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Articles 121 - 150 of 155
Full-Text Articles in Evolution
Sediment Loss Of Santa Rosa Island Slopes: An Erosional Study, Michael Perez
Sediment Loss Of Santa Rosa Island Slopes: An Erosional Study, Michael Perez
STAR Program Research Presentations
Ranching began on Santa Rosa Island in the 1840’s, consequently introducing nonnative megafauna that put novel selective grazing pressures on endemic plant species. Their movement patterns also altered sediment integrity as the land was denuded of any stabilizing vegetation. Dense groves of island oak (Q. tomentella) are known to aid in sediment deposition and retention. The groves also function to collect water during periods of intense fog that are common to the island. This experiment sought to quantify the volume of sediment that has been lost on a south facing slope in the middle of the island that …
Microsatellite Analysis Of Population Structure In The Santa Ana Speckled Dace (Rhinicthys Osculus), Stacey A. Nerkowski
Microsatellite Analysis Of Population Structure In The Santa Ana Speckled Dace (Rhinicthys Osculus), Stacey A. Nerkowski
Electronic Theses, Projects, and Dissertations
Rhinichthys osculus, the Speckled Dace, is one of the most ubiquitous fish in western North America. Within the Southern California region, the local taxon is known as the Santa Ana Speckled Dace. The purpose of this study was to characterize and identify polymorphic microsatellite markers for R. osculus in which twenty-three were identified through Illumina pair-end sequencing. Seven of these loci were then used to examine the patterns of genetic variation and population structure that occurred within and among the watersheds in the Southern California. The study also examined the regional relationships among Southern California, Central California and Owen’s …
A Homogenizing Process Of Selection Has Maintained An 'Ultra-Slow' Acetylation Nat2 Variant In Humans, Blandine Patillon, Pierre Luisi, Estella S. Poloni, Sotiria Boukouvala, Pierre Darlu, E. Genin, Audrey Sabbagh
A Homogenizing Process Of Selection Has Maintained An 'Ultra-Slow' Acetylation Nat2 Variant In Humans, Blandine Patillon, Pierre Luisi, Estella S. Poloni, Sotiria Boukouvala, Pierre Darlu, E. Genin, Audrey Sabbagh
Human Biology Open Access Pre-Prints
N-acetyltransferase 2 (NAT2) is an important enzyme involved in the metabolism of a wide spectrum of naturally occurring xenobiotics, including therapeutic drugs and common environmental carcinogens. Extensive polymorphism in NAT2 gives rise to a wide interindividual variation in acetylation capacity which influences individual susceptibility to various drug-induced adverse reactions and cancers. Striking patterns of geographic differentiation have been described for the main slow acetylation variants of the NAT2 gene, suggesting the action of natural selection at this locus. In the present study, we took advantage of the whole-genome sequence data available from the 1000 Genomes project to investigate the …
Joint Phenotypes, Evolutionary Conflict And The Fundamental Theorem Of Natural Selection, David C. Queller
Joint Phenotypes, Evolutionary Conflict And The Fundamental Theorem Of Natural Selection, David C. Queller
Biology Faculty Research
Multiple organisms can sometimes affect a common phenotype. For example, the portion of a leaf eaten by an insect is a joint phenotype of the plant and insect and the amount of food obtained by an offspring can be a joint trait with its mother. Here, I describe the evolution of joint phenotypes in quantitative genetic terms. A joint phenotype for multiple species evolves as the sum of additive genetic variances in each species, weighted by the selection on each species. Selective conflict between the interactants occurs when selection takes opposite signs on the joint phenotype. The mean fitness of …
A Male Spider’S Ornamentation Polymorphism Maintained By Opposing Selection With Two Niches, Bo Deng, Alex Estes, Brett Grieb, Douglas Richard, Brittney Hinds, Eileen Hebets
A Male Spider’S Ornamentation Polymorphism Maintained By Opposing Selection With Two Niches, Bo Deng, Alex Estes, Brett Grieb, Douglas Richard, Brittney Hinds, Eileen Hebets
Eileen Hebets Publications
The Levene mechanism to maintain genotypic polymorphism by opposing selection on genotypes in multiple niches was proposed 60 years ago, and yet no systems were found to satisfy the mechanisms rather restrictive conditions. Reported here is such an example that a wolf spider population lives in a habitat of mixed rocks and leafy litter for which the females are phenotypically indistinguishable and the males have two distinct phenotypes subject to opposing selection with respect to the substrates. Census data is best-fitted to a population genetics model of the Levene type. A majority of the best fit support polymorphism, with many …
Inter-And Intra-Population Variability Across The Transcriptome Of Lake Baikal’S Endemic Copepod With Ramifications For Adapting To Climate Change, Larry L. Bowman Jr
Inter-And Intra-Population Variability Across The Transcriptome Of Lake Baikal’S Endemic Copepod With Ramifications For Adapting To Climate Change, Larry L. Bowman Jr
Electronic Theses and Dissertations
The future of Lake Baikal’s biodiversity is uncertain in response to climate change. Unlike its diverse benthos, Lake Baikal’s zooplankton is species poor, with up to 96% of its biomass being composed of a single Calanoid copepod species, Epischura baikalensis. This study characterizes the genetic differentiation and differential gene expression of E. baikalensis. Using partial-transcriptome sequences obtained by 454 Rosche and Illumina sequencing technologies, the genetic differentiation at inferred single nucleotide polymorphism (SNP) sites and differential gene expression in populations sampled from various parts of the lake were analyzed. The functional genomics of genes showed significant differential …
The Prevalence And Effect Of Wolbachia Infection On The Brown Widow Spider (Latrodectus Geometricus), Brittany Dane' Arrington
The Prevalence And Effect Of Wolbachia Infection On The Brown Widow Spider (Latrodectus Geometricus), Brittany Dane' Arrington
College of Graduate Studies: Theses & Dissertations
Wolbachia was recently identified in the Brown Widow Spider (Latrodectus geometricus). This symbiont has not previously been found in this genus, therefore the consequences on the host’s population dynamics are unknown. The frequency of endosymbiont infection can provide insight into the population dynamics of the host as this bacteria is known to alter host life history. In my 1st chapter I determine the prevalence of Wolbachia pipentis infection in in the Brown Widow Spider (Latrodectus geometricus) from five locations in the Southeastern United States. Infection frequency differed significantly among sampling locations, ranging from 20% to …
Tactical Escape Behavior And Performance Of A Small Sceloporine Lizard In Two High Risk Habitats, Seth Parker
Tactical Escape Behavior And Performance Of A Small Sceloporine Lizard In Two High Risk Habitats, Seth Parker
College of Graduate Studies: Theses & Dissertations
The negotiation of uneven and complex terrain has implications for many small terrestrial vertebrates. Variation in the running surface due to obstacles like woody debris or vegetation can alter escape paths and running performance. Additionally, these microhabitat features can influence behavioral tactics in complex environments. The ability to negotiate physical barriers in dense environments likely influences survivorship through important ecological tasks, such as finding mates, foraging, and evading predators. The Florida scrub lizard (Sceloporus woodi) is a small, rare species endemic to two distinct and structurally complex environments in Florida, i.e. sand-pine scrub and longleaf pine-wiregrass sand-hills. The …
Generalist And Specialist Pollination Syndromes: When Are They Favoured? A Theoretical Approach To Predict The Conditions Under Which A Generalist Or Specialist Pollination Syndrome Is Favoured., Tyler L. Poppenwimer
Generalist And Specialist Pollination Syndromes: When Are They Favoured? A Theoretical Approach To Predict The Conditions Under Which A Generalist Or Specialist Pollination Syndrome Is Favoured., Tyler L. Poppenwimer
Senior Independent Study Theses
No abstract provided.
Landscape Genetics Of Leaf-Toed Geckos In The Tropical Dry Forest Of Northern Mexico, Christopher Blair, Victor H. Jimenez-Arcos, Fausto R. Mendez De La Cruz, Robert W. Murphy
Landscape Genetics Of Leaf-Toed Geckos In The Tropical Dry Forest Of Northern Mexico, Christopher Blair, Victor H. Jimenez-Arcos, Fausto R. Mendez De La Cruz, Robert W. Murphy
Publications and Research
Habitat fragmentation due to both natural and anthropogenic forces continues to threaten the evolution and maintenance of biological diversity. This is of particular concern in tropical regions that are experiencing elevated rates of habitat loss. Although less well-studied than tropical rain forests, tropical dry forests (TDF) contain an enormous diversity of species and continue to be threatened by anthropogenic activities including grazing and agriculture. However, little is known about the processes that shape genetic connectivity in species inhabiting TDF ecosystems. We adopt a landscape genetic approach to understanding functional connectivity for leaf-toed geckos (Phyllodactylus tuberculosus) at multiple sites …
Filling In The Gaps In Phenology And Life History Of The Cumberland Plateau Salamander (Plethodon Kentucki), Robert C. Bowers
Filling In The Gaps In Phenology And Life History Of The Cumberland Plateau Salamander (Plethodon Kentucki), Robert C. Bowers
Theses, Dissertations and Capstones
The Cumberland Plateau Salamander, Plethodon kentucki, is a member of the Plethodon glutinosus complex comprising 16 sibling species, which are best differentiated by range. Few studies have been conducted to gain information on the natural history of P. kentucki. To alleviate this, two sites at Beech Fork State Park in Wayne County, West Virginia were used to study the salamander’s general life history with emphasis on reproduction, phenology, and population size. At each site, three 20m x 20m sample plots were arranged based on viability of the habitat for P. kentucki. Ground searches of all cover objects …
Dietary Preference Of The Queensnake (Regina Septemvittata), Timothy J. Brust
Dietary Preference Of The Queensnake (Regina Septemvittata), Timothy J. Brust
Theses, Dissertations and Capstones
The Queensnake (Regina septemvittata) is a small secretive water snake found throughout the eastern United States. Once common, their numbers have declined to the extent that they are now threatened throughout most of their range, largely the result of pollutant-based reduction in prey species. These snakes are assumed to eat molted crayfish exclusively. For some common crayfish species, molting happens only twice a summer during a two- week period. It has not been documented if Queensnakes eat anything besides crayfish on a regular basis. The purpose of this study was to determine the prey preference of Queensnakes with particular focus …
Family Matters: An Analysis Of Genetic Relatedness Of Tetraclita Rubescens (The Pink Volcano Barnacle) Over Several Spatial Scales At Monterey And Bodega Bay, California, Kelly N. Chang
Scripps Senior Theses
Inbreeding involves the mating of closely related individuals at a higher frequency than at random; this can decrease the average fitness of populations and individuals by reducing the presence of heterozygotes and augmenting the expression of deleterious genes. Since marine invertebrates exhibit widespread dispersal, their potential for inbreeding is often disregarded. The adult sessile state of barnacles creates the potential for inbreeding as a result of necessary copulation between neighboring individuals. Depending on the degree of mixing that occurs during dispersal, closely related individuals or siblings may settle in close proximity, generating the possibility of kin aggregation and consequent inbreeding. …
Comparative Phylogeography Of Central African Duikers Using Non-Invasive Sampling Methods, Stephan Ntie
Comparative Phylogeography Of Central African Duikers Using Non-Invasive Sampling Methods, Stephan Ntie
LSU New Orleans Theses and Dissertations
The present study sets out to assess patterns of evolutionary diversification in central African duikers (subfamily Cephalophinae). The sampling strategy consisted of collecting geo-referenced duiker feces across 43 sites and seven countries. However, several challenges related to the use of non-invasive samples needed to be addressed prior to large scale DNA amplification. First, the best storage method for obtaining DNA from fecal samples needed to be established. Our study revealed that while silica is best for nuclear microsatellite analyses, RNAlater is the best storage medium for maximal mitochondrial amplification. Moreover, extracting DNA as early as possible always provided the …
A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope
A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope
STAR Program Research Presentations
This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …
Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen
Developing Monitoring Methods For Leptasterias Spp. As Sentinel Species In Detecting Local Environmental Changes, Zachary Sturbaum, Kathryn Nuessly, Riley J. Smith, C. Sarah Cohen
STAR Program Research Presentations
Leptasterias spp., a six-rayed sea star, is found in rocky intertidal habitats ranging from Alaska to central California. Leptasterias spp. can be monitored on a broad scale throughout their range by a variety of means using timed counts and random plot censusing in order to detect both large-scale and local-level changes in the environment due to climate change, land-based human activity, or other environmental events. Leptasterias brood their young externally until the embryos grow into fully developed juveniles. These juveniles disperse by crawling away, limiting their dispersal potential. This localized dispersal provides an opportunity to use Leptasterias spp …
The Dynamics Of Location: Influence Of Predation By Chaoborus Larvae On Rotifer Diel Vertical Migration Patterns, Kristina P. Riemer
The Dynamics Of Location: Influence Of Predation By Chaoborus Larvae On Rotifer Diel Vertical Migration Patterns, Kristina P. Riemer
Lawrence University Honors Projects
The locations of freshwater organisms in lakes are determined by the convergence of many competing factors. While predation pressure is one of these, also important are areas of food concentration and the physical and chemical constraints of a system. Diel vertical migration is a behavior exhibited by freshwater organisms in many taxa that is the result of balancing these factors. Diel vertical migration consists of movement by these organisms throughout the water column in accordance with a 24 hour cycle. This oscillation is generally driven by the competing factors of predation pressure and food acquisition, and is modified by physical …
Historical Diversification Of Montane Herpetofauna Within And Between The Sierras Of Mexico, Robert William Bryson Jr.
Historical Diversification Of Montane Herpetofauna Within And Between The Sierras Of Mexico, Robert William Bryson Jr.
UNLV Theses, Dissertations, Professional Papers, and Capstones
The Mexican highlands consist of four major mountain ranges spanning most of mainland Mexico. The evolutionary history of the Mexican highlands has been shaped by various geological and climatic events over the past several million years. The relative impacts of these historical events on diversification in montane taxa, however, remains uncertain. I used mitochondrial DNA data from three widely distributed species complexes of lizards as a model system to exemplify the potential roles of Neogene mountain formation and Quaternary climate change on timing and tempo of diversification across the Mexican highlands. My results suggested strong geographic partitioning of genetic variation …
Herbicide-Resistant Risk Assessment: Response Of Common Nebraska Weeds To Dicamba Dose, Roberto J. Crespo
Herbicide-Resistant Risk Assessment: Response Of Common Nebraska Weeds To Dicamba Dose, Roberto J. Crespo
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Dicamba-resistant soybeans are being developed to provide an additional herbicide mechanism of action that can be used in soybean, and to provide a tool to help manage or mitigate the evolution of other herbicide-resistant weed populations. The objectives of this thesis were to assess the risk of common Nebraska weeds developing resistance to dicamba, quantify baseline dose-response to dicamba of high-risk weed species, and survey the variability in dicamba dose-response among populations of those species. Twenty-five weed scientists were asked to estimate the risk likelihood of ten weed species evolving resistance to dicamba following the commercialization of dicamba-resistant soybean. Palmer …
Biology, Systematics, Phylogenetic Analysis And Dna Character-Based Species Diagnosis Of The False Root-Knot Nematode Nacobbus Aberrans (Thorne, 1935) Thorne & Allen 1944 (Nemata: Pratylenchidae), Angel Ramirez-Suarez
Biology, Systematics, Phylogenetic Analysis And Dna Character-Based Species Diagnosis Of The False Root-Knot Nematode Nacobbus Aberrans (Thorne, 1935) Thorne & Allen 1944 (Nemata: Pratylenchidae), Angel Ramirez-Suarez
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
The False Root-Knot nematode Nacobbus aberrans is a plant parasitic nematode that causes yield losses in several crops and plant protection agencies have established regulations to prevent infestations from spreading to new agricultural areas. The taxonomic status of the nematode has been the subject of controversy due to wide degree of variation exhibited by the species. This variability has led to the suggestion that N. aberrans is actually a species complex rather than a single species. In order to test this hypothesis, we compared twelve N. aberrans populations, which include isolates from western Nebraska, two distinct regions of Mexico and …
Multilocus And Parametric Analyses Of The Evolutionary History Of The Amazonian Peacock Cichlids, The Genus Cichla (Teleostei: Cichlidae), Stuart Clayton Willis
Multilocus And Parametric Analyses Of The Evolutionary History Of The Amazonian Peacock Cichlids, The Genus Cichla (Teleostei: Cichlidae), Stuart Clayton Willis
School of Biological Sciences: Dissertations, Theses, and Student Research
Accurate knowledge of species boundaries and species phylogeny are fundamental to testing hypotheses of recent evolutionary processes, but the estimation of these partitions is challenging due both to inherent confusion about what is being estimated as well as the data available to estimate them. Using multilocus data from mtDNA, microsatellites, and nuclear locus sequences of over 1100 individuals, we delimited eight separately evolving species of Cichla rather than the 15 described. Among species we found evidence of rare but widespread introgressive hybridization, while within these species we observed evidence of long-term gene exchange and constrained evolutionary trajectories. In most cases …
Communication For Mate Selection In Anurans: Dominant Frequency Versus Snout-Vent-Length, Shari Jean Kunert
Communication For Mate Selection In Anurans: Dominant Frequency Versus Snout-Vent-Length, Shari Jean Kunert
Department of Environmental Studies: Undergraduate Student Theses
No abstract provided.
Ecological Effects Of Virus-Resistant Transgenic Squash, Holly R. Prendeville
Ecological Effects Of Virus-Resistant Transgenic Squash, Holly R. Prendeville
School of Biological Sciences: Dissertations, Theses, and Student Research
Two ecological risks associated with the use of transgenic crops include the effects of transgene products on non-target organisms and the effects of a transgene after it moves from crops into a wild plant population. In work presented here, we specifically investigate the ecological risks of virus-resistant transgenic squash. We observed pollinator behavior to determine if pollinators are affected by nontarget effects of the virus-resistant transgene. We found that pollinator behavior did differ between conventional and virus-resistant transgenic squash due to pleiotropic effects of the transgene. This difference in pollinator behavior can affect plant mating patterns, thereby affecting crop-wild hybridization …
Alfred Russel Wallace, Geographer, Charles H. Smith
Alfred Russel Wallace, Geographer, Charles H. Smith
DLPS Faculty Publications
Among the great explorers and thinkers who advanced geography in the nineteenth century and helped it evolve into the subject that exists today is a man who is not always connected with the field, Alfred Russel Wallace (1823–1913). Most commonly recognized as ‘the other man’ in the history of the discovery of the principle of natural selection, Wallace’s commitment to the study of landscape and its physical, biological, and human elements was lifelong, and resulted in a wide range of contributions to biogeography, physical geography, human geography, and ethnography. In this year of the double anniversaries of Charles Darwin’s birth …
Assessing Genetic Differentiation Among Populations Of The Invasive Plant Impatiens Glandulifera In Maine, Jordan R. Schoonover
Assessing Genetic Differentiation Among Populations Of The Invasive Plant Impatiens Glandulifera In Maine, Jordan R. Schoonover
Honors Theses
The annual herbaceous plant Impatiens glandulifera Royle is native to the Himalayas and is a significant invasive species in Europe. In the past century, it was introduced to the United States, where it has become established in 12 states. This study evaluated genetic differentiation among four Maine populations, to address a theory that posits hybridization of distinct lineages as a trigger for invasiveness. Regions of microsatellite repeats were evaluated at two polymorphic loci for 41 plants sampled from the four populations. A striking finding was that the observed heterozygosity was substantially higher than the heterozygosity expected from random combination of …
The Very Basics Of Sustainability - An Alternative Viewpoint (Slides With Audio) (Large File! To Speed Up Download, Right-Click On "Download" Link To Save To Own Pc.), Jim Mcgovern
Other resources
This presentation sets out the very basics of ‘sustainability’, although a definition of sustainability is not attempted. Some of the very basics are the context in which the Earth and humankind exist in space and time, the Earth’s climate, the Earth’s population and humankind’s options and choices. The author advocates keeping an open mind on all available options, including the use of oil, gas, coal, tar sands, carbon capture and sequestration, nuclear power etc., as well as the technologies that are more widely considered ‘green’. The author also argues that, in addressing the challenges that humankind faces, globally concerted effort …
Ambystoma Maculatum (Spotted Salamander) Occurrence, Kristine L. Grayson, A. M. Bloch
Ambystoma Maculatum (Spotted Salamander) Occurrence, Kristine L. Grayson, A. M. Bloch
Biology Faculty Publications
Natural History Notes: Ambystoma maculatum is a wide ranging mole salamander found from Nova Scotia and southern Ontario through Georgia and eastern Texas (Conant and Collins 1998).
Longevity-Fertility Trade-Offs In The Tephritid Fruit Fly, Anastrepha Ludens, Across Dietary-Restriction Gradients, James R. Carey, Lawrence G. Harshman, Pablo Liedo, Hans-Georg Müller, Jane-Ling Wang, Zhen Zhang
Longevity-Fertility Trade-Offs In The Tephritid Fruit Fly, Anastrepha Ludens, Across Dietary-Restriction Gradients, James R. Carey, Lawrence G. Harshman, Pablo Liedo, Hans-Georg Müller, Jane-Ling Wang, Zhen Zhang
Lawrence G. Harshman Publications
Although it is widely known that dietary restriction (DR) not only extends the longevity of a wide range of species but also reduces their reproductive output, the interrelationship of DR, longevity-extension and reproduction is not well understood in any organism. Here we address the question: “Under what nutritional conditions do the longevity-enhancing effects resulting from food restriction either counteract, complement or reinforce the mortality costs of reproduction? To answer this question we designed a fine-grained DR study involving 4,800 individuals of the tephritid fruit fly Anastrepha ludens in which we measured sex-specific survival and daily reproduction in females in each …
Historic Genetic Structuring And Paraphyly Within The Great-Tailed Grackle, Jeffrey M. Dacosta, Walter Wehtje, John Klicka
Historic Genetic Structuring And Paraphyly Within The Great-Tailed Grackle, Jeffrey M. Dacosta, Walter Wehtje, John Klicka
Ornithology Program (HRC)
The Great-tailed Grackle (Quiscalus mexicanus) and Boat-tailed Grackle (Q. major) are sister species that have expanded their ranges during historical times. This expansion has created an area of sympatry between these species in Texas and Louisiana, and between distinctive Great-tailed Grackle subspecies in the southwestern United States and northern Mexico. We investigated the evolutionary histories of both species using mitochondrial DNA sequence data and modern phylogenetic methods. Our results reveal genetic structure within Great-tailed, but not Boat-tailed Grackles. Great-tailed Grackles are separated into two clades, but range expansion in the north has led to secondary contact …
A Sex Difference In Seasonal Timing Of Birth In A Livebearing Fish, Eric T. Schultz
A Sex Difference In Seasonal Timing Of Birth In A Livebearing Fish, Eric T. Schultz
EEB Articles
Sex differences in seasonal timing include differences in hatch- or birth-date distribution and differences in the timing of migration or maturation such as protandrous arrival timing (PAT), which is early male arrival at breeding sites. I describe a novel form of protandrous arrival timing, as a sex difference in birth-date distribution in a live-bearing fish (Dwarf Perch, Micrometrus minimus). In this species, birth coincides with arrival at breeding sites because newborn males are sexually active. A series of samples of pregnant females and young of year was collected in Tomales Bay, CA. I analyzed the daily age record in otoliths …