Population Biology Commons^™

Genomic Perspectives On Amphibian Evolution Across Multiple Phylogenetic Scales, Paul Michael Hime

Theses and Dissertations--Biology

Genomes provide windows into the evolutionary histories of species. The recent accessibility of genome-scale data in non-model organisms and the proliferation of powerful statistical models are now providing unprecedented opportunities to uncover evolutionary relationships and to test hypotheses about the processes that generate and maintain biodiversity. This dissertation work reveals shallow-scale species boundaries and population genetic structure in two imperiled groups of salamanders and demonstrates that the number and information content of genomic regions used in species delimitation exert strong effects on the resulting inferences. Genome scans are employed to test hypotheses about the mechanisms of genetic sex determination in …

Biotic Interchange Has Structured Western Hemisphere Mammal Communities, Danielle Fraser, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Aim.— Many hypotheses posit that species-rich tropical communities are dominated by speciesspecies interactions, apparent as competitive exclusion or character displacement, whereas species-poor temperate communities are dominated by species-environment interactions. Recent studies demonstrate a strong influence of macroevolutionary and biogeographic factors. We simultaneously test for the effects of species interactions, climate, and biotic interchange on Western Hemisphere mammal communities using a phylogenetic and functional diversity approach.

Location.— Western Hemisphere.

Time period.— Modern

Major taxa studied.— Mammalia

Methods.— Using Western Hemisphere mammal distributional and body mass data, we calculate body mass dispersion, phylogenetic diversity (Net Relatedness Index), and assemblage-averaged rates of co-occurrence …

Assessment Of A Channel Catfish Population In A Large Open River System, A. J. Blank, M. J. Hamel, Jonathan J. Spurgeon, Mark A. Pegg

School of Natural Resources: Faculty Publications

Estimates of dynamic rate functions for riverine channel catfish, Ictalurus punctatus (Rafinesque), populations are limited. The open nature and inherent difficulty in sampling riverine environments and the propensity for dispersal of channel catfish impede estimation of population variables. However, contemporary population models (i.e. robust design models) can incorporate the open nature of these systems. The purpose of this study was to determine channel catfish population abundance, survival and size structure and to characterize growth in the lower Platte River, Nebraska, USA. Annual survival estimates of adult channel catfish were 13%–49%, and channel catfish abundance estimates ranged from 8,281 to 24,261 …

A Comparative Analysis Of Geometric Morphometrics Across Two Pseudemys Turtle Species In East Central Virginia, Kristin C. Dillard

Theses and Dissertations

The phylogeny of the turtle genus Pseudemys is poorly understood. In Virginia, many turtles have been found with indicator traits of both eastern river cooters (Pseudemys concinna concinna) and northern red bellied cooters (Pseudemys rubriventris). This study explores morphological evidence for hybridization between the two species across three riverine sites in east central Virginia.

Museum voucher groups for each species were analyzed for relative shell height and plastron length. The shape of the plastral scutes and upper jaw were analyzed using landmark-based morphometric software. These metrics were compared with measurements taken from 188 field-caught Pseudemys specimens. …

A Population Genetic Investigation Of The Reticulated Flatwoods Salamander (Ambystoma Bishopi) On Eglin Air Force Base, Alexander S. Wendt

College of Graduate Studies: Theses & Dissertations

The reticulated flatwoods salamander (RFS) is an endangered salamander with a unique life history. One of the largest known, best studied refuges for RFS is found on Eglin Air Force Base, and these RFS have been sampled and managed extensively since 2010. My thesis seeks to better understand RFS by using genetic techniques to address several unknowns, including: 1) determining the population structuring of RFS and the manageable units for species conservation, 2) estimating the size and status of populations, 3) understanding dispersal of RFS and factors that influence this, 4) exploring the breeding biology and recruitment patterns of RFS …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Distribution, Abundance, And Migration Timing Of Greater And Lesser Sandhill Cranes Wintering In The Sacramento–San Joaquin River Delta Region Of California, Gary L. Ivey, Bruce D. Dugger, Caroline P. Herziger, Michael L. Casazza, Joseph P. Fleskes

Proceedings of the North American Crane Workshop

The Sacramento-San Joaquin River Delta region of California (hereafter, Delta region) is an important wintering region for the Central Valley Population of greater sandhill cranes (Grus canadensis tabida) and lesser sandhill cranes (G. c. canadensis), but basic information about the ecology of these birds is lacking to design a biologically sound conservation strategy. During the winters of 2007-08 and 2008-09, we conducted roost counts, roadside surveys, aerial surveys, and tracked radio-marked birds to define the geographic area used by sandhill cranes in the Delta region, document migration chronology, and estimate subspecies-specific abundance. Radio-marked sandhill cranes arrived in our study area …

Integrated Fisheries Management Resource Report Pearl Oyster (Pinctada Maxima) Resource, Department Of Fisheries

Fisheries Management Papers

This report has been prepared to provide the Intergrated Fisheries Allocation Advisory Committee (Allocation Committee) with a summarised, factual account of the nature and status of the Pinctada maxima (P. maxima) pearl oyster resource and current and historical trends in its use and conservation.

Policy On The Application Of Fish Size Limits In Western Australia, Department Of Fisheries

Fisheries Management Papers

No abstract provided.

Monk Parakeets, Michael L. Avery, James R. Lindsay

Wildlife Damage Management Technical Series

Since their introduction to the United States in the 1960s, monk parakeets (Myiopsitta monachus) have thrived (Figure 1). Until recently, annual Christmas Bird Count data have shown the population to be increasing exponentially. In the U.S., monk parakeets are an urban and suburban species with few natural predators, diseases or other factors limiting their population growth. They exploit backyard bird feeders and non-native ornamental plants for food. Monk parakeets often construct nests on man-made structures, such as electric utility facilities and cell phone towers. Because the birds build and maintain nests throughout the year, management of parakeet populations …

Using Citizen Science And Remote Sensing Data To Model Hummingbird Migration, Sarah R. Supp, Laura J. Graham, Frank A. La Sorte, Tina A. Cormier, Gil Bohrer, Donald Powers, Susan Wethington, Kevin Guay, Patrick Jantz, Scott Goetz, Catherine H. Graham

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Harpy Eagle (Harpia Harpyja) Conservation: Juvenile Behavior And Diet At A Nest Near Pijibasal, Darien, Hannah Rodgers

Independent Study Project (ISP) Collection

The Harpy Eagle (Harpia harpyja), the largest and most powerful bird of prey in the Americas, is declining throughout its range in Neotropical forests. Hunting and deforestation threaten populations in the most important remaining eagle habitat in Central America, the Darien province of Panama. These eagles may have the longest postfledging juvenile dependency of any raptor, though juvenile behavior during this period is poorly studied. This study monitored an 11-month-old juvenile for 7 days at a nest near the indigenous community of Pijibasal in order to study behavior and diet. Researchers recorded the juvenile’s location and behavior, studied prey remains …

Uncommon/Rare Avian Species Decline And Extirpation In Nested Assemblages Of Northeastern Illinois Wetlands, James M. Mcaley

All Capstone Projects

Baisa found that avian assemblages are highly nested in palustrine emergent wetlands in northeastern Illinois. He measured nestedness by constructing a binary matrix of species presence and absence across sites. Nestedness was also quantified using the Mann-Whitney U-test in his study.

The goal of this project was to sample the wetlands as Baisa had done in his study. By doing so, we will have 2 sampling events, approximately 10 years apart. Nestedness of the wetland communities will be checked, and data compared to that of Baisa. Emergent wetlands in northeastern Illinois were found by Baisa to contain highly nested avian …

Cedar Waxwings, Michael L. Avery, Anthony G. Duffiney

Wildlife Damage Management Technical Series

Prevention and control of cedar waxwing (Bombycilla cedrorum) damage to small fruits such as blueberry, cherry, and strawberry is vexing to growers in many parts of the United States. Cedar waxwings (Figure 1) travel in flocks and descend in large numbers on berry crops, especially during winter and migration. In short feeding bouts, waxwings eat, peck, or knock substantial amounts of fruit from the plants. These frugivores are difficult to discourage once they become established at a given location. Harassment early and often using pyrotechnics or other sudden noisemakers can help prevent flocks from being established. The most effective preventative …

Rabbit Control: Bait Stations, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity factsheets

This factsheet provides information on using bait stations for rabbit control.

Biological control agents such as the myxoma virus (myxomatosis), and rabbit haemorraghic disease virus (RHDV) or rabbit calicivirus disease, will not provide ‘magic bullets’ for reducing the impact of rabbits on agricultural production and the environment. Biological agents are more effective when they form part of an integrated approach to rabbit control. An integrated approach should use all available control options, including biological control, the use of vertebrate pesticides, shooting, and trapping programs. Control programs are most effective when they include the greatest number of properties possible (that is, …

A Novel Qtl Associated With Dwarf Bunt Resistance In Idaho 444 Winter Wheat, Jianli Chen, Mary J. Guttieri, Junli Zhang, David Hole, Edward Souza, Blair Goates

Green Canyon Environmental Research Area, Logan Utah

Dwarf bunt [Tilletia controversa J.G. Kühn [as ‘contraversa’], in Rabenhorst, Hedwigia 13: 188 (1874)] is a destructive disease of wheat (Triticum aestivum L.) that reduces grain yield and quality. A number of distinct genes conferring resistance to dwarf bunt have been used by breeding programs for nearly 100 years. However, few markers were identified that can be used in selection of dwarf bunt resistance. A recombinant inbred line (RIL) population derived from the bunt-resistant germplasm, Idaho 444 (IDO444), and the susceptible cultivar, Rio Blanco, was evaluated for phenotypic reaction to dwarf bunt inoculation in four trials in …

Population Characteristics Of Human-Commensal Rodents Present In Households From Mérida, Yucatán, México, Jesús Alonso Panti-May, Silvia F. Hernández-Betancourt, Marco A. Torres-Castro, Carlos Machaín-Williams, Nohemi Cigarroa-Toledo, Lorenzo Sodá, Gabriela López-Manzanero, Josué R. Meza-Sulú, Victor M. Vidal-Martínez

MANTER: Journal of Parasite Biodiversity

Anthropocommensal rodents live in close proximity to humans in many habitats around the world. They are a threat to public health because of the pathogens they carry. Recent studies in Mérida, Yucatán, México, have shown that commensal rodents harbor potential zoonotic pathogens such as bacteria, helminths, and viruses. In this study, we describe reproductive and demographic parameters of house mice and black rats present in households from Mérida, Yucatán, México, a municipality located in a tropical region in southern México. Rodents were trapped in 142 households within the municipality of Mérida from 2011 to 2014. A total of 832 rodents …

Earlier Nesting By A Predatory Bird Is Associated With Human Adaptations To Climate Change, Shawn Heath Smith

Boise State University Theses and Dissertations

Advancing growing seasons and prey abundance drive earlier breeding in dietary specialists because, ultimately, consumers benefit by timing their reproduction to coincide with peak prey abundance. The selective pressure to breed earlier may be lower for species that forage on diverse prey items that vary in abundance both spatially and temporally. The selective pressure may be reduced further if predators have access to a mosaic of habitats, each of which having different shifts in growing seasons. We studied whether earlier breeding of a predatory generalist, the American kestrel (Falco sparverius) nesting in a mosaic of habitat types was …

Blackbirds, Richard A. Dolbeer, George M. Linz

Wildlife Damage Management Technical Series

The term blackbird loosely refers to a diverse group of about 10 species of North American birds that belong to the avian family Icteridae. The most common species include: Red-winged blackbird (Agelaius phoeniceus) Common grackle (Quiscalus quiscula) Great-tailed grackle (Quiscalus mexicanus) Brown-headed cowbird (Molothrus ater) Yellow-headed blackbird (Xanthocephalus xanthocephalus) Brewer’s blackbird (Euphagus cyanocephalus) Rusty blackbird (Euphagus carolinus) In addition to blackbirds, this family includes orioles, meadowlarks, and bobolinks.

Human-Wildlife Conflicts 1 Damage Identification 3 Management Methods 4 Economics 7 Species Overview 8 Legal Status 11 Glossary …

Double-Crested Cormorants, Brian S. Dorr, Kristi L. Sullivan, Paul D. Curtis, Richard Chipman, Russell D. Mccullough

Wildlife Damage Management Technical Series

The history of conflict between double-crested cormorants (Figure 1) and human interest in fisheries is long and convoluted. Following a low point in the 1970s, populations of cormorants expanded in North America, as did concerns about impacts on fisheries. By the late 1990s, natural resource agencies in 27 states reported losses of free-ranging fish stocks to cormorants. Agencies in 10 states, ranging from the Southwest to the Northeast, considered cormorant predation to be of moderate to major concern to fishery management.

Overall, double-crested cormorants are not major consumers of commercial and sportfish species. However, exceptions have been recorded at specific …

Bird Dispersal Techniques, Thomas W. Seamans, Allen L. Gosser

Wildlife Damage Management Technical Series

Conflicts between humans and birds likely have existed since agricultural practices began. Paintings from ancient Greek, Egyptian, and Roman civilizations depict birds attacking crops. In Great Britain, recording of efforts at reducing bird damage began in the 1400s, with books on bird control written in the 1600s. Even so, the problem persists. Avian damage to crops remains an issue today, but we also are concerned with damage to homes, businesses, and aircraft, and the possibility of disease transmission from birds to humans or livestock. Successful dispersal techniques should capitalize on bird sensory capabilities. If birds cannot perceive the dispersal technique, …

Geese, Ducks And Coots, John L. Cummings

Wildlife Damage Management Technical Series

Canada geese, snow geese, ducks, and American coots all have been implicated in agricultural crop and turf damage. Canada geese and snow geese that graze on winter wheat and rye crops can reduce subsequent grain and vegetative yields. Canada geese also cause serious damage to sprouting soybeans in spring and to standing cornfields in the autumn. The most common damage to agricultural resources associated with geese results from consumption of crops. Other impacts involve unacceptable accumulations of feces in pastures, trampling of emerging crops, and increased erosion and runoff from fields where the cover crop has been grazed. Canada geese …

Development Of Genomic Resources For The Evaluation Of Red Snapper, An Emerging Species Candidate For Marine Aquaculture And Stock Enhancement, Adrienne Elise Norrell

Master's Theses

The northern red snapper (Lutjanus campechanus) is a highly targeted reef fish candidate for marine aquaculture and stock enhancement in the southern United States. This work aimed to develop genomic resources for the genetic management of aquaculture programs and to investigate population structure using high-throughput sequencing technologies. Eighty-four new microsatellite markers were developed through screening of Illumina paired-end sequencing reads. Microsatellite loci and Single Nucleotide Polymorphisms (SNPs) generated through Restriction Site Associated DNA (RAD) sequencing were assayed in 5 outbred full-sib families to construct a high-density linkage map of the red snapper genome. The map consists of 7,964 …

Automated Detection Of Deep-Sea Animals, Dallas J. Hollis, Duane Edgington, Danelle Cline

STAR Program Research Presentations

The Monterey Bay Aquarium Research Institute routinely deploys remotely operated underwater vehicles equipped with high definition cameras for use in scientific studies. Utilizing a video collection of over 22,000 hours and the Video Annotation and Reference System, we have set out to automate the detection and classification of deep-sea animals. This paper serves to explore the pitfalls of automation and suggest possible solutions to automated detection in diverse ecosystems with varying field conditions. Detection was tested using a saliency-based neuromorphic selective attention algorithm. The animals that were not detected were then used to tune saliency parameters. Once objects are detected, …

The Maintenance Of Phenotypic Divergence Through Sexual Selection: An Experimental Study In Barn Swallows Hirundo Rustica, Rebecca Safran, Yoni Vortman, Brittany R. Jenkins, Joanna K. Hubbard, Matt Wilkins, Rachel J. Bradley, Arnon Lotem

School of Biological Sciences: Faculty Publications

Previous studies have shown that sexual signals can rapidly diverge among closely related species. However, we lack experimental studies to demonstrate that differences in trait-associated reproductive performance maintain sexual trait differences between closely related populations, in support for a role of sexual selection in speciation. Populations of Northern Hemisphere distributed barn swallows Hirundo rustica are closely related, yet differ in two plumage-based traits: ventral color and length of the outermost tail feathers (streamers). Here we provide experimental evidence that manipulations of these traits result in different reproductive consequences in two subspecies of barn swallow: (H. r. erythrogaster in North …

The North American Grouse: Their Biology And Behavior, Paul A. Johnsgard

Zea E-Books Collection

The ten currently recognized species of grouse in North America have played an important role in America’s history, from the famous but ill-fated heath hen, a primary source of meat for the earliest New England immigrants, to the ruffed grouse, currently one of the most abundant and soughtafter upland game birds in more than 40 states and provinces. This book summarizes the ecology, reproductive biology, and social behavior of all ten of the extant North American grouse species. It also describes the current status of grouse populations, some of which are perilously close to extinction. The social behavior of grouse …

The Origin And Expansion Of The Eastern Red Fox, Adrienne Egge Kasprowicz

LSU New Orleans Theses and Dissertations

When new populations are first identified in a region there are multiple potential sources: introduction of a non-native species, extra-range expansion of a nearby population, or demographic growth of a previously unnoticed species. Red foxes were absent or rare in the mid-eastern portion United States until the late 1800s. Their origins potentially include natural population increase/expansion, translocations from Europe, and, eventually, 20th century fur farming. In this study I attempt to identify the relative impact of native expansion versus human mediated introductions of both colonial era European foxes and early 20^th century fur-farm foxes on the establishment of red …

Assessment Of American White Pelican Predation And Reproductive Success Of Walleye In The Tamarac River, Mn, Jake Graham

Biology Graduate Theses

The Tamarac River is a major tributary of the Red Lakes MN, which provides an economically important multispecies fishery. The river experiences spring spawning migrations of northern pike, walleye, and white suckers. However, limited data exists related to reproductive success of fishes in the river. Furthermore, in the previous decade large congregations of American white pelicans (AWPE) have been observed using the Tamarac River as a foraging ground each spring. Assessing reproductive success of fishes in the Tamarac River provides a more holistic understanding of fish ecology in the river and the importance of the Tamarac River to the Red …

Occupancy Rates And Detection Probabilities Of Red-Backed Salamanders On The Virginia Fall Line, Jay D. Mcghee

Virginia Journal of Science

To meet the conservation needs of declining amphibian populations, there is a need to assess monitoring techniques in various habitat types and seasons. I assessed detection rates and proportion of area occupied via transect monitoring for red-backed salamanders at a site along the Virginia Fall Line in Doswell, Virginia. I established 24 transects in a 3.2-ha area in both riparian and upland habitats. Objects providing natural cover along these transects were sampled 3 times a week in fall and spring over a two-year period. Models of occupancy and detection were developed and compared using Akaike’s Information Criterion. Based on 113 …

Acoustic Detection Reveals Fine-Scale Distributions Of Myotis Lucifugus, Myotis Septentrionalis, And Perimyotis Subflavus In Eastern Nebraska, Jeremy A. White, Cliff Lemen, Patricia Freeman

School of Natural Resources: Faculty Publications

ABSTRACT.—Before white-nose syndrome arrives in Nebraska, it is important to document the preexposure distributions of cave bats in the state. We examined the distributions of Myotis lucifugus (little brown myotis), Myotis septentrionalis (northern long-eared myotis), and Perimyotis subflavus (tri-colored bat) in eastern Nebraska by setting acoustic detectors for a single night at 105 sites in wooded habitats during summers of 2012 and 2014. We compared 2 methods of determining presence at each site. Results of our analyses are fine-scale distributional maps for these bats and some range extensions from published records. Results for M. septentrionalis and P. subflavus are largely …