Topeka shiners; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the Topeka shiner that …

High Prevalence Of The Amphibian Chytrid Fungus (Batrachochytrium Dendrobatidis) Across Multiple Taxa And Localities In The Highlands Of Ethiopia, David J. Gower, Thomas M. Doherty-Bone, Roman K. Aberra, Abebe Mengistu, Silvia Schwaller, Michele Menegon, Rafael O. De Sá, Samy A. Saber, Andrew A. Cunningham, Simon P. Loader

Biology Faculty Publications

Surveys of the potentially lethal amphibian chytrid fungus (Batrachochytrium dendrobatidis - Bd) in Africa are patchy, especially in some regions of high species endemicity. We present results of the first Bd surveys of wild amphibians in Ethiopia, for two upland regions on either side of the Rift Valley: the Bale Mountains and the Kaffa region. Surveys were opportunistic so that robust interpretation of the data is limited. Utilizing diagnostic qPCR assays, 51 out of 120 frogs (14 species in 10 genera) tested positive for Bd at altitudes of 1,620–3,225 m, across all genera and species, and all but …

The Development Of Dermatonotus Muelleri (Anura: Microhylidae: Gastrophryninae), Marissa Fabrezi, Silvia Quinzio, Javier Goldberg, Rafael O. De Sá

Biology Faculty Publications

The monophyly of Microhylidae is supported by an overwhelming accumulation of synapomorphic larval features. Despite the distinctiveness of the microhylid tadpole, few studies have focused on larval development. Microhylid larval morphology is usually described and based on standard tables that imply that developmental events at equivalent stages of overall tadpole development are independent from species-specific patterns of developmental timing. Herein, we present additional developmental data based on external morphology and field data on larval growth for the gastrophrynine microhylid Dermatonotus muelleri. We describe internal morphological variation (e.g., skeletal and soft systems) during larval development. The results indicate that the onset …

Evaluation Of The Effects Of September Hunting Seasons On Canada Geese In Nebraska, Scott R. Groepper, Mark P. Vrtiska, Larkin A. Powell, Scott E. Hygnstrom

School of Natural Resources: Faculty Publications

Populations of temperate-nesting Canada geese (Branta canadensis) have increased in Nebraska, USA, resulting in an increased number of nuisance and damage complaints. September hunting seasons were initiated in southeastern Nebraska in 2004 to reduce populations of Canada geese. We analyzed band recoveries from Canada geese banded in southeastern Nebraska during their hatch-year (HY) or after-hatch-year (AHY) to determine whether September hunting seasons affected survival, harvest, and recovery rates. Survival analyses revealed that HY geese had higher survival than AHY geese (SAHY = 0.696, 95% CI = 0.679–0.713; SHY = 0.896, 95% CI = 0.786–0.953) and September seasons did …

Climate's Role In Polar Bear Past [Letters], Kurt E. Galbreath, Joseph A. Cook, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Striking temporal concordance between the new date for divergence of polar bears and persistent freezing of the Arctic Ocean suggests that this may be one of relatively few instances in which a specific paleoclimatological episode can be convincingly linked to a specific evolutionary event, and it provides vivid demonstration of climatic forcing as a determinant of diversification in biological systems.

Exploring The Houtman Abrolhos Islands, Western Australia. Department Of Fisheries

Fisheries Occasional Publications

This booklet is designed to assist you in exploring and appreciating the Houtman Abrolhos Islands. It provides a general overview on the attributes of the Abrolhos that make it so unique. A place rich in ecological, historical, economic and cultural significance for Western Australia.

Apart from being an introduction to the Abrolhos, the booklet also provides background and context for the various management plans and strategies developed and implemented to sustainably manage these Islands and their surrounding waters.

An Approach For Use Of Dual Frequency Identification Sonar (Didson) To Quantify Behavioral Aspects Of Piscivory At Ecologically Relevant Time And Space Scales, Victoria E. Price

Master's Theses

Predator-prey interactions of large vagile fishes are difficult to study in the ocean due to limitations in the space and time requirements for observations. Small-scale direct underwater observations by divers (<10m >radius) and large-scale hydroacoustic surveys (10s - 100s km2) are traditional approaches. However, large piscivorous predators identify and attack prey at the scale of meters to tens of meters. Dual- Frequency Identification Sonar, or DIDSON, is a high-resolution acoustic camera operating in the MHz range that provides detailed continuous video-like imaging of objects out to 30 m range. This technology can be used to observe predator-prey interactions at ecologically …

Terrestrial Habitat Requirements Of Nesting Freshwater Turtles, D. A. Steen, J. P. Gibbs, K. A. Buhlman, J. L. Carr, B. W. Compton, J. D. Congdon, J. S. Doody, J. C. Godwin, Kerry L. Holcomb, D. R. Jackson, F. J. Janzen, G. Johnson, M. T. Jones, J. T. Lamer, T. A. Langen, M. V. Plummer, J. W. Rowe, R. A. Saumure, J. K. Tucker, D. S. Wilson

All Faculty Scholarship for the College of the Sciences

Because particular life history traits affect species vulnerability to development pressures, cross-species summaries of life history traits are useful for generating management guidelines. Conservation of aquatic turtles, many members of which are regionally or globally imperiled, requires knowing the extent of upland habitat used for nesting. Therefore, we compiled distances that nests and gravid females had been observed from wetlands. Based on records of > 8000 nests and gravid female records compiled for 31 species in the United States and Canada, the distances that encompass 95% of nests vary dramatically among genera and populations, from just 8 m for Malaclemys to …

Genetic Variation In Potentially Virulent Vibrio Parahaemolyticus From The Northern Gulf Of Mexico, Nicholas Felix Noriea Iii

Dissertations

Vibrio parahaemolyticus (V_p) is a gram-negative bacterium found naturally in marine and estuarine environments. V_p is found in oysters including those which are later consumed by the public. Sub-populations of potentially virulent Vp contain specific virulence factors and are relevant human pathogens capable of causing gastroenteritis, wound infection, and death. The tdh and trh genes, both encoding hemolysins, have been correlated with the majority of clinical V_p isolates but have not been shown to be the definitive virulence factors.

A total of 146 V_p isolates from the northern Gulf of Mexico were collected and probed …