Evolution Commons^™

Genome-Wide Changes In Genetic Diversity In A Population Of Myotis Lucifugus Affected By White-Nose Syndrome, Thomas M. Lilley, Ian W. Wilson, Kenneth A. Field, Deeann Reeder, Megan E. Vodzak, Gregory G. Turner, Allen Kurta, Anna S. Blomberg, Samantha Hoff, Carl J. Herzog, Brent J. Sewall, Steve Paterson

Faculty Journal Articles

Novel pathogens can cause massive declines in populations, and even extirpation of hosts. But disease can also act as a selective pressure on survivors, driving the evolution of resistance or tolerance. Bat white-nose syndrome (WNS) is a rapidly spreading wildlife disease in North America. The fungus causing the disease invades skin tissues of hibernating bats, resulting in disruption of hibernation behavior, premature energy depletion, and subsequent death. We used whole-genome sequencing to investigate changes in allele frequencies within a population of Myotis lucifugus in eastern North America to search for genetic resistance to WNS. Our results show low FST values …

The Bioethical Significance Of “The Origin Of Man’S Ethical Behavior” (October 1941, Unpublished) By Ernest Everett Just And Hedwig Anna Schnetzler Just, Theodore Walker Jr.

Journal of the South Carolina Academy of Science

Abstract –

E. E. Just (1883-1941) is an acknowledged “pioneer” in cell biology, and he is perhaps the pioneer in study of egg cell fertilization. Here we discover that Just also made pioneering contributions to general biology and evolutionary bioethics.

Within Just’s published contributions to observational cell biology, there are substantial fragments of his theory of ethical behavior, a theory with roots in cell biology. In addition to such previously available fragments, Just’s fully developed theory is now available. This recently discovered unpublished book-length manuscript argues for the biological origins of ethical behavior (evolving from cells to humans, within a …

A Literature Review Of Horn And Horn-Like Structures In Vertebrates To Correlate Placement To Function, Behavior, And Niche., J T. Cottingham

Biology Papers and Presentations

In this paper, the true horns of bovids are compared to the many horn-like structures found throughout the animal kingdom. Literary sources were reviewed for a variety of horn-like structures. The review was limited to extinct and extant terrestrial vertebrates. 3D models of these organisms' skulls and “horns” were created or acquired and 3D printed at the same scale to illustrate their differences and similarities and to analysis of their comparative size easier between large and small genera.

Temperate Eurasian Origins Of Hawaiian Chenopodium (Amaranthaceae) Plus Description Of A New Species Endemic To Moloka‘I, Jason T. Cantley, Angela J. Mcdonnell, J Branson, S R. Long, W Garnett, Christopher T. Martine

Faculty Journal Articles

Chenopodium taxa of Hawai‘i are tetraploids distinguished from other members of the circumglobally distributed genus by minute morphological characters. Because of these reasons, the geographic origin of Hawaiian Chenopodium has remained unclear. Across the Hawaiian Archipelago, Chenopodium taxa are morphologically variable and grow in highly disparate xeric habitats, especially in terms of precipitation, temperature, wind, salt spray, and solar irradiation. Habitats include dry subalpine shrublands, sandy beach strand of atolls in the Northwest Hawaiian Islands, dry forests, and precipitously tall sea cliffs of northwestern Moloka‘i. From the Moloka‘i sea cliffs, which are battered by high energy winds, salt spray, and …

Evolutionary Ecology Of The Native Johnny Darter (Etheostoma Nigrum) And The Invasive Round Goby (Neogobius Melanostomus): A Genomic Perspective, Abby Joyce Wicks

Wayne State University Dissertations

Round goby (Neogobius melanostomus) is an invasive fish present in all five Great Lakes and is becoming increasingly common in their tributaries. Johnny darter (Etheostoma nigrum) is a native species that often coexists with round goby. Here, I use traditional population genetic methods and genomic tools to explore the evolutionary ecology of these species. First, historic factors are addressed as a source of variation in study populations by characterizing patterns of mitochondrial DNA variation throughout Lower Michigan. Round goby populations were largely homogenous and exhibited no evidence of overarching historical genetic structure, consistent with the recent invasion and rapid expansion …

The Evolution Of Dragons, Laura J. Mayfield

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Dragons have been depicted in human art as early as 4500 BCE. For centuries, these fantasy creatures have inspired countless folk and fantasy tales, as well as appearing in the art of different cultures around the world. Now there are thousands of different depictions of these huge, flying, fire-breathing lizards, but are any of them possible? In this study, I reference peer-reviewed scientific articles, phylogenetic analysis, and paleoart studies to create biologically-sound dragons. Basing the dragon lineage on a real branch of webbed-winged scansoriopterygids—an extinct family of climbing and gliding maniraptoran dinosaurs—I explored the possible wing-structure, fire-breathing abilities, and effects …

From Organisms To Ecosystems: Impacts Of Limb Loss And Regeneration On Crayfish Behavior, Luc Arnaud Dunoyer

Theses and Dissertations--Biology

The ability of some organisms to regenerate tissues and organs has fascinated naturalists since antiquity, dating back to the earliest accounts of scientific inquiry with Aristotle in Ancient Greece. Then, Darwin’s theory invigorated some scientists’ dream of stimulating (or reactivating) regenerative capacities in human beings by showing that we are related to highly regenerative organisms. More recently, a renewed interest in discovering the molecular and genetic basis for organ and tissue regeneration has led biologists to focus more specifically on a restrictive set of model organisms.

Although the process of limb regeneration is different between invertebrate and vertebrate organisms, it …

From Genes To Species: Ecological Speciation With Gene Flow In Neodiprion Pinetum And N. Lecontei, Emily E. Bendall

Theses and Dissertations--Biology

My dissertation focuses on how differences accumulate across the genome during ecological speciation with geneflow. To do this I used two species of Neodiprionpine sawflies, which are plant-feeding hymenopterans with high host specificity. I used experimental crosses to measure both intrinsic and extrinsic postzygotic isolation and to understand the contribution of specific traits to reproductive isolation. Despite substantial genetic divergence and haploid males in which all recessive incompatibilities should be expressed, I found surprisingly little evidence of intrinsic postzygotic isolation. Recombination in hybrid males may reconstitute viable genotypes and counteract the effects of haploidy in males. Nevertheless, hybrids have …

Extreme Offspring Ornamentation In American Coots Is Favored By Selection Within Families, Not Benefits To Conspecific Brood Parasites, Bruce E. Lyon, Daizaburo Shizuka

School of Biological Sciences: Faculty Publications

Offspring ornamentation typically occurs in taxa with parental care, suggesting that selection arising from social interactions between parents and offspring may underlie signal evolution. American coot babies are among the most ornamented offspring found in nature, sporting vividly orange-red natal plumage, a bright red beak, and other red parts around the face and pate. Previous plumage manipulation experiments showed that ornamented plumage is favored by strong parental choice for chicks with more extreme ornamentation but left unresolved the question as to why parents show the preference. Here we explore natural patterns of variation in coot chick plumage color, both within …

The Influence Of Breeding Density On Female Aggression, Parental Care, And Ornamentation In A Secondary-Cavity Nesting Warbler, Elsa B. Chen

Theses and Dissertations

Tradeoffs between individual survival and reproductive success associated with aggressive behaviors are a driving force of evolution, but these tradeoffs are often overlooked for aggressive conspecific interactions between females. For avian males, it is well documented that more aggressive individuals tend to provide less parental care. In the few studies that address this in females, the tradeoffs seem to be more context-dependent, varying due to factors such as predation pressure and habitat quality. The relationship between female ornamentation and aggression is similarly understudied, but evidence suggests that both aggression and ornamentation are important traits involved in social selection – the …

Interspecific Gene Flow Potentiates Adaptive Evolution In A Hybrid Zone Formed Between Pinus Strobiformis And Pinus Flexilis, Mitra Menon

Theses and Dissertations

Species range margins are often characterised by high degrees of habitat fragmentation resulting in low genetic diversity and higher gene flow from populations at the core of the species range. Interspecific gene flow from a closely related species with abutting range margins can increase standing genetic diversity and generate novel allelic combinations thereby alleviating limits to adaptive evolution in range margin populations. Hybridization driven interspecific gene flow has played a key role in the demographic history of several conifer due to their life history characteristics such as weak crossability barriers and long generation times. Nevertheless, demonstrating whether introgression is adaptive …

Spatial And Temporal Genetic Structure Of Winter-Run Steelhead (Oncorhynchus Mykiss) Returning To The Mad River, California, Steven R. Fong

Cal Poly Humboldt theses and projects

Distinct populations of steelhead in the wild are in decline. The propagation of steelhead in hatcheries has been used to boost population numbers for recreational fisheries and for use in conservation. However, hatchery breeding practices of steelhead can result in changes in genetic structure. I investigated the genetic structure of winter-run steelhead (Oncorhynchus mykiss) returning to the Mad River, California, where a hatchery has been used enhance production for recreational fisheries since 1971. Genetic variability in Mad River steelhead was evaluated using 96 single nucleotide polymorphisms (SNPs) among 4203 individuals, including the Mad River and nearby locations, and …

Plasticity And The Impact Of Increasing Temperature On A Tropical Ectotherm, Adam A. Rosso

College of Graduate Studies: Theses & Dissertations

Organisms may respond to climate change through behavior, genetic adaptation, and/or phenotypic plasticity. Tropical ectotherms are thought to be especially vulnerable to climate change because most have a narrow range of thermal tolerance while living close to their upper thermal tolerance limits. Additionally, many tropical species live in closed-canopy forests, which provide homogenous thermal landscapes that prevent behavioral compensation for stressfully warm temperatures. Finally, tropical ectotherms are thought to have decreased capacity for phenotypic plasticity because they have evolved in thermally stable environments. We tested gene expression patterns and phenotypic plasticity in the Panamanian slender anole by a) measuring changes …

Predator-Based Selection And The Impact Of Edge Sympatry On Components Of Coralsnake Mimicry, Lauren E. Wilson

College of Graduate Studies: Theses & Dissertations

Studying warning coloration and mimicry is an effective way to understand predator-driven selection and phenotypic diversity. The presence (sympatry) or absence (allopatry) of a toxic model plays a role in shaping mimetic phenotypes. However, the impact of edge sympatry and allopatry on predation of mimetic phenotypes is not well understood. We studied coralsnake mimicry to test how edge sympatry and allopatry affect predation on mimetic phenotypes. Specifically, we tested 1) if overall attack rates varied with edge sympatry of coralsnakes 2) which color patterns conferred a fitness advantage 3) which specific mimetic signal components are important in driving predatory attacks …

Exploring Eight-Armed Intelligence Through Film, Tierney M. Thys

Animal Sentience

Mather (2019) provides a rich overview of the elements underlying octopus cognition and behavioral flexibility. Recently, two remarkable natural history films, My Octopus Teacher and The Octopus in My House have explored intimate human-octopus relationships with a wild (Octopus vulgaris) and a captive octopus (Octopus cyanea) respectively. Both films show rare behaviors that offer observations to test new hypotheses as well as a novel perspective on our own human relationships and place within the natural world. An interview with filmmaker Craig Foster from My Octopus Teacher reveals the profound and transformative power of forming a trusting …

Can Zooplankton On The North American Great Plains ‘Keep Up’ With Climate-Driven Salinity Change?, Mariam Elmarsafy

Theses and Dissertations (Comprehensive)

The Great Plains of North America are projected to become more arid as the climate changes over the next century. Salinity levels for lakes in this region are linked to climate, suggesting that lakes will become more saline as the climate becomes drier. One group of organisms that might be affected by increased salinity levels are the zooplankton, aquatic invertebrates that transfer energy from primary producers to macroinvertebrates and fish. Little is known about the ability of zooplankton to adapt to long-term increases in lake salinity levels. For my thesis, I used resurrection ecology to examine how a common zooplankter, …

Trade-Offs Between Survival And Reproduction In Starvation-Selected Drosophila Melanogaster, Tammara Beeghly

UNLV Theses, Dissertations, Professional Papers, and Capstones

Evolutionary outcomes are demonstrated by traits that affect an organism’s schedule of reproduction and survival. These life history traits are reflected in an organism’s physiology, development and behavior. Environmental changes, such as availability of nutritional resources, can profoundly affect evolutionary outcomes of individuals and populations. When shortages arise, there will be trade-offs in the allocation of resources, where one trait prevails at the expense of another.

In the laboratory, we can mimic conditions in nature and study the specific effects of the conditions that we re-create. In our case, over 100 generations of Drosophila melanogaster have been selected for starvation …

Evolution - #0: Advanced Biological Systems, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

The first unit of Advanced Biological Systems is focused on the theory of evolution, the mechanisms of evolutionary change, and discussions of the biological species concept. We discuss briefly how biodiversity stabilizes ecosystems. A study of biological evolution is placed first in the sequence of our curriculum to establish a foundation that explains the diversity of organisms, as well as biochemical processes, and the ongoing change process we witness today. These concepts will later be utilized in our curriculum to highlight cellular and metabolic diversity, the development of cancers, the interactions of bacteria with the ecosystem of the human host, …

Evolution - #8: Ecosystem Disrupted, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

This is the culminating activity for the evolution unit. For this assignment, students must research into the impact human industry has on a small part of our world. Students have had a brief introduction to the history of the planet and the role that carbon dioxide concentration play in climate change. The role of climate and weather patterns is important in a discussion of a chosen place on the planet. Students have spent a large amount of effort in understanding evolutionary theory and mechanisms and seen it in practice as they read about speciation. With this assignment, students can synthesize …

Evolution - #3: Evolution On The Web, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

This lesson is a companion piece the previous one: Evolutionary Evidences and Inferences. It is completed supported by readings at an online site hosted by The University of California at Berkeley. The site is linked here:

http://evolution.berkeley.edu/evolibrary/article/0_0_0/evo_14

Evolution - #2: Evolutionary Evidence And Inferences, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

The theory of evolution articulates elegantly a series of inferences from a vast collection of observations and evidence. We present some of those evidences here to stimulate in our students the sorts of scientific reasoning necessary to understand the presence and origin of diversity of life on the planet.

Evolution - #1: History Of Life, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

From the perspective of a biologist, the history of life on the Earth is a recurring story. Although details may be different, what happens today has precedence in the occurrences of the past. Two underlying ideas are vital for students to understand a modern conception of the theory of evolution. First, over long periods of time, and due to natural events, the environment of the Earth has changed, sometimes dramatically. Second, each environmental change has created more favorable conditions for some species to live and reproduce, while producing less favorable conditions for others. This first lesson in our unit on …

Evolution - #4: Genetic Drift And Founder Effect, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

Genetic drift is a term used to describe chance fluctuations in the allelic frequencies in a population over time. The effects of genetic drift tend to be very minor in large populations, but they can be quite significant in small populations. Alleles are different functional forms in which a gene might exist. Humans have two alleles, sometimes the same but sometimes different, of most of their genes. In any population, it is possible to determine the frequency of all alleles. If these alleles get passed on to the next generation at random, then we should expect to see approximately the …

Evolution - #6: Selection Simulation, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

A modern understanding of the theory of evolution revolves around the selection of certain types within a population that over long time periods eventually leads to change of the species. This descent with modification is modeled with this activity, and leads to a subsequent lesson that has students reading about research into examples of speciation.

Evolution - #5: Globin Gene Evolution, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

For this lesson, students are guided through the steps necessary to compare nucleotide and amino acid sequences available at the National Center for Biotechnology Information that is maintained by the National Institutes of Health. The lesson starts with an examination of the alpha-globin gene. Alpha-globin is one of the proteins that constitutes hemoglobin. Student look at the various sequences of this gene that have been deposited at NCBI with a goal of determining alternative forms of the gene. The lesson then broadens the scope of comparison to include members of the globin protein family. Students create a phylogenetic tree that …

Evolution - #7: Speciation Jigsaw, Jessica Amacher, Sowmya Anjur, Donald Dosch, Sarah O'Leary-Driscoll, Crystal Randall

Unit 1: Evolution

This is a lesson intended to be complementary to the selection simulation. Whereas the simulation was used to develop a conceptual understanding of selection, the readings done here are used to allow students to see the application of their conceptualized understanding to researched examples of selection and speciation.

Dynamics Of Avian Elevational Ranges Reveal Hidden Evolutionary Forces, Chauncey R. Gadek

Biology ETDs

The distribution of life across the Andes mountains reflects historical elevational-range contraction and expansion. Whereas contraction implies specialization, expansion requires overcoming hidden barriers. Three eco-evolutionary phenomena may drive patterns in rates of elevational range evolution: (1) The Dobzhansky-MacArthur Phenomenon (DMP) predicts lower rates of upward expansion with harsher physical conditions, while downward expansion increases with lower diversity; (2) the evolutionary tendency toward specialization predicts contraction increases when ranges are broad; and (3) natural selection for respiratory performance could suppress expansion across mid-elevations due to gene-environment mismatch. We modeled elevational range shifts of Neotropical landbirds. Contrary to the DMP, upward expansion …

Evaluating The Effect Of Time Of Day On Singing Behavior In Anna’S Hummingbirds, Adrian D. Macedo, Maxine R. Mota

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Systematics Of Carex Section Laxiflorae (Cyperaceae), Jenna Dorey

Dissertations, Theses, and Capstone Projects

Carex, with more than 2100 species, is the most species-rich genus of flowering plants in temperate regions of the world. Members of the family Cyperaceae are colloquially known as sedges, and members of the genus Carex are called “true sedges.” Carex occur on every continent except for Antarctica, they thrive in a panoply of habitats, and are ecologically important as a forage source for wildlife, carbon sequestration, prevention of soil erosion, and providing habitat for fresh water invertebrates. Despite their importance many sedges are still poorly known, such as the woodland sedges in Carex section Laxiflorae, which is …

The ‘Law Of Environmental Dependence’ - Biology And Ethics In The Work Of Ernest Everett Just: + Found – Some 251 Mostly Typed Pages, Theodore Walker

Perkins Faculty Research and Special Events

Abstract-

“The Origin of Man’s Ethical Behavior” (circa October 1941) by Ernest Everett Just and Hedwig A. Schnetzler Just - is an unpublished book manuscript about the biological origins and evolution of ethical behavior, and about “the law of environmental dependence.” Missing since Just’s death in October 1941, it was found and identified in May 2018 among the collected papers of Ernest Everett Just preserved at the Howard University Moorland-Spingarn Research Center in Washington, DC. In addition to the 1996 US postage with the caption “Ernest E. Just, Biologist,” we now have reason to add two new postage stamps with …