Other Ecology and Evolutionary Biology Commons^™

The Status Of Two Species Of Nonindigenous Lizards In Florida, The Slender Chameleon, Chamaeleo Gracilis Hallowell 1842 And White-Lined Chameleon, Furcifer Lateralis (Gray 1831): A Corrigendum., Kenneth L. Krysko, Louis A. Somma

Papers in Herpetology

Krysko et al. (2016) recently published a summary of all known verified introductions of nonindigenous amphib­ians and reptiles in Florida, USA. Herein, we correct the iden­tity tity of one species and include an additional new record of a nonindigenous chameleon in Florida.

Krysko et al. (2016) reported the presence of a White-lined Chameleon, Furcifer lateralis (Gray 1831). In fact, this was a misidentified Slender Chameleon, Chamaeleo gracilis Hallowell 1842 (C. Anderson, pers. comm. 2016). Discussion and reference to F. lateralis in Krysko et al. (2016) and all associated data (UF voucher number, locality, collector, and collection date, including Table 1, …

Presentation, Emily Gonda '20, Sravani Ponnaluri '20

Living Green

No abstract provided.

Presentation, Riley Brutto '20, Maddy Chow '20

Living Green

No abstract provided.

Presentation, Ryan Talusan '20, Caitlyn Castillo '20

Living Green

No abstract provided.

Presentation, Sabrina Meng '20, Janna Jann '20

Living Green

No abstract provided.

Presentation, Samira Cheruku '20, Liza Kuzmina '20

Living Green

No abstract provided.

Slowing The Evolution And Outbreak Of Antibiotic Resistance, Connie Okasaki

HMC Senior Theses

Antibiotic resistance is a problem of significant and growing international concern, in part due to the rapid evolution of new resistances. One potentially important factor in the emergence of resistance is concentrated antibiotic use in environments such as hospitals. Such high use creates a strong selective pressure for pathogens to evolve resistance. We analyze some strategies hospitals can use to slow the evolution of resistance, and estimate the length of the delay between evolution and outbreak of resistance.

Intertemporal Choice And Delayed Gratification, Jeffrey R. Stevens

Jeffrey Stevens Publications

A parasitoid wasp has deposited half of her eggs in a host. She now faces the choice between depositing her remaining eggs in the same host or searching for another. Continuing to deposit in the current host provides the immediate payoff of completing her reproductive duties, allowing her to move on to other activities such as foraging or searching for another mate. Searching for another host, in contrast, delays the payoffs of reproducing until a suitable host is found. This wasp faces an intertemporal choice—that is, a choice between options that involve payoffs available at different times (Read, 2004; Stevens, …

Modeling The Spread Of Sudden Oak Death Across A Heterogeneous Landscape In Redwood National Park Using A Spatially-Explicit Epidemiological Model, Laura A. Morgan

Cal Poly Humboldt theses and projects

The pathogen Phytophthora ramorum, the causal agent of Sudden Oak Death (SOD), is responsible for the deaths of millions of oak (Quercus spp.) and tanoak (Notholithocarpus densiflorus) trees in California and Oregon (USA). A recent infection in Redwood National Park (RNP) in California (USA) provided an opportunity to adapt an existing SOD model to assess the efficacy of current and proposed management strategies. A common method of SOD treatment includes killing both infected and uninfected hosts in the area of infection, as well as the area surrounding the infection to create buffers to account for undetected …

K-Mer Analysis Pipeline For Classification Of Dna Sequences From Metagenomic Samples, Russell Kaehler

Graduate Student Theses, Dissertations, & Professional Papers

Biological sequence datasets are increasing at a prodigious rate. The volume of data in these datasets surpasses what is observed in many other fields of science. New developments wherein metagenomic DNA from complex bacterial communities is recovered and sequenced are producing a new kind of data known as metagenomic data, which is comprised of DNA fragments from many genomes. Developing a utility to analyze such metagenomic data and predict the sample class from which it originated has many possible implications for ecological and medical applications. Within this document is a description of a series of analytical techniques used to process …

Associations Between Invasive Eurasian Watermilfoil And Littoral Fish And Invertebrate Communities In The Keweenaw Waterway Of Lake Superior, Carmen Leguizamon

Dissertations, Master's Theses and Master's Reports

The invasion of Eurasian watermilfoil (Myriophyllum spicatum) can influence littoral zone communities within lakes. Its formation of dense mats at the water surface can suppress native macrophyte growth and impact fish diets and community structure, as well as invertebrate assemblages. However, in the colder waters of the upper Great Lakes region, Eurasian watermilfoil is patchily distributed and integrates more with the native macrophyte community. In order to identify the associations of invasive Eurasian watermilfoil and the littoral communities of the Keweenaw Waterway of Michigan’s Upper Peninsula, we sampled invertebrates, fish, and macrophytes at sites that represented a gradient of Eurasian …

Distribution Changes, Genetic Population Structure, And A Novel Environmental Dna (Edna) Detection Method For Darters (Subgenus Nothonotus) In The Upper Ohio River Watershed, Anthony S. Honick

Electronic Theses and Dissertations

In the upper Ohio River watershed three species of small-bodied benthic fish the Bluebreast Darter, Etheostoma (Nothonotus) camurum (Cope), the Tippecanoe Darter, Etheostoma (Nothonotus) tippecanoe Jordan and Evermann, and the Spotted Darter, Etheostoma (Nothonotus) maculatum Kirtland previously existed in disjunct distributions due to poor water quality and habitat degradation. Signs of recovery indicated that these species were moving from areas of refugia into the deeper mainstem waters of the Allegheny and Ohio rivers and expanding their distributions. To provide information for the proper conservation management of these species this dissertation was divided into three stages: 1) distribution records were updated …

Inbreeding Depression In The Introduced Spider Latrodectus Geometricus, Margaret A. Howard

Honors College Theses

The brown widow spider (Latrodectus geometricus) is thought to be native to South America or Southern Africa, but its distribution has expanded to most continents by human introduction. In the continental USA, L. geometricus was first documented in south Florida in the 1930’s. In the early 2000’s a population expansion occurred, and this species is now found in Florida, Georgia, South Carolina, Alabama, Mississippi, Louisiana, Texas, and southern California. Introduced species may face many obstacles when establishing a new population. One common obstacle might be severe inbreeding following founder events or genetic bottlenecks. The purpose of this study was …

Sandhill And Whooping Cranes, Jeb Barzen, Ken Ballinger

Wildlife Damage Management Technical Series

As sandhill crane populations continue to grow in the United States, so too does crop damage, property damage to homeowners, and the risk of crane collisions with aircraft. Whooping crane populations also continue to grow, but with a global population of about 500 individuals (as of 2017), damage is rare and problems often require different solutions due to the species’ endangered status. The behavioral characteristics and habitat needs of sandhill and whooping cranes set the stage for conflict between these birds and people. Recognizing behavioral differences between territorial and non-territorial cranes greatly improves the effectiveness of any management effort.

Human-Wildlife …

Wildlife At Airports, Travis L. Devault, Bradley F. Blackwell, Jerrold L. Belant, Michael J. Begier

Wildlife Damage Management Technical Series

Collisions between aircraft and wildlife (wildlife strikes) are common occurrences across the developed world. Wildlife strikes are not only numerous, but also costly. Estimates suggest that wildlife strikes cost the civil aviation industry in the U.S. up to $625 million annually, and nearly 500 people have been killed in wildlife strikes worldwide. Most wildlife strikes occur in the airport environment: 72 percent of all strikes occur when the aircraft is ≤500 ft (152 m) above ground level, and 41 percent of strikes occur when the aircraft is on the ground during landing or takeoff. Thus, management efforts to reduce wildlife …

Connecting The Dots: A Food Web Of The Lower Ogeechee River, Allison K. Lutz

College of Graduate Studies: Theses & Dissertations

The Ogeechee is a fifth order river that originates in the Georgia Piedmont region and flows through the Coastal Plain region in the Southeastern portion of the state. The Ogeechee is one of the last unregulated rivers in Georgia; allowing for studies to occur under a natural flow regime. To my knowledge, studies that incorporate fish into ecological networks (e.g., food webs) are yet to be developed for the Ogeechee River, thus, one of the main objectives of this research was to address this knowledge gap. Five fish species were collected from June 2016 to October 2016 in order to …

Bat Occupancy Estimates And Species Richness At Cache River National Wildlife Refuge, Samuel Schratz, Virginie Rolland, Jason Phillips, Richard Crossett, David Richardson, Thomas S. Risch

Journal of the Arkansas Academy of Science

Six bat species of special concern, threatened or endangered, may occur in one of Arkansas’ largest bottomland hardwood forests, the Cache River National Wildlife Refuge (CRNWR). However, inventory of bat species throughout the refuge has been lacking and management plans may not be adequate in promoting bat conservation. The objectives of this study were to inventory bat species in the CRNWR, and determine bat-habitat associations via occupancy estimates. From May–August 2014 and 2015, we mist-netted from sunset for 5 hours. We also deployed bioacoustic devices throughout 5 habitat types (cypress-tupelo [dominantly Taxodium distichum and Nyssa aquatica], emergent wetland, mature …

Enrichment Use & Social Interactions In A Mixed-Species Enclosure Of Sumatran (Pongo Abelij) & Bornean Orangutans (P. Pygmaeus) & Northern White-Cheeked Gibbons (Nomascus Leucogenys), Emily Veitia

All Master's Theses

Enrichment is an aspect of captive husbandry that has been shown to positively impact animals’ well-being and can be designed to encourage species-typical behaviors, such as foraging and arboreality. Enrichment can include housing together multiple compatible species. Orangutans are sympatric with siamangs and agile and Bornean gibbons, so several zoos house these four Asian ape species in the same enclosure, in part, as social enrichment. In my study, I observed enrichment use and social interactions in a mixed-species enclosure at the Oregon Zoo, which housed two Sumatran (Pongo abelii) and two Bornean (P. pygmaeus) orangutans with …

Luminescent Syllid (Odontosyllis Sp.) Courtship Display Densities Vary Across Marine Habitats Around South Water Caye, Belize, Mitchel Mccloskey, Joshua Scheil, Gregory J. Sandland, Gretchen A. Gerrish

Gulf and Caribbean Research

Bright—green luminescent clouds frequently occur at the surface of shallow waters of the Caribbean Sea. These clouds are produced by syllid polychaetes during courtship. Although temporal variation in the occurrence of these courtship displays has been documented throughout the diurnal and lunar cycle, other factors such as habitat type have not been well studied. In this study, we investigated how syllid courtship—display densities varied across 3 substrate types (grassbed, rubble and coral) over a 3 day period. In line with previous studies, we found that syllid courtship displays occurred over seagrass and rubble substrates; however, we also found that display …

High-Resolution Mapping Of Hierarchical Greater Sage-Grouse Nesting Habitat: A Grain-Spectrum Approach In Northwestern Wyoming, Robert T. Haynam Iii

Graduate Student Theses, Dissertations, & Professional Papers

Our overall objective was to create a probabilistic nesting-habitat map for the Jackson Hole sage-grouse population that would have utility as a tool for future research, conservation, and management. The models that we developed for this purpose were specified to evaluate whether sage-grouse may be selecting nesting-habitat characteristics simultaneously at various spatial scales. Our spatially-explicit landscape-scale research was implemented primarily with readily available National Agriculture Imagery Program (NAIP) data. All nesting data was collected from 2007-2010. We tested how a broad range of grain sizes (spatial resolution) of covariate values affected the fit to logistic regression models used to estimate …

Competition And Community Interactions Of Two Generalist Herbivores, Elizabeth Ellen Barnes

Electronic Theses and Dissertations

Competition can have far-reaching consequences for the fitness and distribution of many organisms. In herbivorous insects, competition mediated by a third organism is more common than direct competition and has a strong effect on insect communities; yet most research on indirect competition among herbivores focuses on dietary specialists, and those studies that do include generalists tend to rear them on agricultural crops. My project examines species interactions at three levels: intraspecific competition (within species), interspecific competition (between species), and ecosystem engineering effects at the community level. I studied competition and community interactions of two temporally-separated species of herbivorous insects, western …

The Effect Of Artificial Light Pollution On Orientation Of Hatchling Loggerhead Sea Turtles (Caretta Caretta) In The Grand Strand Region, South Carolina, Emily S. Asp

Electronic Theses and Dissertations

Sea turtle hatchlings primarily utilize sight to detect differences in elevation and light intensity present along the horizon to navigate from the nest to the water’s edge. The addition of artificial lights can cause visual misdirection, resulting in disorientation (aimlessly wandering in circular paths) or misorientation (moving in distinct paths away from ocean). Extensive research has been done on effects of high levels of artificial light but little on effects of comparatively lower levels of artificial light on hatchling sea turtle orientation. This study examined these lower intensity areas to identify if there is a threshold of artificial light above …

The Role Of Habitat Management In Shaping Predation, Animal Color, And Gene Flow In A Metapopulation Of Florida Scrub Lizards (Sceloporus Woodi), Richard William Orton

College of Graduate Studies: Theses & Dissertations

Anthropogenic disturbance is known to affect biological diversity at the community, species, and genetic levels. Habitat fragmentation, in particular, has been shown to impact predator abundance and distribution, impede dispersal, and augment genetic drift. In small populations, which often result from habitat fragmentation, the effects of human disturbance may be disproportionately expressed. Small populations are more susceptible to selection pressures and random drift because genetic and phenotypic frequencies can become rapidly fixed, in comparison to larger populations. In turn, fixation of maladaptive alleles or morphs can accelerate extinction. For example, cryptic color polymorphism can be maintained by apostatic selection, where …

Limited Evidence For Co2-Related Growth Enhancement In Northern Rocky Mountain Pinus Contorta Populations: Trends In Growth And Intrinsic Water-Use Efficiency Across Climate Gradients, Charlotte C. Reed

Graduate Student Theses, Dissertations, & Professional Papers

Forests sequester large amounts of carbon annually; however, the degree to which enhanced forest productivity is due to more conducive climate or CO₂ fertilization remains uncertain. Increasing atmospheric CO₂ may enhance photosynthesis and/or decrease stomatal conductance thereby enhancing intrinsic water use efficiency (iWUE). While increasing iWUE has been observed in most trees globally, this increase does not necessarily translate into greater growth. This study aims to evaluate whether responses of radial growth and iWUE to increasing CO₂ vary across climatic gradients. To investigate interactions between climate and CO₂ and their impacts on tree physiology and growth, …

Can Functional Traits Predict Plant Community Response To Global Change?, Sarah Kimball, Jennifer L. Funk, Marko J. Spasojevic, Katharine N. Suding, Scot Parker, Michael K. Goulden

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

One primary goal at the intersection of community ecology and global change biology is to identify functional traits that are useful for predicting plant community response to global change. We used observations of community composition from a long-term field experiment in two adjacent plant communities (grassland and coastal sage shrub) to investigate how nine key plant functional traits were related to altered water and nitrogen availability following fire. We asked whether the functional responses of species found in more than one community type were context dependent and whether community-weighted mean and functional diversity were significantly altered by water and nitrogen …

Integrating Habitat Suitability Modeling And Radio Telemetry To Describe Habitat Use Of The Western Massasaugas, Sistrurus T. Tergeminus, In Texas, Mitchell R. Barazowski

Biology Theses

Habitat suitability modeling using the software package MaxEnt (Phillips, Anderson, & Schapire, 2006) is a popular method for describing the habitat of rare species. MaxEnt uses “presence only” data to develop models; however presence data are highly skewed towards areas of high detection probability and these areas may not represent the full range of habitat use. Thusly, predictions from models developed using only data from areas with high detection probability may not represent all suitable habitat. This study tested the ability of MaxEnt models developed using three different data sets to accurately describe Western Massasauga (Sistrurus t. tergeminus) habitat at …

Lilliput Effect Dynamics Across The Cretaceous-Paleogene Mass Extinction: Approaches, Prevalence, And Mechanisms, Matthew Brett Jarrett

USF Tampa Graduate Theses and Dissertations

An organism's body size entails both physiological and ecological costs. Furthermore, as a parameter in analyzing organisms, it represents a fundamental and essential morphometric character. Reductions in size following mass extinction is a commonly observed phenomenon in the fossil record. This study examines the evolutionary significance of this phenomenon termed the: 'Lilliput Effect' by proposing that it represents a rapid evolutionary response to altered selection pressures during a mass extinction. This primary hypothesis is evaluated against two additional hypotheses of size reduction: 1) stunted growth as a response to stressed ecosystems, and/or 2) mass extinctions are size selective.

These hypotheses …

Punctuated Evolution Within A Eurythermic Genus (Mesenchytraeus) Of Segmented Worms: Genetic Modification Of The Glacier Ice Worm F1f0 Atp Synthase, Shirley A. Lang

Graduate School of Biomedical Sciences Theses and Dissertations

Segmented worms (Annelida) are among the most successful animal inhabitants of extreme environments worldwide. An unusual group of Mesenchytraeus worms endemic to the Pacific Northwest of North America occupy geographically proximal ecozones ranging from low elevation temperate rainforests to high altitude glaciers. Along this altitudinal transect, Mesenchytraeus representatives from disparate habitat types were collected and subjected to deep mitochondrial and nuclear phylogenetic analyses. Evidence presented here employing modern bioinformatic analyses (i.e., maximum likelihood, Bayesian inference, multi-species coalescent) supports a Mesenchytraeus “explosion” in the upper Miocene (5-10 million years ago) that gave rise to ice, snow and terrestrial worms, derived from …

How Do Designers Of The Built Environment Attempt To Make Ecological Sustainability Sensory Legible?, Carly L. Bartow

Architecture Undergraduate Honors Theses

This paper attempts to provide a theoretical framework for making ecosystem function and ecologically sustainable design more perceptible or sensible to people through architecture and the built environment. Design features of the Bertschi School Science Wing and the Bullitt Center in Seattle, Washington are incorporated to illustrate the sensory legibility of ecological sustainability criteria.The criteria are available to designers to help educate a building's occupants on environmentally sustainable design and motivate more sustainable behavior.

An Analysis Of Morphometric Differentiation In Lake And River Populations Of The Emerald Shiner, Notropis Atherinoides, John J.V. Lang

Biology Theses

Understanding mechanisms that account for phenotypic variation has been of interest to biologists since the advent of Darwin’s theory of evolution by natural selection. It is now understood that adaptive divergence is a key driving force of intraspecific differentiation. Further, differences in habitat (e.g., flow regime, prey regime) have been shown to drive adaptive divergence in fish. For instance, fish inhabiting faster flowing water generally exhibit more fusiform bodies than their lake counterparts. Similarly, the partitioning of benthic and pelagic morphs generally results in smaller heads with the latter. This study used geometric shape analysis to assess morphological differences between …