Ecology and Evolutionary Biology Commons^™

Book Review: Better Birding: Tips, Tools, And Concepts For The Field. George L. Armistead And Brian L. Sullivan., Stephen J. Dinsmore

The Prairie Naturalist

George Armistead and Brian Sullivan have written a book whose aim is to provide birders with a solid foundation upon which to develop better birding skills. They advocate a more holistic approach to bird identification than simply looking at a set of predetermined field marks. To that end, their approach combines traditional field identification approaches with behavioral and habitat cues, as well as natural history, to broaden bird identification skills. This is not the first book to make a case for looking at bird identification more broadly, although their specific approach seems unique. The authors offer constructive criticism of “traditional” …

Mink Predation Of Brown Trout In A Black Hills Stream, Jake Davis, Jerry W. Wilhite, Steven R. Chipps

The Prairie Naturalist

In the early 2000’s, declines in the brown trout (Salmo trutta) fishery in Rapid Creek, South Dakota, caused concern for anglers and fisheries managers. We conducted a radio telemetry study in 2010 and 2011 to identify predation mortality associated with mink, using hatchery-reared (2010) or wild (2011) brown trout. Estimated predation rates by mink (Mustela vison) on radio-tagged brown trout were 30% for hatchery fish and 32% for wild fish. Size frequency analysis revealed that the size distribution of brown trout lost to predation was similar to that of other, radio-tagged brown trout. In both years, a higher proportion of …

Evaluating The Myth Of Allelopathy In California Blue Gum Plantations, Kristen Marie Nelson

Master's Theses

It is widely accepted that allelopathy is not only significant, but more or less singular, in the inhibition of understory vegetation in California Eucalyptus globulus (blue gum) plantations. However, there is no published documentation of allelopathy by blue gums against California native species. Here, we present evidence that germination and early seedling growth of five California native species are not inhibited by chemical extracts of blue gum foliage, either at naturally-occurring or artificially concentrated levels. In the greenhouse, seeds were germinated in field-collected soil from mature blue gum plantations and the adjacent native, coastal scrub communities. In petri plates, seeds …

The Plight Of Aspen: Emerging As A Beneficiary Of Wolf Restoration On Yellowstone’S Northern Range, John Klaptosky

Aspen Bibliography

No abstract provided.

Plants' Native Distributions Do Not Reflect Climatic Tolerance, Tierney Bocsi, Jenica M. Allen, Jesse Bellemare, John Kartesz, Misako Nishino, Bethany A. Bradley

Biological Sciences: Faculty Publications

Aim: Biogeographers have long known that plant species do not fully encompass their fundamental niche. Nonetheless, in practice, species distribution modelling assumes that plant distributions represent a reasonable approximation of their environmental tolerance. For ecological forecasting, projections of habitat loss due to climate change assume that many species will be unable to tolerate climate conditions outside of those found within their current distributional ranges. We aim to test how well occurrences in the native range approximate the climatic conditions in which plant species can survive.

Location: Continental USA. Methods: We compared the climatic conditions between occurrences in the US native …

Assessing Genetic Variation Of Rocky Mountain Bighorn Sheep At Elk Mountain, Brynn L. Parr, Rebeca L. Juarez, Jonathan A. Jenks

The Prairie Naturalist

The bighorn sheep (Ovis canadensis canadensis) herd occupying the Elk Mountain Region of South Dakota and Wyoming was established in 2001 with 20 individuals. An additional 7 ewes were released in 2004. The population increased to approximately 120 individuals in 2009, but subsequently declined to an estimated 80 individuals. Because of the low population size used to establish the herd and relative isolation of the Elk Mountain Region, potential factors associated with the population decline included reduced genetic diversity. Our objectives were to: 1) assess genetic diversity, 2) measure effective population size (Ne), and 3) compare the genetic diversity of …

Keys To Lichens Of North America, Revised And Expand- Ed. Irwin M. Brodo (Photographs By Sylvia Duran Sharnoff And Stephen Sharnoff; Drawings By Susan Laurie-Bourque)., Caleb A. Morse

The Prairie Naturalist

It would be hard to overestimate the importance of the 2001 publication of Lichens of North America (hereafter LNA) by Irwin Brodo, Silvia Duran Sharnoff, and Stephen Sharnoff (Brodo et al. 2001). Beautifully illustrated, LNA included both an excellent overview to lichenology—including such diverse topics as chemistry, ecology, ethnolichenology, and specimen preparation—and descriptions of more than 800 of the common and charismatic lichens of North Ameri- ca. It is the rare book that provides a good introduction to the discipline, while serving as an essential tool for lichenologists. LNA is frequently cited in journals as an authoritative source on spot …

Varmints And Victims: Predator Control In The Ameri- Can West. Frank Van Nuys., Phil Mastrangelo

The Prairie Naturalist

Having recently retired after 30+ years working in the field of human-wildlife conflicts, including predator conflicts with livestock, I looked forward to reading Varmints and Victims: Predator Control in the American West by Frank Van Nuys. As a wildlife biologist with an interest in the history of wildlife management in North America, I was further intrigued by the subject matter selected by Van Nuys.

In the book’s introduction, Van Nuys explains how the issue of mountain lion (Puma concolor) management in his home state of South Dakota sparked his interest in further exploring the history of predators and their management …

Bathymetric Survey For Lakes Azuei And Enriquillo, Hispaniola, Michael Piasecki, Mahrokh Moknatian, Fred Moshary, Joseph Cleto, Yolanda Leon, Jorge Gonzalez, Daniel Comarazamy

Publications and Research

The two largest lakes on the Caribbean Island of Hispaniola, Lake Azuei in Haiti and Lake Enriquillo in the Dominican Republic, have experienced dramatic growth and surface area expansion over the past few years leading to severe flooding and loss of arable land around the lake perimeters. In order to better understand the reasons for this unprecedented rate of expansion and the resulting consequences a multi-disciplinary team comprised of researchers from Haiti, the DR, and the US have embarked on an extensive data collecting and hydrologic and climatological modeling campaign. While the sensor deployment entails stations that measure climatological data …

Fixed Versus Random Sampling Designs In Small South Dakota Glacial Lakes, Bradley J. Smith, Nathan S. Kruger, Nicholas S. Voss, Brian G. Blackwell

The Prairie Naturalist

Choice of sampling design is fundamental when planning surveys to monitor fisheries resources. However, little is known about the impact that different sampling designs may have on commonly collected fish population metrics used to index relative abundance, size structure, and diversity in small (<200 ha) glacial lakes. To address this issue, we sampled three small glacial lakes in eastern South Dakota with modified fyke nets and gill nets at fixed sites used by South Dakota Game, Fish and Parks and a complement of nets at randomized sites. Catch per unit effort (CPUE), proportional size distribution (PSD), and PSD-preferred (PSD-P) were compared between fixed and random designs for each species and gear by lake while Bray-Curtis distances were calculated between sample designs for each gear type in each lake. Precision of CPUE estimates for routinely indexed species were calculated for both gears used by each sampling design. No consistent bias in calculated population metrics was detected between sampling designs for any species collected with either gear type in the three lakes. Sampling precision of CPUE estimates were low for both gears and study designs; though randomized sites tended to yield lower precision. Power analyses indicated that current levels of sampling effort are insufficient to detect differences in CPUE or PSD/PSD-P between fixed and random sampling designs. In addition to being small, study lakes had relatively homogenous habitat allowing for effective sampling resulting in similar values of CPUE and PSD/PSD-P for both fixed and random study designs, and high assemblage overlap. We conclude that fixed sampling sites provide adequate representation of fish communities in small glacial lakes and are sufficient for monitoring temporal changes in these small, but numerous, systems.

Distribution Of Short-Tailed Shrews (Mammalia: Soricidae: Blarina) In Missouri, Russell S. Pfau, Aaron P. Figueroa

The Prairie Naturalist

Three species of short-tailed shrews (genus Bla- rina) occur throughout the eastern one-half of the United States and southern Canada. B. brevicauda is the most widely distributed, ranging from the Atlantic ocean to the western Great Plains. B. carolinensis occurs throughout the southeastern U.S., and B. hylophaga is found in the southern plains states. The current understanding of the geographic distributions of these species is based primarily on morphol- ogy; size is the primary characteristic used for identifica- tion with B. brevicauda the largest and B. carolinensis the smallest.

The only states in which all three species have been reported …

Notes: Comparisons Of Catch Between Two Bait Types With An Emphasis On Pallid Stur- Geon, Thad W. Huenemann, Kirk D. Steffensen

The Prairie Naturalist

Trotline sampling has been a common practice used by commercial and recreational anglers to target specific fish species (e.g. Ictaluridae and Acipenseridae), while biologists have used them as a management tool to monitor and evaluate fish populations (Graham 1997, Vokoun and Rabeni 1999, Arterburn and Berry 2002, Steffensen et al. 2011). Different trotline configurations have been evaluated to determine which combination of hook type and bait produces higher catch rates for catfish species (Johnson 1987, Arterburn and Berry 2002) but this information is lacking for sturgeon species. For example, Arterburn and Berry (2002) concluded that channel catfish (Ictalurus punctatus) were …

Isotopes From Fecal Material Provides Evidence Of Recent Diet Of Prairie Deer Mice, John W. Doudna, Brent J. Danielson

The Prairie Naturalist

Prairie deer mice are important predators in many agricultural systems, and through their diet they can help to regulate pest insect and weed populations. Our objective was to test whether fecal material is an effective means of detailing the foraging ecology of small mammals. We conducted three studies to evaluate the efficacy of this technique: 1) field-collected fecal material from unknown deer mice from late winter to early spring, 2) fecal material collected in an enclosure with mice fed a mix of C3 and C4 plant seeds, and 3) fecal material from tagged female mice in the field. We detected …

The Effects Of Urbanization On Leaf Breakdown Rates In A Rock Island Watershed, Jillian M. Jespersen, Laura Becker, Kortney Hix, C. Kevin Geedey

Celebration of Learning

The ability of streams to break down leaves is widely used as an indicator of stream health. In this study, a series of six streams within the Rock Island, Ill., watershed, which were similar in discharge, order, temperature and pH, were categorized as healthy or unhealthy based on chloride levels. This study was part of a broader study of the Rock Island watershed by Augustana. Maple leaves were collected shortly after abscission, weighed, packaged in mesh bags (approximately 5g per bag) and deployed in the streams for two- and four-week periods. After each time period, the leaves were removed, dried …

Green Roofs And Urban Biodiversity: Their Role As Invertebrate Habitat And The Effect Of Design On Beetle Community, Sydney Marie Gonsalves

Dissertations and Theses

With over half the world's population now living in cities, urban areas represent one of earth's few ecosystems that are increasing in extent, and are sites of altered biogeochemical cycles, habitat fragmentation, and changes in biodiversity. However, urban green spaces, including green roofs, can also provide important pools of biodiversity and contribute to regional gamma diversity, while novel species assemblages can enhance some ecosystem services. Green roofs may also mitigate species loss in urban areas and have been shown to support a surprising diversity of invertebrates, including rare and endangered species. In the first part of this study I reviewed …

Neotype Designation For Scorpiops Pachmarhicus Bastawade, 1992 (Scorpiones: Euscorpiidae), With Redescription And Notes On The Species, Zeeshan A. Mirza, Gaurang Gowande

Euscorpius

Scorpiops pachmarhicus Bastawade, 1992 was described based on specimens collected from Pachmarhi, Madhya Pradesh. An expedition to the type locality led to discovery of a population at the type locality which permit us to designate a neotype for the species as types of the species are presently not traceable.

Dynamic Egg Color Mimicry, Daniel Hanley, Michael Sulc, Patricia L. R. Brennan, Mark E. Hauber, Tomas Grim, Marcel Honza

Publications and Research

Evolutionary hypotheses regarding the function of eggshell phenotypes, from solar protection through mimicry, have implicitly assumed that eggshell appearance remains static throughout the laying and incubation periods. However, recent research demonstrates that egg coloration changes over relatively short, biologically relevant timescales. Here, we provide the first evidence that such changes impact brood parasite–host eggshell color mimicry during the incubation stage. First, we use long-term data to establish how rapidly the Acrocephalus arundinaceus Linnaeus (great reed warbler) responded to natural parasitic eggs laid by the Cuculus canorus Linnaeus (common cuckoo). Most hosts rejected parasitic eggs just prior to clutch completion, but …

Comparative Genomics Explains The Evolutionary Success Of Reef-Forming Corals, Debashish Bhattacharya, Shobhit Agrawal, Manuel Aranda, Sebastian Baumgarten, Mahdi Belcaid, Jeana L. Drake, Douglas Erwin, Sylvian Foret, Ruth D. Gates, David F. Gruber, Bishoy Kamel, Michael P. Lesser, Oren Levy, Yi Jin Liew, Matthew Macmanes, Tali Mass, Monica Medina, Shaadi Mehr, Eli Meyer, Dana C. Price, Hollie M. Putnam, Huan Qiu, Chuya Shinzato, Eiichi Shoguchi, Alexander J. Stokes, Sylvie Tambutté, Dan Tchernov, Christian R. Voolstra, Nicole Wagner, Charles W. Walker, Andreas Pm Weber, Virginia Weis, Ehud Zelzion, Didier Zoccola, Paul G. Falkowski

Publications and Research

Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals …

Quantitative Evidence For The Effects Of Multiple Drivers On Continental-Scale Amphibian Declines, Evan H. Campbell Grant, David A. W. Miller, Benedikt R. Schmidt, Michael J. Adams, Staci M. Amburgey, Thierry Chambert, Sam S. Cruickshank, Robert N. Fisher, David M. Green, Blake R. Hossack, Pieter T. J. Johnson, Maxwell B. Joseph, Tracy A. G. Rittenhouse, Maureen E. Ryan, J. Hardin Waddle, Susan C. Walls, Larissa L. Bailey, Gary M. Fellers, Thomas A. Gorman, Andrew M. Ray, David S. Pilliod, Steven J. Price, Daniel Saenz, Walt Sadinski, Erin Muths

Forestry and Natural Resources Faculty Publications

Since amphibian declines were first proposed as a global phenomenon over a quarter century ago, the conservation community has made little progress in halting or reversing these trends. The early search for a “smoking gun” was replaced with the expectation that declines are caused by multiple drivers. While field observations and experiments have identified factors leading to increased local extinction risk, evidence for effects of these drivers is lacking at large spatial scales. Here, we use observations of 389 time-series of 83 species and complexes from 61 study areas across North America to test the effects of 4 of the …

Anticipating Elimination Of Mosquito-Borne Diseases, Suzanne M. O'Regan, Jonathan Lillie, John M. Drake

Biology and Medicine Through Mathematics Conference

No abstract provided.

The Influence Of Temperature Variation On Dengue Fever: A Model-Based Investigation, Michael A. Robert, Paula D. Weber, Rebecca C. Christofferson, Christopher N. Mores, Helen J. Wearing

Biology and Medicine Through Mathematics Conference

No abstract provided.

Dynamics Of Two Pathogens In A Single Tick Population, Alexis White

Biology and Medicine Through Mathematics Conference

No abstract provided.

Growth Dynamics For Pomacea Maculata, Lihong Zhao, Karyn L. Sutton, Jacoby Carter

Biology and Medicine Through Mathematics Conference

No abstract provided.

Spatial Patterning In The York River Tidal Marshes Through The Interaction Of Cordgrass, Mussels And Sediment, Sofya Zaytseva, Leah Shaw, Rom Lipcius, Junping Shi

Biology and Medicine Through Mathematics Conference

No abstract provided.

Movement And Dynamics Of Norway Rats In An Urban Landscape, Rosalyn Rael, Caz Taylor

Biology and Medicine Through Mathematics Conference

No abstract provided.

Impacts To Anadromous Fish Through Groundwater Extraction, Aaron Hebert

Master's Projects and Capstones

California uses more groundwater than any other state in the United States in order to meet agricultural demand during the growing season when water is naturally least available due to the state’s Mediterranean climate. The state also hosts populations of anadromous fish that are otherwise found exclusively in the wetter Pacific northwest. Groundwater has historically helped maintain baseflow in the summer and fall low-flow periods and acted as a natural buffer against the regular droughts that occur in California. Today, groundwater provides 30-40% of the state’s water supply, but the pumping in many cases has reduced groundwater discharge and baseflow, …

Phylogenetic Analysis Of Human Cytomegalovirus Pus27 And Pus28: Ascertaining An Independent Or Linked Evolutionary History, Jessica A. Scarborough

Undergraduate Honors Theses

Human cytomegalovirus (HCMV) is a widespread pathogen that is particularly skilled at evading immune detection and defense mechanisms, largely due to extensive co-evolution with its host’s immune system. One aspect of this co-evolution involves the acquisition of four virally encoded GPCR chemokine receptor homologs, products of the US27, US28, UL33 and UL78 genes. G protein-coupled receptors (GPCR) are the largest family of cell surface proteins, found in organisms from yeast to humans. In this research, phylogenetic analysis was used to investigate the origins of the US27 and US28 genes, which are adjacent in the viral genome. The results indicate that …

The Mexican Water Forest: Benefits Of Using Remote Sensing Techniques To Assess Changes In Land Use And Land Cover, Maria F. Lopez Ornelas

Master's Projects and Capstones

In the past 30 years, anthropogenic activities like urbanization, agriculture, road fragmentation and deforestation have resulted in changes in the land use and land cover (LULC) in the Mexican Water Forest. Due to the important ecosystem services, and the natural resources this forest provides, in Mexico, it has become increasingly necessary to use new technologies and tools to support the planning, implementation and integration of forest management and conservation plans, as well as ecological and socioeconomic analysis of this ecosystem. Remote Sensing techniques and Geographic Information Systems (GIS) have been a true technological and methodological revolution in the acquisition, management …

Preserving Biodiversity For A Climate Change Future: A Resilience Assessment Of Three Bay Area Species--Adenostoma Fasciculatum (Chamise), Arctostaphylos Canescens (Hoary Manzanita), And Arctostaphylos Virgata (Marin Manzanita), Alison S. Pollack

Master's Projects and Capstones

Anthropogenic climate change is an undeniable threat to the future of the natural world and human civilization. These shifts will have profound impacts on vegetation, especially for species endemic to isolated regions or sensitive to climate change factors. However, species resilience can predict success into the next century. Resilience is defined as the ability to withstand climate change factors, whereas vulnerability is defined as susceptibility to climate induced stress or damage.

Chaparral and coastal scrub ecosystems within the Bay Area of California provide a unique context for examining resilience, as many species are adapted to high temperatures, drought, and wildfire—all …

Rescuing Perishable Neuroanatomical Information From A Threatened Biodiversity Hotspot: Remote Field Methods For Brain Tissue Preservation Validated By Cytoarchitectonic Analysis, Immunohistochemistry, And X-Ray Microcomputed Tomography, Daniel Hughes, Ellen Walker, Paul Gignac, Anais Martinez, Kenichiro Negishi, Carl Lieb, Eli Greenbaum, Arshad Khan

Selected Works Temporary Series

Biodiversity hotspots, which harbor more endemic species than elsewhere on Earth, areincreasingly threatened. There is a need to accelerate collection efforts in these regionsbefore threatened or endangered species become extinct. The diverse geographical, ecological,genetic, morphological, and behavioral data generated from the on-site collection ofan individual specimen are useful for many scientific purposes. However, traditional methodsfor specimen preparation in the field do not permit researchers to retrieve neuroanatomicaldata, disregarding potentially useful data for increasing our understanding of braindiversity. These data have helped clarify brain evolution, deciphered relationships betweenstructure and function, and revealed constraints and selective pressures that provide contextabout the evolution …