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2017

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Articles 121 - 150 of 185

Full-Text Articles in Evolution

Are Weevils Picky Eaters? Community Structure And Host Specificity Of Neotropical Saproxylic Beetles (Coleoptera: Curculionidae), Jhunior A. Morillo Jan 2017

Are Weevils Picky Eaters? Community Structure And Host Specificity Of Neotropical Saproxylic Beetles (Coleoptera: Curculionidae), Jhunior A. Morillo

Dissertations and Theses

Abstract Primary saproxylic beetles play a major role in forest nutrient cycling and making deadwood accessible to other decomposers. Understanding beetle host preferences and patterns of community assembly is critical for their conservation, and for predicting which species might become invasive. This project aims to investigate the ecological and host specificity, as well as the community composition of curculionids in a mosaic of old-growth (OG) and secondary forest on the Osa Peninsula, Costa Rica. The subfamily Scolytinae was expected to be the most species-rich and abundant. Ambrosia beetles were expected to have more generalist species than other curculionids. Old growth …

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A Phylogenetic And Environmental Analysis Of Brazilian Placosoma Lizards, Kai A. Farje-Van Vlack Jan 2017

A Phylogenetic And Environmental Analysis Of Brazilian Placosoma Lizards, Kai A. Farje-Van Vlack

Dissertations and Theses

Placosoma is a genus comprised of the Brazilian spectacled lizards P. champsonotus, P. cipoense, P. cordylinum, P. glabellum, and P. limaverdorum. While P. champsonotus, P. cordylinum, and P. glabellum occupy the southern coast of Brazil, P. cipoense is found in the montane grasslands north of that range, and P. limaverdorum was recently discovered in forest isolates that persist within the semi-arid Caatinga. This study elucidates the ecological and evolutionary relationships among these morphologically similar lizards. Using mitochondrial and nuclear gene sequences, genus-wide phylogenies were inferred through Bayesian inference and a species tree approach, …

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Alá Es Primero: Faith And Culture On The Mexican-American Border, Alan Ventura Jan 2017

Alá Es Primero: Faith And Culture On The Mexican-American Border, Alan Ventura

Open Access Theses & Dissertations

The purpose of this Thesis is to show how El Paso Latino Muslims create a new cultural language when they harmonize their Mexican cultural practices with Islam.

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Dissonance Reduction In Nonhuman Animals: Implications For Cognitive Dissonance Theory, Cindy Harmon-Jones, Nick Haslam, Brock Bastian Jan 2017

Dissonance Reduction In Nonhuman Animals: Implications For Cognitive Dissonance Theory, Cindy Harmon-Jones, Nick Haslam, Brock Bastian

Animal Sentience

We review the evidence for dissonance reduction in nonhuman animals and examine the alternative explanations for these effects. If nonhuman animals engage in dissonance reduction, this supports the original theory as proposed by Festinger (1957) over the revisions to the theory that focused on the self-concept. Evidence of animal sentience, including dissonance reduction, may be a source of cognitive dissonance.

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Clarifying Concepts In Cognitive Dissonance Theory, Eddie Harmon-Jones Jan 2017

Clarifying Concepts In Cognitive Dissonance Theory, Eddie Harmon-Jones

Animal Sentience

This commentary on Zentall’s target article focuses primarily on clarifying some postulates and variables in cognitive dissonance theory. I discuss the adaptive motivational functions of dissonance arousal and dissonance reduction, and attempt to clarify some past dissonance experiments and to tease apart a dissonance theory and contrast explanation of effort-justification-type effects. The evidence and arguments reviewed here support the explanatory power of cognitive dissonance theory in a wide variety of circumstances in human and nonhuman animals, but they depend on first defining concepts such as “cognitions” quite broadly, as Festinger did when he originally proposed the theory.

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The Potential For Sentience In Fishes, Jay R. Stauffer Jr. Jan 2017

The Potential For Sentience In Fishes, Jay R. Stauffer Jr.

Animal Sentience

Balcombe’s book is filled with information on the biology, behavior, and life history of fishes. I do not agree with all his premises. I am still somewhat perplexed about the discussion of whether fish feel pain; I am not sure whether the distinction between nociception and pain makes any difference. Overall, however, his treatment of the principles of both natural and sexual selection is comprehensive and accurate, and has greatly increased my knowledge and awareness of the biology, ethology, and potential for sentience in fishes. In summary, this work has exposed me to new ideas about how to examine fishes …

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Shoring Up The Precautionary Bar, Jon Mallatt Jan 2017

Shoring Up The Precautionary Bar, Jon Mallatt

Animal Sentience

I offer four ways to reinforce Birch’s precautionary principle so it can be used effectively and practically in deciding which animals to cover by legislation for humane treatment: (1) add one more credible indicator of sentience to the BAR rule; (2) use phylogenetic classification, not the outdated Linnaean classification, to test which animal clades have sentience; (3) disentangle the pain of suffering from sentience; and (4) reconsider the sentient status of decapods and insects to remove potential inconsistencies in the proposed framework.

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What Harmful Practices? The Material Scope Of Animal Protection Legislation, Eze Paez Jan 2017

What Harmful Practices? The Material Scope Of Animal Protection Legislation, Eze Paez

Animal Sentience

Jonathan Birch proposes a criterion for the subjective scope of animal protection legislation. He says nothing about its material scope: which harmful practices it should regulate. I argue, first, that most moral views would agree that the worst forms of animal exploitation should be legally forbidden, even if there will inevitably be disagreement about some cases of animal experimentation. I also argue that, when feasible, there should be legal provisions to help wild animals.

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The Value Of Bayesian Statistics For Assessing Credible Evidence Of Animal Sentience, Anil K. Seth, Zoltan Dienes Jan 2017

The Value Of Bayesian Statistics For Assessing Credible Evidence Of Animal Sentience, Anil K. Seth, Zoltan Dienes

Animal Sentience

Determining what constitutes practically relevant, statistically significant evidence for animal sentience, under the precautionary principle, could be enhanced through Bayesian statistics. A Bayesian approach allows the incorporation of multiple evidence sources through prior probabilities, the tracking of changing evidence across time, and a principled means of adjusting evidentiary bars via Bayes factors.

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Chicken Of The Sea, Jonathan Balcombe Jan 2017

Chicken Of The Sea, Jonathan Balcombe

Animal Sentience

Marino summarizes research showing that chickens perform cognitively and emotionally at a higher level than previously assumed. Here, I describe capacities of teleost fishes that parallel those of chickens, including the ability to recognize human faces, perspective-taking, and referential communication. Research on chickens and on fishes reveals an emerging trend in cognitive ethology: abilities once thought limited to a scant few highly intelligent non-humans may actually occur broadly across taxa.

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Anecdotes Can Be Evidence Too, Heather Browning Jan 2017

Anecdotes Can Be Evidence Too, Heather Browning

Animal Sentience

Birch’s criterion for the precautionary principle imposes a high evidential standard that many cases will fail to meet. Reliable, relevant anecdotal evidence suggestive of animal sentience should also to fall within the scope of the precautionary principle. This would minimize potential suffering (as happened in the case cephalopods) while further evidence is gathered.

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Animal Pain And The Social Role Of Science, Leslie Irvine Jan 2017

Animal Pain And The Social Role Of Science, Leslie Irvine

Animal Sentience

Assuming that all animals are sentient would mean ending their use in most scientific research. This does not necessarily imply an unscientific or anti-scientific stance. Examining the social role of science reveals its considerable investment in preserving the status quo, including the continued use of animal subjects. From this perspective, the use of animal subjects is a custom that science could move beyond, rather than a methodological requirement that it must defend.

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Fishes Are Gaining Academic Respect, Jonathan Balcombe Jan 2017

Fishes Are Gaining Academic Respect, Jonathan Balcombe

Animal Sentience

I respond to five commentaries on my 2016 book What a Fish Knows. The commentaries express more harmony than dissent about my interpretation of fishes as cognitive, aware individuals deserving better treatment by humankind.

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A Risk Assessment And Phylogenetic Approach, Culum Brown Jan 2017

A Risk Assessment And Phylogenetic Approach, Culum Brown

Animal Sentience

The precautionary principal is often invoked when talking about the evidence of sentience in animals, largely because we can never be certain what any animal is thinking or feeling. Birch (2017) offers a preliminary framework for the use of the precautionary principal for animal sentience combining an epistemic rule with a decision rule. I extend this framework by adding an evolutionary phylogentic approach which spreads the burden of proof across broad taxonomic groups and a risk assessment component which magnifies the likely impact by the number of animals involved.

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The “Precautionary Principle” – A Work In Progress, Shelley Adamo Jan 2017

The “Precautionary Principle” – A Work In Progress, Shelley Adamo

Animal Sentience

The target article by Birch illustrates the practical difficulties with the “Animal Sentience Precautionary Principle” (ASPP) while presenting potential solutions. However, the ASPP will be difficult to use without guidelines detailing how evidence of sentience should be assessed. Moreover, extrapolating conclusions found for a single species to all species within an Order is problematic. Finally, I recommend that Birch demonstrate his ASPP framework using a controversial test case to help show how it could be used in real-world situations.

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What If All Animals Are Sentient?, Arthur S. Reber Jan 2017

What If All Animals Are Sentient?, Arthur S. Reber

Animal Sentience

Birch develops a useful framework for determining when the Animal Sentience Precautionary Principle (ASPP) should be invoked. He rightly notes that there is a lack of agreement among social scientists, ethicists, and legislators even about whether the precautionary principle is useful, let alone when and how it should be implemented. His proposal is to establish a kind of cognitive threshold, and only when an animal shows a sufficient level of sentience would the ASPP be appropriate. From the point of view of the Cellular Basis of Consciousness model (Reber, 2016), all animals are sentient. If correct, the problems Birch identifies …

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Scientific Uncertainty And The Animal Sentience Precautionary Principle, Michael L. Woodruff Jan 2017

Scientific Uncertainty And The Animal Sentience Precautionary Principle, Michael L. Woodruff

Animal Sentience

Jonathan Birch offers the animal sentience precautionary principle (ASPP) as a framework for assigning sentience to animals. In doing this, he defines a BAR which when crossed will lead to action (ACT) and implementation of the ASPP. His effort to create a clear empirical basis for implementation of the precautionary principle in the area of animal welfare regulation is important. I argue, however, that his BAR is so low that the evidence supporting ACT is in danger of being overwhelmed by the problems of induction and the underdetermination of theory by evidence. If this happens, policy makers might well disregard …

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Cognitive Dissonance Or Contrast? It Could Be Both, Thomas Zentall Jan 2017

Cognitive Dissonance Or Contrast? It Could Be Both, Thomas Zentall

Animal Sentience

My target article suggested that cognitive dissonance may be accounted for by a simpler mechanism: contrast. Whether contrast can explain all cognitive dissonance effects is an empirical question, but it is always useful to try to distinguish simpler mechanisms from more complex cognitive ones. The insistence that cognitive dissonance is a human-only process quite different from contrast may be a self-serving means of justifying the exploitation of animals.

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What Can Vigilance Tell Us About Fear?, Guy Beauchamp Jan 2017

What Can Vigilance Tell Us About Fear?, Guy Beauchamp

Animal Sentience

Animal vigilance is concerned with the monitoring of potential threats caused by predators and conspecifics. Researchers have argued that threats are part of a landscape of fear tracking the level of risk posed by predators and conspecifics. Vigilance, which is expected to vary with the level of risk, could thus be used as a measure of fear. Here, I explore the relationship between vigilance and fear caused by predators and conspecifics. The joint occurrence of vigilance and other physiological responses to fear, such as increased heart rate and stress hormone release, would bolster the idea that vigilance can be a …

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Individual Variation In Fear Behaviour, Rob Found Jan 2017

Individual Variation In Fear Behaviour, Rob Found

Animal Sentience

Individual variation in behaviour adds another layer of complexity to studies of animal responses to fear and risk, but when individual responses are consistent, and correlated with other behaviours, these patterns can provide a structure that furthers our understanding. I interpret Beauchamp’s review of vigilance and fear from the perspective of my own studies of elk personality. Wild elk responses to changing stimuli (benign or aversive) illustrate how personality is a key factor in explaining variation in vigilance and fear behavior. Personality even influences how wildlife can learn to assess risk and adjust their fear responses accordingly.

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Considering Side Biases In Vigilance And Fear, Lesley J. Rogers Jan 2017

Considering Side Biases In Vigilance And Fear, Lesley J. Rogers

Animal Sentience

Measures of vigilance and fear might be more consistently associated if side biases are taken into account, because the right side of the brain is specialised to detect predators and to express fear responses. In species with eyes positioned laterally and with relatively small binocular fields, this brain asymmetry is manifested as eye preferences because each eye sends most of its input to be processed in the opposite side of the brain. Hence, responses elicited by stimuli on the animal’s left side are more likely be associated with fear than are responses to the same stimuli on the animal’s right …

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Cautions About Precautions, Jay R. Stauffer Jr. Jan 2017

Cautions About Precautions, Jay R. Stauffer Jr.

Animal Sentience

Assuming an animal to be sentient in the absence of conclusive evidence to the contrary is an extreme position, hence it should not and could not be the default assumption. Birch explains how the precautionary principle may be used to substantiate decisions to give the animal the benefit of doubt. Although I am reluctant to accept all of his points, Birch has provided an excellent argument for the use of the precautionary principle for the detection of animal sentience. I agree that more research is needed to refine and understand this relationship.

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Not Statistically Significant, But Still Scientific, Rachael L. Brown Jan 2017

Not Statistically Significant, But Still Scientific, Rachael L. Brown

Animal Sentience

Birch’s formulation is persuasive but not nuanced enough to capture at least one situation where it is reasonable to invoke the precautionary principle (PP): when we have multiple, weak, but convergent, lines of evidence that a species is sentient, but no statistically significant evidence of a single credible indicator of sentience within the order as required by BAR. I respond to the worry that if we include such cases in our framework for applying the PP, we open ourselves to the charge of being “unscientific.”

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¬Multilocus Phylogeny Of The Lichen Family Megasporaceae, Tim B. Wheeler Jan 2017

¬Multilocus Phylogeny Of The Lichen Family Megasporaceae, Tim B. Wheeler

Graduate Student Theses, Dissertations, & Professional Papers

The lichen symbiosis is one of the oldest studied mutualisms; in fact, Frank and De Bary coined the term "symbiosis" while studying lichens (Frank, 1877; De Bary 1879). The widespread, stable association between the mycobiont and photobiont in lichens offers an ideal system for the study of co-evolution. The recent application of molecular data to lichens has begun to unveil the complexities involved in these associations (Upreti et al. 2015, Spribille et al. 2016). Lichenized fungi make up a huge fraction of fungal diversity (Nash 2008), yet very little is known of their genetic diversity. Fungal taxonomy is notoriously difficult …

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Evolution Of Molt Phenology In Dwarf Hamsters, Zachary Clare-Salzler Jan 2017

Evolution Of Molt Phenology In Dwarf Hamsters, Zachary Clare-Salzler

Graduate Student Theses, Dissertations, & Professional Papers

Environmental seasonality presents many challenges for survival. In response, organisms from across the tree of life exhibit adaptive phenology, which can facilitate survival from season to season. In particular, many species are white in the winter and brown in the summer where winter snow cover alters the visual environment. There is an extensive body of literature describing the physiological and cellular regulation of this trait in the Siberian dwarf hamster (Phodopus sungorus), but there are major shortcomings in our understanding concerning the evolution and molecular regulation of mammalian skin phenology. Notably, little is known about the genetic basis …

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Contributions Of Gene Copy Number Variation To Genome Evolution And Local Adaptation Of The Cyanobacterium Acaryochloris, Amy L. Gallagher Jan 2017

Contributions Of Gene Copy Number Variation To Genome Evolution And Local Adaptation Of The Cyanobacterium Acaryochloris, Amy L. Gallagher

Graduate Student Theses, Dissertations, & Professional Papers

Acaryochloris is a recently discovered genus of cyanobacteria, unique in its use of an uncommon chlorophyll as its major photosynthetic pigment, and in its peculiar genome dynamics. Members of this genus exhibit increased genic copy number variation (CNV), which is thought to be primarily derived from gene duplications and horizontal gene transfer (HGT). Acaryochloris provides an ideal system to explore mechanisms behind maintenance of gene duplicates and the influence of CNV in local adaptation. Here, I propose a mechanism for retention of gene duplicates of the bacterial recombinase, RecA, in Acaryochloris genomes and provide preliminary evidence that these paralogs are …

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Neutral And Adaptive Genetic Variation In North American Hardwood Tree Species, Sudhir Khodwekar Jan 2017

Neutral And Adaptive Genetic Variation In North American Hardwood Tree Species, Sudhir Khodwekar

Dissertations, Master's Theses and Master's Reports

'Northern Hardwoods,’ are a characteristic composition of multiple tree species and a part of the rich and diverse northeastern forests. Hardwoods e.g. oaks (Quercus: Fagaceae and Sugar maple), serve as foundation species and offer ecological and economical gains to wildlife and humans. Most of the forest trees go through many biotic and abiotic stresses, for example climate change in their long life span. To overcome these threats and to adapt to changing conditions, tree species need to maintain variation especially in adaptive genes. Therefore, it is necessary to analyze genetic diversity within forest tree populations and take appropriate …

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Dogs Consciously Experience Emotions: The Question Is, Which?, Ralph Adolphs Jan 2017

Dogs Consciously Experience Emotions: The Question Is, Which?, Ralph Adolphs

Animal Sentience

I discuss three themes related to Kujala’s target article. First, the wealth of emerging data on cognitive studies in dogs will surely show that dogs have a very rich repertoire of cognitive processes, for most of which we find homologues in humans. Second, understanding the internal states that mediate social behaviors, such as emotions, requires us to consider both a dog’s behaviors with other dogs, and the emergence of new behavioral patterns in interaction with humans. Third, all of this will certainly narrow the range of justifications for denying that dogs have subjective experiences of emotions.

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The Study Of Emotion In Animals, Thomas R. Zentall Jan 2017

The Study Of Emotion In Animals, Thomas R. Zentall

Animal Sentience

The responsiveness of dogs to humans encourages us to attribute human-like emotions to them. Indirect evidence for emotions in other animals can be obtained but one must be careful to find means of distinguishing what we believe to be evidence for such emotions from simpler mechanisms. For example, is a dog’s growl an indication of anger, fear, or possibly an unemotional defense of territory? By carefully designing experiments, we may be able to rule out alternative accounts and show better evidence for underlying emotions.

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Direct Perception Of Animal Mind, Paul Morris Jan 2017

Direct Perception Of Animal Mind, Paul Morris

Animal Sentience

Kujala’s (2017) target article is ostensibly focused on how everyday folk (fail to) make sense of canine emotions. However, the theories outlined in the article apply to making sense of all aspects of the mentality of both human and non-human animals. The target article neglects the fundamental arguments surrounding the problem of other minds. I explore the relevant arguments and briefly review approaches suggesting that our everyday-life sense that both human and non-human animals are thinking, feeling, emotional beings has a secure epistemological basis.

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