Population Biology Commons^™

Estimating Migration Rates Between Populations Of Zostera Marina In The San Francisco Bay, Elizabeth S. Gutierrez

STAR Program Research Presentations

Eelgrass (Zostera marina) is a highly clonal marine angiosperm that can also reproduce sexually through flowering and seed formation. In a previous study, Fst values from six microsatellite loci suggested that a perennial San Francisco Bay subpopulation at Point Molate (Richmond, California) was able to recover from a drastic 2006 die-off through seed recruitment from neighboring eelgrass subpopulations, changing its reproductive strategy from clonal to sexual. Although Fst measures continue to be widely used in population genetics, the assumptions under which they operate are not always appropriate given certain circumstances, such small population sizes and/or asymmetrical migration rates. Our summer …

Human Diversity In Jordan: Polymorphic Alu Insertions In General Jordanian And Bedouin Groups, Daniela Zanetti, May Sadiq, Robert Carreras-Torres, Omar Khabour, Almuthanna Alkaraki, Esther Esteban, Marc Via, Pedro Moral

Human Biology Open Access Pre-Prints

Jordan, located in the Levant region, is a crucial area to investigate human migration between Africa and Eurasia. Even thought, the genetic history of Jordanians is far to be clarified including the origin of the Bedouins today resident in Jordan. Here, we provide new genetic data on autosomal independent markers in two Jordanian population samples (Bedouins and general population) in order to approach the genetic diversity inside this country and to give new information about the genetic position of these populations in the frame of the Mediterranean and Middle East area. The analyzed markers are 18 Alu polymorphic insertions characterized …

Inter-And Intra-Population Variability Across The Transcriptome Of Lake Baikal’S Endemic Copepod With Ramifications For Adapting To Climate Change, Larry L. Bowman Jr

Electronic Theses and Dissertations

The future of Lake Baikal’s biodiversity is uncertain in response to climate change. Unlike its diverse benthos, Lake Baikal’s zooplankton is species poor, with up to 96% of its biomass being composed of a single Calanoid copepod species, Epischura baikalensis. This study characterizes the genetic differentiation and differential gene expression of E. baikalensis. Using partial-transcriptome sequences obtained by 454 Rosche and Illumina sequencing technologies, the genetic differentiation at inferred single nucleotide polymorphism (SNP) sites and differential gene expression in populations sampled from various parts of the lake were analyzed. The functional genomics of genes showed significant differential …

High Connectivity In The Deepwater Snapper Pristipomoides Filamentosus (Lutjanidae) Across The Indo-Pacific With Isolation Of The Hawaiian Archipelago, Michelle R. Gaither, Shelley A. Jones, Christopher Kelley, Stephen J. Newman, Laurie Sorenson, Brian W. Bowen

Fisheries Research Articles

In the tropical Indo-Pacific, most phylogeographic studies have focused on the shallow-water taxa that inhabit reefs to approximately 30 m depth. Little is known about the large predatory fishes, primarily snappers (subfamily Etelinae) and groupers (subfamily Epinephelinae) that occur at 100–400 m. These long-lived, slow-growing species support fisheries across the Indo-Pacific, yet no comprehensive genetic surveys within this group have been conducted. Here we contribute the first range-wide survey of a deepwater Indo-Pacific snapper, Pristipomoides filamentosus, with special focus on Hawai'i. We applied mtDNA cytochrome b and 11 microsatellite loci to 26 samples (N = 1,222) collected across …

Fine-Scale Genetic Structure And Parentage In Urocitellus Beldingi, Marissa R. Lafler

Master's Theses

Urocitellus beldingi (Belding's ground squirrel), previously known as Spermophilus beldingi, is a social, montane rodent that occupies alpine and subalpine meadows in the Sierra Nevadas (Helgen et al. 2009). The Tioga Pass meadow (Mono Co. CA) population has been studied behaviorally and demographically for several decades. Microsatellites were developed for this species and conditions for polymerase chain reaction (PCR) were defined. Nine microsatellite loci amplified adequately and were in Hardy-Weinberg equilibrium, displaying an average heterozygosity of 0.67±0.19. These nine microsatellite loci were analyzed via PCR to elucidate the fine scale genetic structure, offering insight into population health, stochastic events, and …

Phylogeography Of A Vanishing North American Songbird: The Painted Bunting (Passerina Ciris), Connie Ann Herr

UNLV Theses, Dissertations, Professional Papers, and Capstones

Studies of genetic variation within and between species can provide insights into their evolutionary history as well as important information for conserving biodiversity. An understanding of population processes can assist in the conservation of biodiversity by contrasting current versus historical patterns, and the processes that have generated these patterns. Genetic differentiation often coincides with significant geological or climatic changes that have shaped the sizes and locations of the species geographic range and altered the connectivity between populations over time. Phylogenetic and population genetic analyses can also provide a statistical framework for the investigation of how human processes such as habitat …

The Role Of Historical And Contemporary Processes On Phylogeographic Structure And Genetic Diversity In The Northern Cardinal, Cardinalis Cardinalis, Brian T. Smith, Patricia Escalante, Blanca E. Hernandez-Banos, Adolfo G. Navarro-Siguenza, Sievert Rohwer, John Klicka

Ornithology Program (HRC)

Background

Earth history events such as climate change are believed to have played a major role in shaping patterns of genetic structure and diversity in species. However, there is a lag between the time of historical events and the collection of present-day samples that are used to infer contemporary population structure. During this lag phase contemporary processes such as dispersal or non-random mating can erase or reinforce population differences generated by historical events. In this study we evaluate the role of both historical and contemporary processes on the phylogeography of a widespread North American songbird, the Northern Cardinal, Cardinalis cardinalis …

A Phylogeographic And Population Genetic Analysis Of A Widespread, Sedentary North American Bird: The Hairy Woodpecker (Picoides Villosus), John Klicka, Garth M. Spellman, Kevin Winker, Vivien Chua, Brian T. Smith

Ornithology Program (HRC)

The Hairy Woodpecker (Picoides villosus) has one of the broadest breeding distributions of any North American bird and is also one of the most morphologically variable with as many as 21 described subspecies. This wide distribution and high degree of phenotypic diversity suggests the presence of underlying genetic structure. We used ND2 sequence from 296 individuals from 89 localities throughout the Hairy Woodpecker distribution to address this question and to explore this species’ evolutionary history. Phylogenetic analyses identified three main Hairy Woodpecker clades, each ~1.5% divergent from one another. One clade was comprised of birds from boreal and eastern zones …

Phylogeography And Landscape Genetics Of The Flammulated Owl: Evolutionary History Reconstruction And Metapopulation Dynamics, Markus Mika

UNLV Theses, Dissertations, Professional Papers, and Capstones

Taxa occur across ever changing landscapes on different spatial and temporal scales. Choosing the appropriate scale for collecting data and drawing inferences is critical for understanding the history of a species and its populations. Here, I describe research in which I investigated phylogenetic patterns and population genetics for Flammulated Owls (Otus flammeolus) representing 14 localities from throughout the species' distribution, and compared regional landscape features with the distribution of genetic diversity. This small, insectivorous owl migratory (Family Strigidae) breeds in western conifer and deciduous dry forests of the mountains from southern Mexico to British Columbia. Sedentary populations are found in …

Assessing Genetic Differentiation Among Populations Of The Invasive Plant Impatiens Glandulifera In Maine, Jordan R. Schoonover

Honors Theses

The annual herbaceous plant Impatiens glandulifera Royle is native to the Himalayas and is a significant invasive species in Europe. In the past century, it was introduced to the United States, where it has become established in 12 states. This study evaluated genetic differentiation among four Maine populations, to address a theory that posits hybridization of distinct lineages as a trigger for invasiveness. Regions of microsatellite repeats were evaluated at two polymorphic loci for 41 plants sampled from the four populations. A striking finding was that the observed heterozygosity was substantially higher than the heterozygosity expected from random combination of …

Assessment Of Non-Metric Skull Characters And Age Determination In The Asiatic Wild Ass Equus Hemionus: A Methodological Approach, Hermann Ansorge, Annegret Stubbe, Nyamsuren Batsaikhan, Ravčigijn Samjaa, Michael Stubbe

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

The report presents the first information on the use of non-metric skull characters and age determination by tooth section for Asiatic wild asses. It was initiated by a collection of more than 400 skulls of the Asiatic wild ass from the Bordzongijn-Gobi 2002-2004. The methodological overview gives a first research prospect in Asiatic Wild Ass concerning the use of non-metric skull characters as a morphological tool for assessing genetic variability, determining epigenetic divergences and evaluating fluctuating asymmetry. The time course of tooth eruption and replacement in the Asiatic wild ass is described with regard to its use for age determination. …

Population Genetics Of Midcontinent Sandhill Cranes, Jessica L. Petersen, Richard Bischof, Allen L. Szalanski

Proceedings of the North American Crane Workshop

The Midcontinent Sandhill Crane Population is comprised of 3 subspecies, lesser (Grus canadensis canadensis), Canadian (G. c. rowani), and greater (G. c. tabida) sandhill cranes. In conjunction with the USGS Northern Prairie Wildlife Research Center, we studied the extent of genetic variation between and within each race of the Midcontinent Sandhill Crane Population. DNA was extracted from 150 feather and dried blood samples collected from 1995-99 from sandhill cranes in the Platte River Valley, central Nebraska. Parsimony and maximwn likelihood analysis of the mtDNA D-loop sequences (ca 675 bp amplified using PCR) from 29 …