Evolution Commons^™

Evolution: A Divine Interaction Between God And Creation, Hanna V. Larracas

Selected Honors Theses

The purpose of this paper is to provide a framework through relational theology for understanding the randomness evident in genetic variation which is an element within evolution. I propose that evolution can be incorporated into a theology of creation by placing evolution in context of the interaction of love between God and creation when interpreted through a framework of relational theology. Relational theology, as engaging God as primarily self-giving and holistically hospitable (towards God’s self in the Trinity and towards creation), provides space for a theological understanding of randomness genetic variation and mutation within the evolutionary process. Chapter 1 discusses …

A Model Of The Use Of Evolutionary Trees (Muet) To Inform K-14 Biology Education, Yi Kong, Ankita Thawani, Trevor R. Anderson, Nancy Pelaez

PIBERG Publications

Evolutionary trees are powerful tools used in modern biological research, and also commonly used in textbooks and classroom instruction. Studies have shown that K-14 students have difficulties interpreting evolutionary trees. To improve student learning about this topic, it is essential to teach them how to understand and use trees like professional biologists. Unfortunately, few currently used teaching frameworks for evolution instruction are designed for this purpose. In this study we developed the Model of the Use of Evolutionary Trees (MUET), a conceptual model that characterizes how evolutionary trees were used by professional biologists as represented in their research publications. The …

Cognitive Continuity In Cognitive Dissonance, David R. Brodbeck, Madeleine I. R. Brodbeck

Animal Sentience

Zentall’s (2016) model of cognitive dissonance is compatible with cognitive continuity between humans and nonhumans. It may help explain cognitive dissonance-like behavior in many species, including humans. It is also consistent with Tinbergen’s (1963) ‘four whys’ in ethological explanation.

Primate Proteomic Composition Of Seminal Plasma And Prostate-Specific Transglutaminase Activity In Relation To Sexual Selection., Amanda M.C. Zielen

Electronic Theses and Dissertations

Humans (Homo sapiens), chimpanzees (Pan troglodytes), and gorillas (Gorilla gorilla) have diverse mating systems with varying levels of sperm competition. Several seminal plasma genes have been claimed to evolve under positive selection, while others are altered or lost. This study aims to identify biologically relevant differences among seminal plasma proteomes of primates in relation to mating systems and previous genomic studies. Seminal plasma from three individuals of each species were run in triplicate in shotgun liquid chromatography – tandem mass spectrometry (LC-MS/MS) and confirmed with Western blots. Over 7,000 peptides were identified across all …

Darwinian Evolutionary Theory And Constructions Of Race In Nazi Germany: A Literary And Cultural Analysis Of Darwin’S Works And Nazi Rhetoric, Emily M. Wollmuth

Departmental Honors Projects

First published in 1856, Charles Darwin’s Origin of Species is one of the most impactful scientific writings in history. While the influence of Darwinian evolutionary theory on historical events has been widely studied, no single work of scholarship has previously combined close reading of Origin’s representations of “race” with analysis of how those constructions of “racial” difference are (mis)translated across the cultural discourses of the eugenics movement and Nazi Germany. Through comparative cultural studies and close literary analysis of Hitler’s Mein Kampf and Darwin’s works—including Origin, Descent of Man, and Voyage of the Beagle, this paper examines how evolutionary …

Evolutionary Linkage Of Mimetic And Non-Mimetic Color Traits In A Coral Snake Mimicry Complex, John D. Curlis Jr

College of Graduate Studies: Theses & Dissertations

Color polymorphism in aposematic mimicry systems is a perplexing phenomenon for evolutionary biologists, as theoretically the benefits of converging on a model phenotype should constrain the evolution of phenotypic diversity in these systems (i.e., color polymorphism should not occur). Nevertheless, color polymorphism in mimicry systems is prevalent throughout many taxa. In some of these systems, the evolution of color polymorphism results in the existence of non-mimetic morphs, such as those that are cryptic. The case of ground snakes (Sonora semiannulata) is unique in that color polymorphism encompasses both mimetic and cryptic morphs, as well as individual mimetic and …

The Development And Expression Of Canine Emotion, Allison L. Martin

Animal Sentience

In her review of canine emotions, Kujala (2017) discusses how humans often attribute emotions such as fear, love, and jealousy to their canine companions. This attribution is often dismissed as anthropomorphism, suggesting that only humans can possess these emotions. I argue that emotions are not something we possess but features of certain behavioral patterns. Both human and canine emotions arise through evolution and conditioning; examining their development and expression may lead to new insights about both canine and human behavior.

The Emotional Brain Of Fish, Sonia Rey Planellas

Animal Sentience

Woodruff (2017) analyzes structural homologies and functional equivalences between the brains of mammals and fish to understand where sentience and social cognition might reside in teleosts. He compares neuroanatomical, neurophysiological and behavioural correlates. I discuss current advances in the study of fish cognitive abilities and emotions, and advocate an evolutionary approach to the underlying basis of sentience in teleosts.

Consciousness Is Not Inherent In But Emergent From Life, Jon Mallatt, Todd E. Feinberg

Animal Sentience

Reber’s theory of the cellular basis of consciousness (CBC) is right to emphasize that we should study consciousness (sentience) in its simplest form, taking its evolution into account. However, not enough evidence is presented to support CBC’s unorthodox claim that even simple, one-celled organisms are conscious. As pointed out by other commentators, the CBC seems to be based on outdated ideas about evolution and does not acknowledge that consciousness could be an evolutionary novel feature. Such emergent features are abundant in living organisms. We review our own emergentist solution, in which consciousness evolved in the elaborating nervous systems of the …

Evolution In The Deep Sea: Scales And Mechanisms Of Population Divergence, Amanda E. Glazier

Graduate Doctoral Dissertations

The deep sea is the Earth’s largest ecosystem and harbors a unique and largely endemic fauna. Although most research has focused on the ecological mechanisms that allow coexistence, recent studies have begun to investigate how this remarkable fauna evolved.. My work quantifies geographic patterns of genetic variation and investigates potential mechanisms that shape evolution in the deep ocean.

Bathymetric genetic divergence is common in the deep sea with population structure typically decreasing with depth. The evolutionary mechanisms that underlie these patterns are poorly understood. Geographic patterns of genetic variation indicated that the protobranch bivalve Neilonella salicensis was composed of two …

Fishes As A Template For Reticulate Evolution: A Case Study Involving Catostomus In The Colorado River Basin Of Western North America, Max Russell Bangs

Graduate Theses and Dissertations

Hybridization is neither simplistic nor phylogenetically constrained, and post hoc introgression can have profound evolutionary effects. Most studies have focused on tractable model systems, rather than organisms with complicated phylogenetic histories. Finescale Sucker (genus Catostomus) in western North America is recognized as a paradigm of fish hybridization. Yet, its extent of historic and contemporary introgression is largely unstudied, an aspect that impedes the resolution of its phylogeny as a baseline for conservation. To explore reticulation in this group, I assayed variation of 20 Catostomus species across temporal and geographic scales by analyzing hundreds of samples and employing a combination of …

How Could Consciousness Emerge From Adaptive Functioning?, Max Velmans

Animal Sentience

The sudden appearance of consciousness that Reber posits in creatures with flexible cell walls and motility rather than non-flexible cells walls and no motility involves an evolutionary discontinuity. This kind of “miracle” is required by all “discontinuity” theories of consciousness. To avoid miraculous emergence, one may need to consider continuity theories, which accept that different forms of consciousness and material functioning co-evolve but assume the existence of consciousness to be primal in the way that matter and energy are assumed to be primal in physics.

“Cellular Basis Of Consciousness”: Not Just Radical But Wrong, Brian Key

Animal Sentience

Reber (2016) attempts to resuscitate an obscure and outdated hypothesis referred to as the “cellular basis of consciousness” that was originally formulated by the author nearly twenty years ago. This hypothesis proposes that any organism with flexible cell walls, a sensitivity to its surrounds, and the capacity for locomotion will possess the biological foundations of mind and consciousness. Reber seeks to reduce consciousness to a fundamental property inherent to individual cells rather than to centralised nervous systems. This commentary shows how this hypothesis is based on supposition, false premises and a misunderstanding of evolutionary theory. The cellular basis of consciousness …

Beginnings: Physics, Sentience And Luca, Carolyn A. Ristau

Animal Sentience

According to Reber’s model, Cellular Basis of Consciousness (CBC), sentience had its origins in a unicellular organism and is an inherent property of living, mobile organic forms. He argues by analogy to basic physical forces which he considers to be inherent properties of matter; I suggest that they are instead the stuff of scientific investigation in physics. I find no convincing argument that sentience had to begin in endogenously mobile cells, a criterial attribute of the originator cell(s)for sentience according to CBC. Non-endogenously mobile cells, (i.e., plants or precursors) in a moving environment would suffice. Despite my concerns and the …

Phylogenetic Relationships And Evolution Of Snakes, Alex Figueroa

LSU New Orleans Theses and Dissertations

Snakes represent an impressive evolutionary radiation of over 3,500 widely-distributed species, categorized into 515 genera, encompassing a diverse range of morphologies and ecologies. This diversity is likely attributable to their distinctive morphology, which has allowed them to populate a wide range of habitat types within most major ecosystems. In my first chapter, I provide the largest-yet estimate of the snake tree of life using maximum likelihood on a supermatrix of 1745 taxa (1652 snake species + 7 outgroup taxa) and 9,523 base pairs from 10 loci (5 nuclear, 5 mitochondrial), including previously unsequenced genera (2) and species (61). I then …

Assessing The Impact Of Historical Story Telling On Student Learning Of Natural Selection, Janice Marie Fulford

Dissertations

Research suggests that because of its historical nature, the learning of evolutionary biology is problematic compared to that of other science disciplines. While explanations used in historical sciences often employ historical narratives, which are distinct from narratives in other contexts, such as stories, the two types of narratives have structural similarities that suggest the potential role of stories based in the history of science for the teaching of evolutionary biology. Stephen Klassen, a prominent science educator, has studied how stories from the history of physics can promote the learning of and attitudes towards science. Klassen’s pioneering work identifies structural components …

Slavery, Welfare And The Sixth Extinction, Stephen R. Clark

Animal Sentience

Ng’s laudable concern for animal welfare would be welcome to any sensible slave-owner wishing to preserve his investment. What welfarism – for slave-owners and animal husbandmen – fails to call into question is whether we have the right to breed, hold captive and kill animals at all: If it matters, as the widely recognized slogan of ‘Five Freedoms’ suggests, that animals have the chance to live a ‘normal’ life, then more matters than keeping them ‘happy’ in subjection. Their lives – and also the lives of wild things – also deserve respect.

Investigating Physiological Collaborations Between A Lower Termite And Its Symbionts, Brittany F. Peterson

Open Access Dissertations

This project was completed in an effort to better understand the contributions of symbiotic microbes to the biology of Reticulitermes flavipes, the eastern subterranean termite. Lower-termites, like R. flavipes, house symbionts from all three domains of life within their hindgut paunch. This intimate association is reflected in nearly every aspect of termite biology. Here, I investigate these physiological collaborations as they relate to digestion and immunity. My efforts focused on 1) quantifying the role of bacteria in wood digestion within the termite gut, 2) evaluating the role of symbionts in protection against pathogens, and 3) identifying gene products that bacterial …

Beyond The Adaptationist Legacy: Updating Our Teaching To Include A Diversity Of Evolutionary Mechanisms, Rebecca M. Price, Kathryn E. Perez

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

A paradigm shift away from viewing evolution primarily in terms of adaptation - the "adaptationist programme" of Gould and Lewontin - began in evolutionary research more than 35 years ago, but that shift has yet to occur within evolutionary education research or within teaching standards. We review three instruments that can help education researchers and educators undertake this paradigm shift. The instruments assess how biology undergraduates understand three evolutionary processes other than natural selection: genetic drift, dominance relationships among allelic pairs, and evolutionary developmental biology (evo-devo). Testing with these instruments reveals that students often explain a diversity of evolutionary mechanisms …

Benefits Of Size Dimorphism And Copulatory Silk Wrapping In The Sexually Cannibalistic Nursery Web Spider, Pisaurina Mira, Alissa G. Anderson, Eileen Hebets

Eileen Hebets Publications

In sexually cannibalistic animals, male fitness is influenced not only by successful mate acquisition and egg fertilization, but also by avoiding being eaten. In the cannibalistic nursery web spider, Pisaurina mira, the legs of mature males are longer in relation to their body size than those of females, and males use these legs to aid in wrapping a female’s legs with silk prior to and during copulation. We hypothesized that elongated male legs and silk wrapping provide benefits to males, in part through a reduced likelihood of sexual cannibalism. To test this, we paired females of random size with …

Biogeographical Patterns In The Hard-Tick Genus Amblyomma Koch 1844 (Acari: Ixodidae), Matthew H. Seabolt

College of Graduate Studies: Theses & Dissertations

Amblyomma Koch is a genus of hard-ticks with approximately 130 species. Its geographical range is typical for organisms with a Gondwanan origin. A majority of these species are endemic to the Neo- and Afrotropical regions, with the remaining taxa dispersed throughout Southeast Asia, Australia and the Pacific islands. Based on this distribution, we hypothesize that the genus dispersal patterns will mirror the fragmentation and continental drift of the Gondwanan supercontinent. Maximum parsimony, maximum likelihood, Bayesian inference and node-dating analyses of nuclear 18S rDNA gene sequences reveal a more recent origin and radiation patterns within the genus and suggest that Amblyomma …

Fish Pain: An Inconvenient Truth, Culum Brown

Animal Sentience

Whether fish feel pain is a hot political topic. The consequences of our denial are huge given the billions of fish that are slaughtered annually for human consumption. The economic costs of changing our commercial fishery harvest practices are also likely to be great. Key outlines a structure-function analogy of pain in humans, tries to force that template on the rest of the vertebrate kingdom, and fails. His target article has so far elicited 34 commentaries from scientific experts from a broad range of disciplines; only three of these support his position. The broad consensus from the scientific community is …

Pain-Capable Neural Substrates May Be Widely Available In The Animal Kingdom, Edgar T. Walters

Animal Sentience

Neural and behavioral evidence from diverse species indicates that some forms of pain may be generated by coordinated activity in networks far smaller than the cortical pain matrix in mammals. Studies on responses to injury in squid suggest that simplification of the circuitry necessary for conscious pain might be achieved by restricting awareness to very limited information about a noxious event, possibly only to the fact that injury has occurred, ignoring information that is much less important for survival, such as the location of the injury. Some of the neural properties proposed to be critical for conscious pain in mammals …

Pain And Fish Welfare, Eliane Gonçalves-De-Freitas

Animal Sentience

The evolutionary approach of Key’s (2016) target article, generically comparing humans with fish of all kinds, is simplistic. The author ignores published research on structural and molecular aspects of pain in fish. The target article reads more like a selective polemic against fish welfare than an even-handed analysis.

Essential Questions, Imsa Biology Team

Evolution

In order to understand the current state of biological life and how it has changed over time, the following questions must be addressed:

Evidence Of Evolution 1: Structures, Imsa Biology Team

Evolution

In order to investigate linage, evolutionary history, and common ancestry, you need to be familiar with the following structures.

Mechanisms And Speciation 1: The Modern Synthesis, Imsa Biology Team

Evolution

The Modern Synthesis or Synthetic Theory of Evolution is an explanation of evolution that is based on modern genetic principles. According to the Modern Synthesis (a.k.a. Neo-Darwinism):

Evolution Practice 1, Imsa Biology Team

Evolution

Answer the following questions using information from the handouts, and examples from the LAB

Evolution Practice 2, Imsa Biology Team

Evolution

Evolution Problems

Genetic Drift Simulation, Imsa Biology Team

Evolution

Genetic drift can be defined as a random fluctuation in gene frequency. More specifically, it tells us that different alleles may increase or decrease in a population in proportion to one another over time, just by chance, rather than due to any fitness advantage.