Population Biology Commons^™

Defining County-Level Terrestrial Rabies Freedom Using The Us National Rabies Surveillance System: Surveillance Data Analysis, Amber Kunkel, Gabriella Veytsel, Sarah C. Bonaparte, Haillie Meek, Xiaoyue Ma, Amy J. Davis, Jesse Bonwitt, Ryan M. Wallace

United States Department of Agriculture Wildlife Services: Staff Publications

Background: Rabies is a deadly zoonotic disease with nearly 100% fatality rate. In the United States, rabies virus persists in wildlife reservoirs, with occasional spillover into humans and domestic animals. The distribution of reservoir hosts in US counties plays an important role in public health decision-making, including the recommendation of lifesaving postexposure prophylaxis upon suspected rabies exposures. Furthermore, in surveillance data, it is difficult to discern whether counties have no cases reported because rabies was not present or because counties have an unreported rabies presence. These epizootics are monitored by the National Rabies Surveillance System (NRSS), to which approximately 130 …

Deriving Spatially Explicit Direct And Indirect Interaction Networks From Animal Movement Data, Anni Yang, Mark Q. Wilber, Kezia R. Manlove, Ryan S. Miller, Raoul Boughton, James Beasley, Joseph Northrup, Kurt C. Vercauteren, George Wittemyer, Kim Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous-time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale …

Long Term Changes In Aquaculture Influence Migration, Regional Abundance, And Distribution Of An Avian Species, Paul C. Burr, Brian S. Dorr, Jimmy L. Avery, Garrett M. Street, Bronson K. Strickland

United States Department of Agriculture Wildlife Services: Staff Publications

Agricultural development has been causing changes to the environment and the abundance and distribution of avian species. Agriculture is dynamic with changes in products occurring at large scales over relatively short time periods. The catfish aquaculture industry is one such agriculture industry that has undergone dramatic changes over the last 25 years. The double-crested cormorant (Nannopterum auritum) is a piscivorous bird that has an extensive history with the aquaculture industry of Mississippi due to its depredation of cultured catfish. A large-scale monitoring program began in 1989 to estimate the abundance and location of cormorants at every known roost in the …

Raccoon Rabies Control And Elimination In The Northeastern Usa And Southern Québec, Canada, Amy J. Davis, Marianne Gagnier, Ariane Massé, Kathleen M. Nelson, Jordona D. Kirby, Ryan Wallace, Xiaoyue Ma, Christine Fehlner-Gardiner, Richard B. Chipman, Amy Gilbert

United States Department of Agriculture Wildlife Services: Staff Publications

Rabies virus (RABV) is a deadly zoonosis that circulates in wild carnivore populations in North America. Intensive management within the USA and Canada has been conducted to control the spread of the raccoon (Procyon lotor) variant of RABV and work towards elimination. We examined RABV occurrence across the northeastern USA and southeastern Québec, Canada during 2008–2018 using a multi-method, dynamic occupancy model. Using a 10 km× 10 km grid overlaid on the landscape, we examined the probability that a grid cell was occupied with RABV and relationships with management activities (oral rabies vaccination (ORV) and trap-vaccinate-release efforts), habitat, neighbour effects …

Validation Of A Nutria (Myocastor Coypus) Environmental Dna Assay Highlights Considerations For Sampling Methodology, Anna M. Mangan, John A. Kronenberger, Ian H. Plummer

United States Department of Agriculture Wildlife Services: Staff Publications

Nutria (Myocastor coypus) is a semiaquatic rodent species that is invasive across multiple regions within the United States. Here, we evaluated a qPCR assay previously described for use in Japan for application across invasive populations in the United States. We also compared two environmental DNA sampling methodologies for this assay: field filtration of large volumes of water passed through filters versus direct sampling of small volumes of water. We validated assay specificity, generality, and sensitivity, compared assay performance between two independent laboratories, and successfully tested the assay in situ on a known wild population. The filtration method required …

Producers’ Perceptions Of Large Carnivores And Nonlethal Methods To Protect Livestock From Depredation: Findings From A Multistate Federal Initiative, Keith M. Carlisle, Hailey E. Ellis, Colorado State University, Alan D. Bright

United States Department of Agriculture Wildlife Services: Staff Publications

We examined livestock producers’ perceptions of wolves, grizzly bears, black bears, and mountain lions, as well as their experiences with using nonlethal methods to protect livestock from depredation. All producers in the study received nonlethal predator management assistance in 2020 from USDA-APHIS-Wildlife Services (“WS”) pursuant to a federally funded initiative focused on the use of nonlethal methods to protect livestock. Such methods included assistance from range riders (i.e., individuals who monitor livestock and carnivores), fladry (i.e., flags hung from rope that serve as a repellent), and other audio/visual deterrents (e.g., Foxlights). The producers did not specifically seek nonlethal assistance from …

Distribution Of Baylisascaris Procyonis In Raccoons (Procyon Lotor) In Florida, Usa, Mark W. Cunningham, Daniel P. Wolf, Katherine A. Sayler, Michael Milleson, Brittany Bankovich, Paul Schueller, Betsy S. Haley, Savannah Stura, Michael J. Yabsley

United States Department of Agriculture Wildlife Services: Staff Publications

Baylisascaris procyonis, or raccoon roundworm, is an intestinal nematode parasite of raccoons (Procyon lotor) that is important to public and wildlife health. Historically, the parasite was uncommon in the southeastern US; however, the range of B. procyonis has expanded to include Florida, US. From 2010 to 2016, we opportunistically sampled 1,030 raccoons statewide. The overall prevalence was 3.7% (95% confidence interval=2.5–4.8%) of sampled individuals, and infection intensity ranged from 1 to 48 (mean±standard deviation 9.9±4.0). We found raccoon roundworm in 9/56 (16%) counties sampled, and the percent positive ranged from 1.1% to 13.3% of specimens collected per …

An Ode To Owls: Review Of What An Owl Knows: The New Science Of The World’S Most Enigmatic Birds By Jennifer Ackerman, Alan B. Franklin

United States Department of Agriculture Wildlife Services: Staff Publications

Owls are mysterious creatures, mainly because we humans hardly ever encounter them. They are mostly nocturnal, are silent in their flight, and tend to unnerve us with their ghostly and sometimes quavering vocalizations. There have been numerous books on the natural history of owls written for nonexperts, but Jennifer Ackerman’s What an Owl Knows takes a novel tack, blending natural history and scientific discovery with a discussion of recent technological innovations. The result is a fascinating read on how scientists are beginning to better understand the lives and ecology of these secretive and rarely visible birds.

The book’s nine chapters …

Tourism‑Supported Working Lands Sustain A Growing Jaguar Population In The Colombian Llanos, Matthew Hyde, Esteban Payán, Jorge Barragan, Diana Stasiukynas, Sanmantha Rincón, William L. Kendall, Jerónimo Rodríguez, Kevin R. Crooks, Stewart W. Breck, Valerie Boron

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding large carnivore demography on human-dominated lands is a priority to inform conservation strategies, yet few studies examine long-term trends. Jaguars (Panthera onca) are one such species whose population trends and survival rates remain unknown across working lands. We integrated nine years of camera trap data and tourist photos to estimate jaguar density, survival, abundance, and probability of tourist sightings on a working ranch and tourism destination in Colombia. We found that abundance increased from five individuals in 2014 to 28 in 2022, and density increased from 1.88 ± 0.87 per 100 km² in 2014 to 3.80 …

Science‐Driven Guidelines Needed To Better Manage And Conserve Black Vultures In North America, Scott A. Rush, Neil J. Buckley, Patrick A. Zollner, Bryan M. Kluever, Brooke Mcwherter, Grant C. Burcham, Zhao Ma, Marian L. Wahl, Adrián Naveda‐Rodríguez

United States Department of Agriculture Wildlife Services: Staff Publications

Black vultures (Coragyps atratus) provide invaluable ecological services through disposal of carrion and the mobilization of energy within the landscape. Human‐wildlife conflicts with these birds have increased as populations have grown and the species distribution has expanded. We identify critical science needed to understand conflict between black vultures and humans to inform effective management of this species in North America. It is imperative that diagnostic criteria supporting the identification of the impacts of black vulture on livestock be standardized and verified. Management guidelines that take these criteria into account will enable reduction in the potential for black‐vulture‐farmer conflict …

The Impact Of The Covid‑19 Pandemic On Wildlife–Aircraft Collisions At Us Airports, Levi Altringer, Sophie C. Mckee, Jason D. Kougher, Michael J. Begier, Stephanie A. Shwiff

United States Department of Agriculture Wildlife Services: Staff Publications

Exploiting unprecedented reductions in aircraft movements caused by the COVID-19 pandemic, we investigated the relationship between air traffic volume and the frequency of wildlife-aircraft collisions, or wildlife strikes, at the 50 largest airports in the United States. During the COVID- 19 months of 2020 (March–December), both air traffic volume and the absolute number of wildlife strikes were reduced. The net effect of these two movements, however, was an increase in the wildlife strike rate from May 2020–September 2020. This increase was found to be most pronounced at airports with larger relative declines in air traffic volume. We concluded that the …

Fertility Control Options For Management Of Free-Roaming Horse Populations, Ursula S. Bechert, John W. Turner Jr., Dan L. Baker, Douglas C. Eckery, Jason E. Bruemmer, Candace C. Lyman, Tulio M. Prado, Sarah B. King, Mark A. Fraker

United States Department of Agriculture Wildlife Services: Staff Publications

The management of free-roaming horses (Equus ferus) and burros (E. asinus) in the United States has been referred to as a “wicked problem” because, although there are population control options, societal values will ultimately determine what is acceptable and what is not. In the United States, free-roaming equids are managed by different types of organizations and agencies, and the landscapes that these animals inhabit vary widely in terms of access, size, topography, climate, natural resources, flora, and fauna. This landscape diversity, coupled with contemporary socioeconomic and political environments, means that adaptive management practices are needed to regulate these free-roaming populations. …

Texas Hunters' Attitudes Toward Wild Pigs (Sus Scrofa) And Their Management: An Applied Approach For Wildlife Managers, Lauren M. Jaebker, Alan D. Bright, Hailey E. Ellis, John M. Tomeček, Maureen G. Frank, Rachel L. Connally, Stephanie A. Shwiff, Keith M. Carlisle

United States Department of Agriculture Wildlife Services: Staff Publications

Choosing and executing a wild pig management strategy is often a considerable challenge for wildlife managers due to the wide variety of potential strategies and stakeholder preferences. Our research aims to understand management preferences for and tolerance of wild pigs among Texas resident hunters within 8 managerial districts of Texas. We applied the Potential for Conflict Index (PCI2) to estimate potential management preference conflicts within each district. From 24,201 questionnaires completed in 2019, we found that, on average, 74% of respondents across all management actions in each district were found to be acceptable. Resident respondents were overall intolerant of wild …

Differences In Feeder Visitation By Invasive Rose-Ringed Parakeets (Psittacula Krameri) Between Hawaiian Islands, Steven C. Hess, Jane Anderson, Eric A. Tillman, William P. Bukoski, Aaron B. Shiels, Page Klug, Shane R. Siers, Bryan M. Kluever

United States Department of Agriculture Wildlife Services: Staff Publications

Rose-ringed parakeets (Psittacula krameri; parakeets) are among the most invasive bird species worldwide. In their introduced range, populations of this species have caused negative effects on native species, natural environments, economies, and human safety. Lethal population management has been complicated by the intelligence of the birds, as they quickly alter behavior to avoid risks. Further, lethal control programs have been halted due to public opposition, as parakeets are considered to be charismatic by animal welfare advocates. The contraceptive DiazaCon has been demonstrated to effectively reduce fertility in captive parakeets. In field applications, any chemical control agents (e.g., toxicants or contraceptives) …

Commonly Collected Thermal Performance Data Can Inform Species Distributions In A Data‑Limited Invader, Natalie M. Claunch, Colin M. Goodman, Bryan M. Kluever, Narayani Barve, Robert P. Guralnick, Christina M. Romagosa

United States Department of Agriculture Wildlife Services: Staff Publications

Predicting potential distributions of species in new areas is challenging. Physiological data can improve interpretation of predicted distributions and can be used in directed distribution models. Nonnative species provide useful case studies. Panther chameleons (Furcifer pardalis) are native to Madagascar and have established populations in Florida, USA, but standard correlative distribution modeling predicts no suitable habitat for F. pardalis there. We evaluated commonly collected thermal traits– thermal performance, tolerance, and preference—of F. pardalis and the acclimatization potential of these traits during exposure to naturally-occurring environmental conditions in North Central Florida. Though we observed temperature-dependent thermal performance, chameleons maintained …

Rabbit Hemorrhagic Disease, J. Jeffrey Root, Tom Gidlewski

United States Department of Agriculture Wildlife Services: Staff Publications

The étiologie agents of rabbit hemorrhagic disease (RHD) are rabbit hemorrhagic disease viruses (RHDVs). These highly contagious viruses are members of the viral family Caliciviridae, genus Lagovinis (Schoch et al. 2020) and negatively affect various lagomorph species, often causing high mortality rates in select taxa. While other lagomorph-associated caliciviruses exist, we focus on RHDV (aJso known ais classical RHDV including subtype RHDVa) and RHDV2 (also know as subtype RHDVb and RHDV serotype 2) within this chapter, with a major emphasis on recent outbreaks of RHDV2 in wildlife in North America. Although the bulk of the research associated with environmental persistence, …

Raccoons (Procyon Lotor) Show Higher Trypanosoma Cruzi Detection Rates Than Virginia Opossums (Didelphis Virginiana) In South Carolina, Usa, David A. Bernasconi, Madison L. Miller, Jacob E. Hill, Pooja Gupta, Richard Chipman, Amy Gilbert, Olin E. Rhodes Jr., Guha Dharmarajan

United States Department of Agriculture Wildlife Services: Staff Publications

Chagas disease, a significant public health concern in the Americas, is caused by a protozoan parasite, Trypanosoma cruzi. The life cycle of T. cruzi involves kissing bugs (Triatoma spp.) functioning as vectors and mammalian species serving as hosts. Raccoons (Procyon lotor) and opossums (Didelphis virginiana) have been identified as important reservoir species in the life cycle of T. cruzi, but prevalence in both species in the southeastern United States is currently understudied. We quantified T. cruzi prevalence in these two key reservoir species across our study area in South Carolina, USA, and …

Genomic Regions Associated With Pseudorabies Virus Infection Status In Naturally Infected Feral Swine (Sus Scrofa), Courtney F. Bowden, Jennifer N. Kiser, Ryan S. Miller, Alexandra C. Buckley, Paola M. Boggiatto, Rachael M. Giglio, Vienna R. Brown, Dorian Garrick, Holly L. Neibergs, Antoinette J. Piaggio, Scott E. Speidel, Timothy J. Smyser

United States Department of Agriculture Wildlife Services: Staff Publications

Pseudorabies virus (PRV)—the causative agent of Aujeszky’s disease—was eliminated from commercial pig production herds in the United States (US) in 2004; however, PRV remains endemic among invasive feral swine (Sus scrofa). The circulation of PRV among abundant, widespread feral swine populations poses a sustained risk for disease spillover to production herds. Risk–based surveillance has been successfully implemented for PRV in feral swine populations in the US. However, understanding the role of host genetics in infection status may offer new insights into the epidemiology and disease dynamics of PRV that can be applied to management strategies. Genetic mechanisms underlying …

Estimating Northern Spotted Owl (Strix Occidentalis Caurina) Pair Detection Probabilities Based On Call-Back Surveys Associated With Long-Term Mark-Recapture Studies, 1993–2018, Katie M. Dugger, Alan B. Franklin, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven A. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lapmphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina; hereinafter NSO) was listed as “threatened” under the Endangered Species Act in 1990 and population declines have continued since that listing. Given the species’ protected status, any proposed activities on Federal lands that might impact NSO require consultation with U.S. Fish and Wildlife Service and part of that consultation often includes surveys to determine presence and occupancy status of the species in the proposed activity area. The objective of this report is to present study-area specific estimates of the probability of detection for NSO pairs from twelve 2-week seasonal survey periods …

Changes In Fecal Glucocorticoid Metabolites In Captive Coyotes (Canis Latrans): Influence Of Gender, Time, And Reproductive Status, Eric M. Gese, Patricia A. Terletzky, Cole A. Bleke, Erika T. Stevenson, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Simple summary

Biologists have long considered producing offspring a demanding time in the life of any animal, with reproducing and raising offspring being physiologically stressful. We examined whether breeding and producing pups was more stressful than other life-history stages among captive coyotes (Canis latrans) using fecal sampling and subsequent assays for glucocorticoid metabolites. Using 12 pairs of coyotes (five pairs produced pups, seven pairs did not), we examined fecal glucocorticoid metabolites (fGCM) covering 11 biological time periods for one year. We found high individual variability among both females and males with no apparent statistical effect of reproduction on …

Differential Canid Predation Of Translocated Juvenile Desert Tortoises (Gopherus Agassizii) Using Chemical Signature Differences, Derek B. Hall, Bruce A. Kimball, Jennifer M. Germano, Eric M. Gese, Jeanette A. Perry

United States Department of Agriculture Wildlife Services: Staff Publications

Differential predation was observed in a population of 59 translocated juvenile desert tortoises (Gopherus agassizii) of known sex during a juvenile translocation survival study between September 2012 and November 2017. The main source of mortality was attributed to coyote (Canis latrans) and kit fox (Vulpes macrotis) predation. Predation was skewed with higher female mortality than male mortality. We tested the hypothesis that juvenile females smell different than males, which leads to increased canid predation. We also explored differences in chemical signatures of resident adult female and male desert tortoises. We collected oral, cloacal, and …

Range-Wide Sources Of Variation In Reproductive Rates Of Northern Spotted Owls, Jeremy T. Rockweit, Julianna M. Jenkins, James E. Hines, James D. Nichols, Katie M. Dugger, Alan B. Franklin, Peter C. Carlson, William L. Kendall, Damon B. Lesmeister, Christopher Mccafferty, Steven H. Ackers, L. Steven Andrews, Larissa L. Bailey, Jesse Burgher, Kenneth P. Burnham, Tara Chestnut, Mary M. Conner, Raymond J. Davis, Krista E. Dilione, Eric D. Forsman, Elizabeth M. Glenn, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, David W. Lamphear, Trent L. Mcdonald, Janice A. Reid, Carl J. Schwarz, David C. Simon, Stan G. Sovern, James K. Swingle, J. David Wiens, Heather Wise, Charles B. Yackulic

United States Department of Agriculture Wildlife Services: Staff Publications

We conducted a range-wide investigation of the dynamics of site-level reproductive rate of northern spotted owls using survey data from 11 study areas across the subspecies geographic range collected during 1993–2018. Our analytical approach accounted for imperfect detection of owl pairs and misclassification of successful reproduction (i.e., at least one young fledged) and contributed further insights into northern spotted owl population ecology and dynamics. Both nondetection and state misclassification were important, especially because factors affecting these sources of error also affected focal ecological parameters. Annual probabilities of site occupancy were greatest at sites with successful reproduction in the previous year …

Demographic And Functional Responses Of Kit Foxes To Changes In Prey Abundance, Ashley E. Hodge, Eric M. Gese, Bryan M. Kluever

United States Department of Agriculture Wildlife Services: Staff Publications

Many carnivores exhibit demographic and functional responses to changes in prey abundance. Demographic responses often include changes in population size, litter size, and recruitment of young into the adult population. Functional feeding responses are commonly reported for many carnivore species. We investigated demographic and functional responses of kit foxes (Vulpes macrotis Merriam, 1888) to changes in prey abundance during 2010–2013 in western Utah, USA. Between 2010 and 2013, litter size averaged 3.9 (±1.4) pups/litter. Survival rates of kit fox pups were 0.07, 0.01, 0.46, and 0.16, respectively, and there was a correlation between pup survival rates and rodent abundance; …

Comparison Of An Antioxidant Source And Antioxidant Plus Bcaa On Athletic Performance And Post Exercise Recovery Of Horses, Emily Kent, Stephen J. Coloman, Jason E. Bruemmer, Renan Regatieri Casagrande, Christine Levihn, Grace Romo, Kevin Herkelman, Tanja Hess

United States Department of Agriculture Wildlife Services: Staff Publications

Antioxidant supplementation decreases postexercise oxidative stress but could also decrease muscle pro- tein synthesis. This study compared the effects of three diets: low antioxidant (control, CON), high an- tioxidant (AO), and branched-chain amino acid high antioxidant (BCAO) supplementation on postexercise protein synthesis and oxidative stress. We hypothesized that supplementing antioxidants with branched- chain amino acids(BCAA) would reduce oxidative stress without hindering muscle protein synthesis. Eigh- teen mixed-breed polo horses (11 mares and 7 geldings, with age range between 5 and 18 years, were on CON diet for 30 days (from day -45 until day 0) and then were assigned to …

High Winds And Melting Sea Ice Trigger Landward Movement In A Polar Bear Population Of Concern, Annie Kellner, Todd C. Atwood, David C. Douglas, Stewart W. Breck, Colorado State University - Fort Collins

United States Department of Agriculture Wildlife Services: Staff Publications

Some animal species are responding to climate change by altering the timing of events like mating and migration. Such behavioral plasticity can be adaptive, but it is not always. Polar bears (Ursus maritimus) from the southern Beaufort Sea subpopulation have mostly remained on ice year-round, but as the climate warms and summer sea ice declines, a growing proportion of the subpopulation is summering ashore. The triggers of this novel behavior are not well understood. Our study uses a parametric time-to-event model to test whether biological and/or time-varying environmental variables thought to influence polar bear movement and habitat selection …

Space Use And Movements Of Southeastern Breeding Double-Crested Cormorants (Nannopterum Auritum) In The United States, Leah L.K. Moran, Brian S. Dorr, Katie C. Hanson-Dorr, R. J. Moore, Scott A. Rush

United States Department of Agriculture Wildlife Services: Staff Publications

Abstract: Seasonal movements of Double-crested Cormorants (Nannopterum auritum) have been studied at breeding and wintering sites in the southeastern United States, but little information exists on the movements of these birds within and from their southern breeding sites in lacustrine systems. Since 2001, cormorants have established nesting colonies on islands in Guntersville Reservoir in Alabama, USA. Following the movements of tagged cormorants using satellite telemetry, we found that the mean home range during the 2017 breeding season (May–August) was 41.76 km², with a core use area of 6.36 km². The mean home range used …

Behavior Of Wild Pigs Toward Conspecific Carcasses: Implications For Disease Transmission In A Hot, Semiarid Climate, Samantha Leivers, Tyler Campbell, Michael J. Bodenchuk, John Tomeĉek

United States Department of Agriculture Wildlife Services: Staff Publications

Wild pigs (Sus scrofa) are a prolific, invasive species in the United States of America and act as vectors for many pathogens. An emerging pathogen of concern to the USA is African swine fever (ASF), a deadly viral disease affecting swine that is endemic to Africa and has spread to parts of Europe, Asia, and the Caribbean. ASF affects both wild and domesticated pigs and can be transmitted via several avenues, including interactions between and consumption of dead pigs by their live conspecifics. As wild pigs are considered a serious threat in the transmission of ASF, understanding the …

H7n9 Influenza A Virus Transmission In A Multispecies Barnyard Model, Angela M. Bosco-Lauth, Anna Rodriguez, Rachel M. Maison, Stephanie M. Porter, J. Jeffrey Root

United States Department of Agriculture Wildlife Services: Staff Publications

Influenza A viruses are a diverse group of pathogens that have been responsible for millions of human and avian deaths throughout history. Here, we illustrate the transmission potential of H7N9 influenza A virus between Coturnix quail (Coturnix sp.), domestic ducks (Anas platyrhynchos domesticus), chickens (Gallus gallus domesticus), and house sparrows (Passer domesticus) co-housed in an artificial barnyard setting. In each of four replicates, individuals from a single species were infected with the virus. Quail shed virus orally and were a source of infection for both chickens and ducks. Infected chickens transmitted the virus to quail but not to ducks or …

Genomic Analyses Of Gray Fox Lineages Suggest Ancient Divergence And Secondary Contact In The Southern Great Plains, Elizabeth M. Kierepka, Sophie Preckler-Quisquater, Dawn M. Reding, Antoinette Piaggio, Seth P.D. Riley, Benjamin N. Sacks

United States Department of Agriculture Wildlife Services: Staff Publications

The gray fox (Urocyon cinereoargenteus) lineage diverged from all other extant canids at their most basal node and is restricted to the Americas. Previous mitochondrial analysis from coastal populations identified deeply divergent (up to 1 Mya) eastern and western lineages that predate most intraspecific splits in carnivores. We conducted genotyping by sequencing and mitochondrial analysis on gray foxes sampled across North America to determine geographic concordance between nuclear and mitochondrial contact zones and divergence times. We also estimated the admixture within the contact zone between eastern and western gray foxes based on nuclear DNA. Both datasets confirmed that …

Writing Statistical Methods For Ecologists, Amy J. Davis, Shannon Kay

United States Department of Agriculture Wildlife Services: Staff Publications

The Methods section is a key component of any ecology research publication containing detailed information on how the data were collected and analyzed. However, descriptions of which statistical methods were used and how they were applied can substantially vary and may not provide enough information for the analyses to be reproducible. Computational and statistical programming advances have allowed ecological researchers without a strong statistical or mathematical background to access and use increasingly complex statistical methods. Thus, statistical methods are written by and need to be accessible to researchers across a range of quantitative expertise. Poorly written Methods sections can incorrectly …