Population Biology Commons^™

Landscape Genetics Of Leaf-Toed Geckos In The Tropical Dry Forest Of Northern Mexico, Christopher Blair, Victor H. Jimenez-Arcos, Fausto R. Mendez De La Cruz, Robert W. Murphy

Publications and Research

Habitat fragmentation due to both natural and anthropogenic forces continues to threaten the evolution and maintenance of biological diversity. This is of particular concern in tropical regions that are experiencing elevated rates of habitat loss. Although less well-studied than tropical rain forests, tropical dry forests (TDF) contain an enormous diversity of species and continue to be threatened by anthropogenic activities including grazing and agriculture. However, little is known about the processes that shape genetic connectivity in species inhabiting TDF ecosystems. We adopt a landscape genetic approach to understanding functional connectivity for leaf-toed geckos (Phyllodactylus tuberculosus) at multiple sites …

Conus: First Comprehensive Conservation Red List Assessment Of A Marine Gastropod Mollusc Genus, Howard Peters, Bethan C. O'Leary, Julie P. Hawkins, Kent E. Carpenter, Callum M. Roberts

Biological Sciences Faculty Publications

Marine molluscs represent an estimated 23% of all extant marine taxa, but research into their conservation status has so far failed to reflect this importance, with minimal inclusion on the authoritative Red List of the International Union for the Conservation of Nature (IUCN). We assessed the status of all 632 valid species of the tropical marine gastropod mollusc, Conus (cone snails), using Red List standards and procedures to lay the groundwork for future decadal monitoring, one of the first fully comprehensive global assessments of a marine taxon. Three-quarters (75.6%) of species were not currently considered at risk of extinction owing …

A Reassessment Of The Conservation Status Of A Critically Endangered Neotropical Frog, Mannophryne Olmonae, Using Occupancy Modeling Techniques, Jessica Mcquigg

Senior Independent Study Theses

Amphibian species worldwide are threatened with decline and extinction, making species monitoring an important scientific endeavor. The Bloody Bay Poison Frog, Mannophryne olmonae, a Tobago island endemic, was identified as critically endangered by the IUCN in 2004. Recent evidence suggests that a less severe conservation status may be appropriate for M. olmonae. This study employs acoustic calling surveys, land-use information, and multi-year (2011 and 2012) occupancy modeling techniques to propose an appropriate conservation status for this species. This study suggests that M. olmonae occupies a larger geographic range than was previously thought, and is not experiencing population declines. …

A Study Of The Spatial Dynamics Of Some Introduced Avian Species In The Southwest Region Of Western Australia, Desiree L. Moon

Theses: Doctorates and Masters

The Southwest region of Western Australia is a recognised ‘biodiversity hotspot’, as it possesses high levels of biodiversity and endemism; it also holds a number of species threatened by habitat loss. The arrival of Europeans in the region wrought major changes on the natural landscape. Extensive tracts of bushland were cleared for housing, infrastructure, forestry, farming, and mining. Another challenge to regional biodiversity was the spread of exotic plants and animals (including birds); the latter provide the focus for the present study. The research examines four bird species that colonised the Southwest region following European settlement: Australian White Ibis (Threskiornis …

Ghost Tiger Beetle (Cicindela Lepida): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the ghost tiger beetle, a.k.a. white tiger beetle, (Cicindela lepida) as a Tier I at-risk species of high conservation priority. Some general management recommendations are made here regarding ghost tiger beetles; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge …

Buchholz Black Dash (Euphyes Conspicua Buchholzi): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Buchholz Black Dash (Euphyes conspicua buchholzi) as a Tier I at-risk species of high conservation priority. The Buchholz Black Dash (BBD) is a subspecies of the Black Dash (Euphyes conspicua). Survival of BBD is likely to be highly influenced by available habitat in Nebraska. Some general management recommendations are made here regarding the BBD; however, conservation practitioners will need to use …

Mccown’S Longspur (Rhynchophanes Mccownii): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the McCown’s Longspur (Rhynchophanes mccownii) as a Tier I at-risk species. Some general management recommendations are made here regarding the McCown’s Longspur (MCLO); however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of MCLO that will aid in the decision-making …

Plains Harvest Mouse (Reithrodontomys Montanus Griseus): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding species of interest. The Nebraska Natural Legacy Project recognizes the plains harvest mouse (Reithrodontomys montanus griseus) as a Tier I at-risk species of high conservation need. Some general management recommendations are made here regarding the plains harvest mouse; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the plains harvest mouse …

Topeka Shiner (Notropis Topeka): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Topeka shiner (Notropis topeka) as a Tier I at-risk species of high priority for conservation. Some general management recommendations are made here regarding Topeka shiners; however, conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of the Topeka shiner that …

Comparative Phylogeography Of Central African Duikers Using Non-Invasive Sampling Methods, Stephan Ntie

LSU New Orleans Theses and Dissertations

The present study sets out to assess patterns of evolutionary diversification in central African duikers (subfamily Cephalophinae). The sampling strategy consisted of collecting geo-referenced duiker feces across 43 sites and seven countries. However, several challenges related to the use of non-invasive samples needed to be addressed prior to large scale DNA amplification. First, the best storage method for obtaining DNA from fecal samples needed to be established. Our study revealed that while silica is best for nuclear microsatellite analyses, RNAlater is the best storage medium for maximal mitochondrial amplification. Moreover, extracting DNA as early as possible always provided the …

A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope

STAR Program Research Presentations

This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …

Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen

STAR Program Research Presentations

Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …

Review Of Report On The “Biology And Stock Status Of Demersal Scalefish Indicator Species In The Gascoyne Coast Bioregion", Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Partial Depredations On Northern Bobwhite Nests, Susan Ellis-Felege, Anne Miller, Jonathan S. Burnam, Shane D. Wellendorf, D. Clay Sisson, William E. Palmer, John P. Carroll

School of Natural Resources: Faculty Publications

Partial clutch loss following a predation event is rarely studied in ground-nesting birds despite predation often being the leading cause of nest failure. Partial nest depredation occurs when predators attack but leave some eggs intact. Using continuous video monitoring, we documented a total of 372 initial predation events at nests of Northern Bobwhites (Colinus virginianus). From these, we observed a sample of partial nest pre-dation events (n=47). Partial predation events resulted in three outcomes: (1) The nest failed due to parental abandonment; (2) adult stayed with the nest, but clutch failed to hatch, usually due to further predation events; or …

Bacterial Community Structure Of Contrasting Soils Underlying Bornean Rain Forests: Inferences From Microarray And Next-Generation Sequencing Methods, Sabrina E. Russo, Ryan Legge, Karrie A. Weber, Eoin L. Brodie, Katherine C. Goldfarb, Andrew K. Benson, Sylvester Tan

School of Biological Sciences: Faculty Publications

Soil microbial diversity is vast, and we lack even basic understanding of how this diversity is distributed ecologically. Using pyrosequencing and microarray methods, we quantified the structure of bacterial communities in two contrasting soils underlying Bornean rain forest (clay and sandy loam) that differ markedly in soil properties, aboveground tree flora, and leaf litter decomposition rates. We found significant soil-related taxonomic and phylogenetic differences between communities that, due to their proximity, are independent of climate. Bacterial communities showed distinct compositional and taxon-abundance distributions that were significantly correlated with the structure of the overlying tree community. Richness of bacteria was greater …

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

A Comparison Of Current Anuran Monitoring Methods With Emphasis On The Accuracy Of Automatic Vocalization Detection Software, Jacob Douglas Eldridge

Masters Theses & Specialist Projects

Currently, a variety of methods are available to monitor anurans, and little standardization of methods exists. New methods to monitor anurans have become available over the past twenty years, including PVC pipe arrays used for tree frog capture and Automated Digital Recording Systems (ADRS) used to remotely monitor calling activity. In addition to ADRS, machine-learning computer software, automated vocalization recognition software (AVRS), has been developed to automatically detect vocalizations within digital sound recordings. The use of a combination of ADRS and AVRS shows the promise to reduce the number of people, time, and resources needed for an effective call survey …

Herpetofaunal Diversity At Yankee Hill State Lake And Wildlife Management Area, Lancaster County, Nebraska, Shelby Klima

Department of Environmental Studies: Undergraduate Student Theses

A survey for amphibians and reptiles was conducted in March through October 2011 at Yankee Hill Wildlife Management Area in Lancaster County, Nebraska. The survey was conducted using several different techniques including: visual and auditory encounters, artificial and natural cover objects, aquatic trappings and road surveys. A total of 145 individuals representing 12 species were identified including seven reptiles and five amphibians. A total of 48% of the species that may potentially occur on the site were encountered, all of which are common, widely distributed generalist species. Neither Graham’s Crayfish Snake nor the Massasauga, both target species for this survey, …

Review Of Rare: Portraits Of America's Endangered Species. By Joel Sartore., Jim Mason

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

Short of being in the presence of a creature, a really good photograph of one can also make a lasting impression. That is something RARE does compellingly, with exquisite portrait photos of 68 North American species that are dwindling dangerously in numbers or have recently recovered from the brink of extinction. Included are such Great Plains natives as the lesser prairie chicken, the interior least tern, and the black-footed ferret. All creatures were photographed with either a pure white or black background, but unconventional poses surprise the reader with each turn of the page, while creative framing and layout engage …

Extensive Clonal Spread And Extreme Longevity In Saw Palmetto, A Foundation Clonal Plant, Mizuki K. Takahashi, Liana M. Horner, Toshiro Kubota, Nathan A. Keller, Warren G. Abrahamson Ii

Faculty Journal Articles

The lack of effective tools have hampered our ability to assess the size, growth and ages of clonal plants. With Serenoa repens (saw palmetto) as a model, we introduce a novel analytical framework that integrates DNA fingerprinting and mathematical modelling to simulate growth and estimate ages of clonal plants. We also demonstrate the application of such life-history information of clonal plants to provide insight into management plans. Serenoa is an ecologically important foundation species in many Southeastern United States ecosystems; yet, many land managers consider Serenoa a troublesome invasive plant. Accordingly, management plans have been developed to reduce or eliminate …

Historical Diversification Of Montane Herpetofauna Within And Between The Sierras Of Mexico, Robert William Bryson Jr.

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Mexican highlands consist of four major mountain ranges spanning most of mainland Mexico. The evolutionary history of the Mexican highlands has been shaped by various geological and climatic events over the past several million years. The relative impacts of these historical events on diversification in montane taxa, however, remains uncertain. I used mitochondrial DNA data from three widely distributed species complexes of lizards as a model system to exemplify the potential roles of Neogene mountain formation and Quaternary climate change on timing and tempo of diversification across the Mexican highlands. My results suggested strong geographic partitioning of genetic variation …

Phylogeography Of A Vanishing North American Songbird: The Painted Bunting (Passerina Ciris), Connie Ann Herr

UNLV Theses, Dissertations, Professional Papers, and Capstones

Studies of genetic variation within and between species can provide insights into their evolutionary history as well as important information for conserving biodiversity. An understanding of population processes can assist in the conservation of biodiversity by contrasting current versus historical patterns, and the processes that have generated these patterns. Genetic differentiation often coincides with significant geological or climatic changes that have shaped the sizes and locations of the species geographic range and altered the connectivity between populations over time. Phylogenetic and population genetic analyses can also provide a statistical framework for the investigation of how human processes such as habitat …

Phylogeography Of The Reef Fish Cephalopholis Argus(Epinephelidae) Indicates Pleistocene Isolation Across The Indo-Pacific Barrier With Contemporary Overlap In The Coral Triangle, Michelle R. Gaither, Brian W. Bowen, Tiana-Rae Bordenave, Luiz A. Rocha, Stephen J. Newman, Juan A. Gomez, Lynne Van Herwerden, Matthew T. Craig

Fisheries Research Articles

Background

The Coral Triangle (CT), bounded by the Philippines, the Malay Peninsula, and New Guinea, is the epicenter of marine biodiversity. Hypotheses that explain the source of this rich biodiversity include 1) the center of origin, 2) the center of accumulation, and 3) the region of overlap. Here we contribute to the debate with a phylogeographic survey of a widely distributed reef fish, the Peacock Grouper (Cephalopholis argus; Epinephelidae) at 21 locations (N = 550) using DNA sequence data from mtDNA cytochrome b and two nuclear introns (gonadotropin-releasing hormone and S7 ribosomal protein).

Results

Population structure was significant …

Population Dynamics Of The Western Prickly Pear, Opuntia Macrorhiza (Cactaceae), Kathleen H. Keeler, Brigitte Tenhumberg

School of Biological Sciences: Faculty Publications

Although most cacti that have been studied are long lived, following individually marked plants in Boulder County, Colorado, for >7 years, we determined that average life span of Opuntia macrorhiza, the western prickly pear, is 3 years. A few individuals probably live >10 years. Vegetative reproduction, produced by rooting of cladodes, exceeded reproduction by germination and establishment from seeds. Both types of new recruits, from vegetative reproduction and seeds, had higher death rates than established plants. Size and frequency of flowering increased with age, although size both increased and decreased, sometimes dramatically, between years. Flowering correlated more strongly with …

Review Of Nature's Ghosts: Confronting Extinction From The Age Of Jefferson To The Age Of Ecology. By Mark V. Barrow, Jr., Peter A. Bednekoff

Great Plains Research: A Journal of Natural and Social Sciences (through 2013)

The saving of bison occupies a central place in Nature's Ghosts, but Mark Barrow's chronicle extends over a century both before and after. The story starts with Thomas Jefferson and fossils that came to be recognized as mastodons, mammoths, and giant ground sloths. "Jefferson and most of his contemporaries were certain that the natural world was orderly, static, and new." In such a worldview, extinction was unthinkable. Fossil evidence plus the historical extinctions of dodos, moas, and great auks forced reconsideration.

This book ranges across centuries and continents, and only a few parts of it are explicitly about the Great …

Match–Mismatch Regulation For Bluegill And Yellow Perch Larvae And Their Prey In Sandhill Lakes, Jeffrey C. Jolley, David W. Willis, Richard S. Holland

Nebraska Game and Parks Commission: Staff Research Publications

Food availability may regulate fish recruitment, both directly and indirectly. The availability of zooplankton, especially to newly hatched larvae, is thought to be crucial to their early growth and survival. We examined stomach contents of larval bluegill Lepomis macrochirus and yellow perch Perca flavescens in Pelican Lake and Cameron Lake, Nebraska, in 2004 and 2005. We also determined zooplankton availability and calculated prey selection using Chesson’s a. In addition, we investigated potential match–mismatch regulation of recruitment from 2004 to 2008. Bluegill positively selected copepod nauplii and Bosmina spp., and yellow perch often selected copepods. Abundant zooplankton populations were available for …

The Role Of Retrieval And Translocation In A Reintroduced Population Of Migratory Whooping Cranes, Sara E. Zimorski, Richard P. Urbanek

Proceedings of the North American Crane Workshop

Beginning in 2001, a reintroduction project was initiated using captive-reared whooping cranes (Grus americana) to establish a migratory flock in eastern North America. From May 2003 to August 2008, 23 of these birds were retrieved and translocated in 15 separate events. These individuals consisted of 14 cranes that had been led to Florida by ultralight aircraft on their first autumn migration (UL) and 9 cranes that had been directly released in autumn in Wisconsin (DAR). Of 104 (86 UL and 18 DAR) reintroduced individuals that eventually departed from their release location, 22% were later retrieved 1-3 times. Lake …

Home Range Size And Habitat Use Of Mississippi Sandhill Crane Colts, Scott G. Hereford, Tracy E. Grazia, Jereme N. Phillips, Glenn H. Olsen

Proceedings of the North American Crane Workshop

Recruitment in the endangered Mississippi sandhill crane (Grus canadensis pulla) is minimal, with the population of 110 sustained by an annual augmentation of captive-reared juveniles. Suitability of available habitat quality is likely involved in nesting success. Thousands of hectares of pine savanna were restored for crane use, but it is not clear how much was being used by crane families. We used 3-g subcutaneous transmitters to radio-tag 27 colts over 6 years from 1998 to 2002 and 2004 to determine home range and habitat use. Using a hand-held receiver, H-antenna and standard triangulation, location data were collected twice …

Three White Cranes, Two Flyways, One World, Sara Gavney Moore, Joan Garland, Zhang Juan, Maria Vladimirtseva

Proceedings of the North American Crane Workshop

The International Crane Foundation, together with Beijing Brooks Education Center in China and the Institute for Biological Problems of the Cryolithozone in Russia, is implementing a multi-year education project targeting local communities along the eastern crane flyways in the United States and East Asia. The education activities focus on the importance of wetlands, wildlife, and other natural resources from the perspective of local communities and are designed to enhance local leadership for education efforts. In the U.S. project activities are integrated with education programs centering on the eastern migratory whooping crane (Grus americana) population, integrating classroom activities and …

An Individual Whooping Crane's Family History, Karine Gil, Felipe Chavez-Ramirez, Brian W. Johns, Thomas V. Stehn, Robin Silva

Proceedings of the North American Crane Workshop

Between 1977 and 1988, 12 cohorts (134 individuals) of whooping cranes (Grus americana) were banded in Wood Buffalo National Park (WBNP, Canada-breeding ground) and monitored from Canada to Aransas National Wildlife Refuge (ANWR, Texas-wintering ground). During 2004, historical data on banded individuals was analyzed to estimate population parameters and life table of the wild population. This study used information from one of the few banded cranes known to be alive in 2008 since 1978. A genealogy tree (Family Tree Maker software) was developed from individual RwR-nil to represent its descendents and relatives, as well as a map (GIS) …