Other Ecology and Evolutionary Biology Commons^™

Urbanization And Population Growth: Projected Impacts Of Growth On Ecological Resources In Ontario1, Laura J. Bozzelli

International ResearchScape Journal

No abstract provided.

Predation Effects On Mid-Marsh Ribbed Mussel Mortality, Cluster Size, And Facilitation Of Cordgrass Growth, Colten Winter, Keith Walters

Honors Theses

Reciprocal facilitation between Geukensia demissa, ribbed mussels, and Sporobolus alterniflorus, cordgrass, has a positive effect on salt marsh ecosystems. Mussel clusters enhance cordgrass growth and drought resistance and cordgrass provides attachment and shade for mussel aggregations. Along with benefits for both mussels and cordgrass, the mutualism facilitates increased biodiversity and shoreline stabilization and enhances marsh ecosystem functions. Aspects of mussel patch configuration including cluster size, perimeter and connectivity modulate the reciprocal facilitation effects of cordgrass and mussels on marsh ecosystems. In a northern South Carolina marsh system, mussel patch configuration positively influenced cordgrass biomass. Predation affected mussel patch …

The Effects Of Eating Unprocessed Foods, Gwen Peters, Meghan Sheridan, Caitlin Clack

Student Work

Some studies have shown that processed foods are “getting safer and the technologies used to produce them are only getting better.” Although this is a good claim, unprocessed foods still provide better social, environmental and economical resources to communities.

Vines In The Neotropics: Phylogenomics, Biogeography And Systematics In Passion Flowers (Passiflora Subgenus Decaloba Section Decaloba), Serena Acha

Dissertations

With 600 species, Passiflora is a large, morphologically complex and broadly distributed genus in Passifloraceae that represents a major challenge to scientists interested in understanding the evolutionary history of tropical vines. Passiflora has been divided into subgenera, super sections and sections. One of the most enigmatic and species-rich (~120 spp.) groups in Passiflora is section Decaloba, which occurs in the Neotropics and is particularly diverse in Andean montane forests. In this study, we used phylogenomic and population genomic approaches to investigate the evolutionary history, biologeography, species boundaries, and taxonomy of Passiflora section Decaloba. We sampled herbarium specimens, extracted …

Dynamics Of Avian Elevational Ranges Reveal Hidden Evolutionary Forces, Chauncey R. Gadek

Biology ETDs

The distribution of life across the Andes mountains reflects historical elevational-range contraction and expansion. Whereas contraction implies specialization, expansion requires overcoming hidden barriers. Three eco-evolutionary phenomena may drive patterns in rates of elevational range evolution: (1) The Dobzhansky-MacArthur Phenomenon (DMP) predicts lower rates of upward expansion with harsher physical conditions, while downward expansion increases with lower diversity; (2) the evolutionary tendency toward specialization predicts contraction increases when ranges are broad; and (3) natural selection for respiratory performance could suppress expansion across mid-elevations due to gene-environment mismatch. We modeled elevational range shifts of Neotropical landbirds. Contrary to the DMP, upward expansion …

Mycobiome Analysis Of Trees Selected By Black-Capped Chickadees (Poecile Atricapillus) As Nest Sites, Connor Gable

All NMU Master's Theses

Decay fungi may aid primary cavity excavators, such as woodpeckers, in nest excavation by softening wood, and in turn the excavators disperse fungi. Recent molecular techniques have allowed researchers to examine communities of fungi present in environmental samples more comprehensively than ever before. However, this association has not been examined for primary excavating songbirds (Passeriformes). In this study, I examine the communities of fungi in trees selected by black-capped chickadees (Poecile atricapillus) and compare them to communities in non-selected control trees to determine whether chickadee nest trees are associated with specific fungal taxa and communities. Overall, I identified …

Rasp 4: Ancestral State Reconstruction Tool For Multiple Genes And Characters, Yan Yu, Christopher Blair, Xingjin He

Publications and Research

With the continual progress of sequencing techniques, genome-scale data are increasingly used in phylogenetic studies. With more data from throughout the genome, the relationship between genes and different kinds of characters is receiving more attention. Here, we present version 4 of RASP, a software to reconstruct ancestral states through phylogenetic trees. RASP can apply generalized statistical ancestral reconstruction methods to phylogenies, explore the phylogenetic signal of characters to particular trees, calculate distances between trees, and cluster trees into groups. RASP 4 has an improved graphic user interface and is freely available from http://mnh.scu.edu.cn/soft/blog/RASP (program) and https://github.com/sculab/RASP (source code).

Predictors Of Bat Species Richness Within The Islands Of The Caribbean Basin, Justin D. Hoffman, Gabrielle Kadlubar, Scott C. Pedersen, Roxanne J. Larsen, Peter A. Larsen, Carleton J. Phillips, Gary G. Kwiecinski, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

Several mechanisms have been shown to influence species richness among island ecosystems, yet most studies limit their focus to a few predictor variables. The objective of this study is to investigate variation in Chiropteran richness across islands in the Caribbean Basin with an extensive set of predictor variables. Using recent faunal surveys, the most contemporary list of bat species per island was complied. Data were collected on 17 predictor variables, which summarized five general island characteristics including island area, isolation, habitat diversity, human impact, and climate. An information-theoretic approach was used by fitting alternative candidate models to determine which variable(s) …

A Scientometric Appreciation Of Robert J. Baker's Contributions To Science And Mammalogy, David J. Schmidly, Robert D. Bradley, Emma K. Roberts, Lisa C. Bradley, Hugh H. Genoways

University of Nebraska State Museum: Mammalogy Papers

This article describes Robert James Baker’s academic pedigree and genealogy, his scientific productivity (number of publications), his citations, his students, his contributions to his university and scientific societies, his personality in relation to his scientific achievements, his legacy, and a personal note of appreciation by individuals who worked with him and knew him well. His accomplishments are compared with other dominant personalities in the field of mammalogy, both historical and contemporary. The paper builds on the 2018 obituary authored by Hugh Genoways and others that was published in the Journal of Mammalogy, but includes a much more quantitative and …

Quantifying Pollen Traits To Build A Mathematical Model Of Pollen Competition - A Mathematician's Perspective, Montana Ferita, Julie Fucarino, Alex Capaldi, Charlotte Beckford

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Quantifying Pollen Traits To Build A Mathematical Model Of Pollen Competition - A Biologist's Perspective, Rob Swanson, Alex Capaldi

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Rose-Ringed Parakeets, Page E. Klug, William P. Bukoski, Aaron B. Shiels, Bryan M. Kluever, Shane R. Siers

Wildlife Damage Management Technical Series

Rose-ringed parakeets (Psittacula krameri; hereafter RRPA; Figure 1) are an invasive species in the United States, present in Alabama, Louisiana, Texas, and Virginia, and with established populations in California, Florida, and Hawaii. They are also the most successful species of invasive parakeet, worldwide. RRPA can cause significant damage to agriculture, including grains, oilseeds, fruits, and ornamental plants. Large flocks of RRPA roost near human infrastructure resulting in concerns about human health and safety (e.g., collisions with aircraft, disease transmission, feces accumulation, and noise complaints). The population growth and spread of RRPA is of conservation concern given the potential impact on …

Plasticity Of Foot Muscle And Cardiac Thermal Limits In The Limpet Lottia Limatula From Locations With Differing Temperatures, Terrance Wang, Richelle L. Tanner, Eric J. Armstrong, David R. Lindberg, Jonathon H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Species distributions are shifting in response to increased habitat temperatures as a result of ongoing climate change. Understanding variation in physiological plasticity among species and populations is important for predicting these distribution shifts. Interspecific variation in intertidal ectotherms’ short-term thermal plasticity has been well established. However, intraspecific variation among populations from differing thermal habitats remains a question pertinent to understanding the effects of climate change on species’ ranges. In this study, we explored upper thermal tolerance limits and plasticity of those limits using a foot muscle metric and 2 cardiac metrics (Arrhenius breakpoint temperature, ABT, and flatline temperature, FLT) in …

Diversity And Abundance Of Soil Microbes Differ Along A Forest-Pasture Transect, Hannah Suli, Ashley Schumann, Cleo Bickley, Jasmine Rodriguez

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Information Resources For Animal Control And Wildlife Damage Management, Stephen M. Vantassel, Michael W. Fall, Serge Lariviére

Wildlife Damage Management Technical Series

A bumper sticker reads, “If you think education is expensive, you oughta try ignorance.” That statement could not be truer in regard to wildlife damage management. Being willing to learn is a critical attitude for everyone involved in wildlife damage management. Since wildlife damage management intersects so many other disciplines, no single person can be an expert in all of them. In addition, the arrival of an invasive species, changes in building practices (e.g., egress windows, ridge vents), or the implementation of new regulations can confound traditional practices and require new control methods. Thus, it is important to provide a …

The Evolution Of Spinosad Resistance In Colorado Potato Beetles (Leptinotarsa Decemlineata), Coby Michael Klein

Dissertations, Theses, and Capstone Projects

Colorado potato beetles (Leptinotarsa decemlineata) are a major pest of cultivated potato plants worldwide. They are well-known for their ability to rapidly evolve resistance to all major classes of pesticides. Defoliation of potato plants by L. decemlineata can reduce potato yields by a considerable margin. The damage done by resistant beetles is steep and much research is focused on developing new chemical controls, especially those derived from naturally occurring compounds. Spinosad is a relatively new natural product insecticide, introduced approximately a decade ago, suitable for use in organic farming. Potato beetles on Long Island, NY developed very strong …

Isolation Of Caldatribacterium (Op9) And Investigation Of Its Potential Interactions With A Novel, Co-Cultivated Thermodesulfobacterium Species, Toshio Alvarado

Electronic Theses, Projects, and Dissertations

Atribacteria (OP9), candidate phylum with no representatives in pure culture, is found in various anaerobic environments worldwide. “Caldatribacterium”, a lineage within Atribacteria that is predicted to be a strictly anaerobic sugar fermenter based on cultivation-independent genomic analyses, is currently being maintained in lab enrichment cultures with fucose as its sole growth substrate. Metagenomics and 16S rRNA gene tag sequencing indicated that the fucose culture was a co-culture of “Caldatribacterium” and an uncultivated member of the genus Thermodesulfobacterium. Due to failed attempts to isolate “Caldatribacterium” by dilution-to-extinction and plating, it was hypothesized that “Caldatribacterium” is dependent in some way on the …

Using Single-Cell Sorting, Fish And 13c-Labeling To Cultivate And Assess Carbon Substrate Utilization Of ‘Aigarchaeota’ And Other Novel Thermophiles, Damon Kurtis Mosier

Electronic Theses, Projects, and Dissertations

‘Aigarchaeota’, a deeply branching lineage in the domain Archaea with no cultivated representatives, includes both thermophilic and hyperthermophilic microorganisms that reside in terrestrial and marine geothermal environments. The ‘Aigarchaeota’ consists of at least nine proposed genus-level groups that have been confirmed via 16S rRNA sequencing, with ‘Aigarchaeota’ Group 1 (AigG1) being the focus of this study. Based on cultivation-independent genomic data available from several AigG1 members in Great Boiling Spring (GBS), NV, and Yellowstone National Park, 22 different types of growth media were designed and tested for their ability to support growth of AigG1. One of these cultures, G1-10, was …

Phylogenetic Trees And Networks Can Serve As Powerful And Complementary Approaches For Analysis Of Genomic Data, Christopher Blair, Cécile Ané

Publications and Research

Genomic data have had a profound impact on nearly every biological discipline. In systematics and phylogenetics, the thousands of loci that are now being sequenced can be analyzed under the multispecies coalescent model (MSC) to explicitly account for gene tree discordance due to incomplete lineage sorting (ILS). However, the MSC assumes no gene flow post divergence, calling for additional methods that can accommodate this limitation. Explicit phylogenetic network methods have emerged, which can simultaneously account for ILS and gene flow by representing evolutionary history as a directed acyclic graph. In this point-of-view we highlight some of the strengths and limitations …

Diffuse Light And Wetting Differentially Affect Tropical Tree Leaf Photosynthesis, Z. Carter Berry, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

‐Most ecosystems experience frequent cloud cover resulting in light that is predominantly diffuse rather than direct. Moreover, these cloudy conditions are often accompanied by rain that results in wet leaf surfaces. Despite this, our understanding of photosynthesis is built upon measurements made on dry leaves experiencing direct light.

‐Using a modified gas exchange setup, we measured the effects of diffuse light and leaf wetting on photosynthesis in canopy species from a tropical montane cloud forest.

‐We demonstrate significant variation in species‐level response to light quality independent of light intensity. Some species demonstrated 100% higher rates of photosynthesis in diffuse light …

Uncovering The True Diversity Of Chanterelles In Indiana, Jairus Chittenden

The Journal of Purdue Undergraduate Research

No abstract provided.

Does A Carbonatite Deposit Influence Its Surrounding Ecosystem?, James M.C. Jones, Elizabeth A. Webb, Michael D.J. Lynch, Trevor C. Charles, Pedro M. Antunes, Frédérique C. Guinel

Biology Faculty Publications

Carbonatites are unusual alkaline rocks with diverse compositions. Although previous work has characterized the effects these rocks have on soils and plants, little is known about their impacts on local ecosystems. Using a deposit within the Great Lakes–St. Lawrence forest in northern Ontario, Canada, we investigated the effect of a carbonatite on soil chemistry and on the structure of plant and soil microbial communities. This was done using a vegetation survey conducted above and around the deposit, with corresponding soil samples collected for determining soil nutrient composition and for assessing microbial community structure using 16S/ITS Illumina Mi-Seq sequencing. In some …

Integrated Pest Management In The Academic Small Greenhouse Setting: A Case Study Using Solanum Spp. (Solanaceae)., Daniel S. Hayes, Ingrid E. Jordon-Thaden, Jason T. Cantley, Angela J. Mcdonnell, Christopher T. Martine

Faculty Journal Articles

Premise

Botanical faculty and staff at academic institutions are often tasked with establishing and/or caring for plant collections held in small greenhouse facilities. Once plants are in place, an especially acute challenge is managing plant pest/pathogen populations. Integrated pest management (IPM) approaches are an excellent option, but few examples exist in the literature of successful programs that have been developed in academic small greenhouse settings.

Methods and Results

Over several years, we developed an IPM program for two small research greenhouses on the campus of a primarily undergraduate institution where hundreds of plants have been grown for studies in the …

The Value Of Inspection Stations For Detecting Nonindigenous Species Lacking Agricultural Significance: The Mexican Treefrog, Smilisca Baudinii Complex (Duméril And Bibron 1841) (Hylidae), Interdicted In Florida, Usa, From A Shipment Of Peppers, Louis A. Somma

Papers in Herpetology

A Mexican Treefrog, Smilisca baudinii, a nonindigenous species, was interdicted for the first time from an imported shipment of peppers. The value of agriculture inspection stations used to make these interdictions is discussed. This is a single cargo interception (Stage 1: Colautti and MacIsaac 2004) and the first record for S. baudinii intercepted in Florida. Currently no evidence suggests that S. baudinii has been successfully introduced into and established in Florida, although this species could survive climatic conditions in the southern part of the state and at the scheduled destination of this shipment.

Cargo transport of alien species is a …

Methodological Advances For Understanding Social Connectivity And Environmental Implications In Multi-Use Landscapes, Matthew Clark

Boise State University Theses and Dissertations

Integrated social-ecological systems research is challenging; complicated feedback and interactions across scales in multi-use landscapes are difficult to decouple. Novel methods and innovative data sources are needed to advance social-ecological systems research. In this thesis, we use network science as a means of explicitly assessing feedback between social and ecological systems, and internet search data to better predict visitation in protected areas. This thesis seeks to provide empirical examples of emerging social-ecological systems science methods as a precedent for resource managers on-the-ground, as well as extending the line of scientific inquiry on the subject

In the first chapter of this …

Reduced Alphabet Of Prebiotic Amino Acids Optimally Encodes The Conformational Space Of Diverse Extant Protein Folds, Armando D. Solis

Publications and Research

Background

There is wide agreement that only a subset of the twenty standard amino acids existed prebiotically in sufficient concentrations to form functional polypeptides. We ask how this subset, postulated as {A,D,E,G,I,L,P,S,T,V}, could have formed structures stable enough to found metabolic pathways. Inspired by alphabet reduction experiments, we undertook a computational analysis to measure the structural coding behavior of sequences simplified by reduced alphabets. We sought to discern characteristics of the prebiotic set that would endow it with unique properties relevant to structure, stability, and folding.

Results

Drawing on a large dataset of single-domain proteins, we employed an information-theoretic measure …

The ‘Law Of Environmental Dependence’ - Biology And Ethics In The Work Of Ernest Everett Just: + Found – Some 251 Mostly Typed Pages, Theodore Walker

Perkins Faculty Research and Special Events

Abstract-

“The Origin of Man’s Ethical Behavior” (circa October 1941) by Ernest Everett Just and Hedwig A. Schnetzler Just - is an unpublished book manuscript about the biological origins and evolution of ethical behavior, and about “the law of environmental dependence.” Missing since Just’s death in October 1941, it was found and identified in May 2018 among the collected papers of Ernest Everett Just preserved at the Howard University Moorland-Spingarn Research Center in Washington, DC. In addition to the 1996 US postage with the caption “Ernest E. Just, Biologist,” we now have reason to add two new postage stamps with …

Stable Isotope Geochemistry Of Shelled Marine Invertebrates: Wide-Ranging Applications, Nasser M. Al-Qattan

USF Tampa Graduate Theses and Dissertations

Mollusks grow by adding discrete growth layers throughout their lifetime (i.e., accretion). More specifically, most marine mollusks precipitate their shells in oxygen isotopic equilibrium with seawater or with a constant offset from equilibrium. The stable oxygen isotope values (δ¹⁸O) of their shells are determined by the temperature and δ¹⁸O values of the surrounding water during calcification without significant vital effects. In comparison, the stable carbon isotope values (δ¹³C) of their shells reflect those of the dissolved inorganic carbon (δ¹³C- DIC) and respired carbon dioxide. Therefore, variations in the oxygen and carbon isotope …

The Interaction Of Phylogeny And Community Structure: Linking The Community Composition And Trait Evolution Of Clades, William D. Pearse, Pierre Legendre, Pedro R. Peres-Neto, T. Jonathan Davies

Ecology Center Publications

Aim

Community phylogenetic studies use information about the evolutionary relationships of species to understand the ecological processes of community assembly. A central premise of the field is that the evolution of species maps onto ecological patterns, and phylogeny reveals something more than species traits alone about the ecological mechanisms structuring communities, such as environmental filtering, competition, and facilitation. We argue, therefore, that there is a need for better understanding and modelling of the interaction of phylogeny with species traits and community composition.

Innovation

We outline a new approach that identifies clades that are ecophylogenetically clustered or overdispersed and assesses whether …

Species-Area Model Predicting Diversity Loss In An Artificially Flooded Cave In Brazil, Rodrigo L. Ferreira, Thais G. Pellegrini

International Journal of Speleology

Subterranean environments are poorly known regarding many ecological aspects, such as community structure and its response to different disturbances. To estimate the effects of ground area lost in a limestone cave community in Southeastern Brazil, the invertebrate fauna was sampled before 76% of the cave floor was submerged by the filling of a hydroeletric power plant reservoir. Then, a 2-year monitoring was conducted. A species-area curve based on empiric data was constructed and the z-value of the species-area equation was calculated, what allowed estimating the expected cave richness after flooding comparing with data obtained during the monitoring. The results support …