Ecology and Evolutionary Biology Commons^™

Human Paternal Lineages, Languages And Environment In The Caucasus, David Tarkhnishvili, Alexander Gavashelishvili, Marine Murtskhvaladze, Mariam Gabelaia, Gigi Tevzadze

Human Biology Open Access Pre-Prints

Publications that describe the human Y-DNA haplogroup composition in different ethnic or linguistic groups and geographic regions provide no explicit explanation of the distribution of human paternal lineages in relation to specific ecological conditions. Our research attempts to address this topic for the Caucasus – a geographic region that encompasses a relatively small area but harbors high linguistic, ethnic, and Y-DNA haplogroup diversity. 224 men that identified themselves as ethnic Georgian were genotyped for Y-chromosome 23 STR markers and assigned to their geographic places of origin. The genotyped data were supplemented with the published data on the haplogroup composition and …

Coral-Fish Dynamics And Interactions: A Case Study Of Grand Cayman, Eileen Shea Davis

Lawrence University Honors Projects

To better understand the ecological interactions of coral reefs, it is important to understand the mechanisms that control the distribution and abundance of reef-building corals as well as the mechanisms that control the diversity and abundance of the fish community that inhabits these reef habitats. The purpose of this study was to identify specific coral-fish interactions among the reefs of Grand Cayman in order to gain insight into the biological effects of fish on the assemblage of hard corals. Using data collected by the Lawrence University Marine Program (LUMP), a number of exploratory statistical analyses were run in order to …

Evidence Of Climate-Induced Range Contractions In Bull Trout Salvelinus Confluentus In A Rocky Mountain Watersehd, U.S.A., Lisa A. Eby, Olga E. Helmy, Lisa M. Holsinger, Michael K. Young

Wildlife Biology Faculty Publications

Many freshwater fish species are considered vulnerable to stream temperature warming associated with climate change because they are ectothermic, yet there are surprisingly few studies documenting changes in distributions. Streams and rivers in the U.S. Rocky Mountains have been warming for several decades. At the same time these systems have been experiencing an increase in the severity and frequency of wildfires, which often results in habitat changes including increased water temperatures. We resampled 74 sites across a Rocky Mountain watershed 17 to 20 years after initial samples to determine whether there were trends in bull trout occurrence associated with temperature, …

Phylogeography Of E1b1b1b-M81 Haplogroup And Analysis Of Its Subclades In Morocco, Ahmed Reguig, Nourdin Harich, Abdelhamid Barakat, Hassan Rouba

Human Biology Open Access Pre-Prints

In this work, we have analyzed a total of 295 unrelated Berber-speaking men from the northern, center and southern of Morocco, in order to characterize frequency of E1b1b1b-M81 haplogroup and to refine the phylogeny of its subclades: E1b1b1b1-M107, E1b1b1b2-M183 and E1b1b1b2a-M165. For this purpose, we have typed four biallelic polymorphisms: M81, M107, M183 and M165. As results, a large majority of the Berber-speaking male lineages belong to the Y chromosomal E1b1b1b-M81 haplogroup. The frequency ranged from 79.1 to 98.5% in all localities sampled. Then, the E1b1b1b2-M183 was the most dominant subclade in our samples, which ranged from 65.1% to 83.1%. …

Variation In Habitat Thresholds: An Analysis Of Minimum Habitat Requirements Of North American Breeding Birds, Yntze Van Der Hoek

Dissertations, Theses, and Capstone Projects

Many species show dramatic changes in population extinction or persistence probability at particular habitat amounts. These `extinction thresholds' could be translated to conservation targets, under the condition that we can derive generalities. I investigated the level of variation in landscape-level habitat thresholds for a suite of North American, forest-associated, breeding birds. Records from Breeding Bird Atlases and the availability of remotely-sensed land cover data allowed me to compare habitat thresholds for 25 species across the states of Massachusetts, Michigan, New York, Ohio, Pennsylvania, and Vermont. I show that variation in thresholds is considerable (Chapter II, III), as thresholds range from …

The Effect Of Population History On Hominoid Intraspecific Cranial Shape Diversity: Combining Population Genetic And 3d Geometric Morphometric Data, Julia Marie Zichello

Dissertations, Theses, and Capstone Projects

Cranial shape diversity within hominoids has been previously studied with the aim of understanding how levels of diversity in extant species compare with extinct hominin specimens. This dissertation addresses the question of why cranial shape diversity differs among extant hominoids. Levels of intraspecific cranial shape diversity are highly varied among hominoids. For example, Sumatran orangutan cranial shape diversity is more than twice that of all living humans. Here, the population history of each species, or sub-species, is considered as a force potentially structuring phenotypic variation. It is already well established that population history has shaped patterns of modern human cranial …

Mitochondrial Dna Variability Among Six South-American Amerindian Villages From The Pano Linguistic Group, Celso T. Mendes-Junior, Aguinaldo L. Simoes

Human Biology Open Access Pre-Prints

Although scattered throughout a large geographic area, the members of the Pano linguistic group present strong ethnic, linguistic and cultural homogeneity, a feature that causes them to be considered as components of a same “Pano” tribe. Nevertheless, the genetic homogeneity between Pano villages has not been examined before. To study the genetic structure of the Pano linguistic group, four major Native American mitochondrial DNA (mtDNA) founder haplogroups were analyzed in 77 Amerindians from six villages of four Pano tribes (Katukina, Kaxináwa, Marúbo, and Yaminawa) located in the Brazilian Amazon. The central position of these tribes in the continent makes them …

Investigating Meter Scale Topographic Variation As A Factor Of Monterey Pine (Pinus Radiata) Growing Conditions At Kenneth Norris Rancho Marino Reserve, Cambria, Ca, William J. Meyst

Natural Resources Management and Environmental Sciences

Endemic Monterey pine (Pinus radiata) is limited to three locations in California due to its unique ecological requirements. This project was conducted to investigate spatial growth patterns ofMonterey pine over complex ground surfaces. The coastal hills of Rancho Marino Reserve, Cambria, were surveyed using four 150-m transects to quantify and record ground surface features and growing conditions ofMonterey pine. Changes in elevation of each transect were measured using an Abney level. Linear ground surfaces were found at 86% (344 of 400) of survey nodes. Convex ground surfaces were found at 10.5% of survey nodes (42 of 400). Of …

Cryptic Diversity And Conservation Of Gopher Frogs Across The Southeastern United States, Stephen C. Richter, Eric M. O’Neill, Schyler O. Nunziata, Andrew Rumments, Emily S. Gustin, Jeanne E. Young, Brian I. Crother

Biological Sciences Faculty and Staff Research

Identifying cryptic biodiversity is fundamental to evolutionary biology and to conservation efforts. This study investigated range-wide genetic diversity of Gopher Frogs, Lithobates capito, across the southeastern United States coastal plain to determine implications for taxonomy and conservation. We collected data for two mtDNA regions in 21 populations to identify genetic structure across the geographic distribution of the species. Based on population genetic, phylogenetic, and genealogical analyses, we recovered three reciprocally monophyletic mtDNA lineages corresponding to mainland coastal plain populations and two lineages within peninsular Florida. Breakpoints for these lineages did not occur in previously identified hotspots of amphibian phylogeographic breaks …

Pparγ Negatively Regulates T Cell Activation To Prevent Follicular Helper T Cells And Germinal Center Formation, Hong-Jai Park, Do-Hyun Kim, Jin-Young Choi, Won-Ju Kim, Ji Yun Kim, Ali Senejani, Soo Seok Hwang, Lark Kyun Kim, Zuzana Tobiasova, Gap Ryol Lee, Joseph Craft, Alfred L.M. Bothwell, Je-Min Choi

Biology and Environmental Science Faculty Publications

Peroxisome proliferator-activated receptor gamma (PPARγ) is a transcription factor that regulates lipid and glucose metabolism. Although studies of PPARγ ligands have demonstrated its regulatory functions in inflammation and adaptive immunity, its intrinsic role in T cells and autoimmunity has yet to be fully elucidated. Here we used CD4- PPARγ KO mice to investigate PPARγ -deficient T cells, which were hyper-reactive to produce higher levels of cytokines and exhibited greater proliferation than wild type T cells with increased ERK and AKT phosphorylation. Diminished expression of IκΒα, Sirt1, and Foxo1, which are inhibitors of NF-κΒ, was observed in PPARγ-deficient T cells that …

Divergent Transcriptional Responses To Low Temperature Among Populations Of Alpine And Lowland Species Of New Zealand Stick Insects (Micrarchus)., Luke T Dunning, Alice B Dennis, Brent J Sinclair, Richard D Newcomb, Thomas R Buckley

Biology Publications

In widespread and genetically structured populations, temperature variation may lead to among-population differentiation of thermal biology. The New Zealand stick insect genus Micrarchus contains four species that inhabit different thermal environments, two of which are geographically widespread. RNA-Seq and quantitative PCR were used to investigate the transcriptional responses to cold shock among lowland and alpine species to identify cold-responsive transcripts that differ between the species and to determine whether there is intraspecific geographical variation in gene expression. We also used mitochondrial DNA, nuclear 28S ribosomal DNA and transcriptome-wide SNPs to determine phylogeographic structure and the potential for differences in genetic …

Obligate Male Death And Sexual Cannibalism In Dark Fishing Spiders, Steven Schwartz, William E. Wagner, Eileen A. Hebets

Eileen Hebets Publications

Male dark fishing spiders (Dolomedes tenebrosus Araneae, Pisauridae) always die during their first and only copulation, making all males monogynous. Such obligate male death can be adaptive if it facilitates sexual cannibalism, and if sexual cannibalism results in male reproductive benefits, such as an advantage in sperm competition through reduced female remating. We first conducted an experiment to determine the extent to which D. tenebrosus (1) males are cannibalized by females and (2) females engage in remating, both of which are prerequisites for several adaptive hypotheses of male self-sacrifice. We then conducted an experiment to test the hypothesis that …

Early Song Discrimination By Nestling Sparrows In The Wild, Daizaburo Shizuka

School of Biological Sciences: Faculty Publications

Songs play an important role in premating isolation in birds. However, when songs are learned, expe- rience with both conspecific and heterospecific songs in early life could lead to the development of both mixed songs and mixed preferences. One way that such learning errors can be prevented is if birds can discriminate between songs of different species prior to learning and preferentially memorize conspe- cific songs. Prior captive studies have shown that white-crowned sparrows, Zonotrichia leucophrys, are able to discriminate songs early in the process of song memorization, after about 10 days since hatching. I studied early song discrimination in …

Sauger Life History In The Lower Portion Of The Upper Mississippi River, Kasey L. Yallaly, Justin R. Seibert, Sara J. Tripp, David P. Herzog, Quinton E. Phelps

The Prairie Naturalist

Widespread declines have been observed in numerous riverine fish species due to a host of anthropogenic related perturbations such as channelization, dam creation, and exploitation (Graham 1997, Gerken and Paukert 2009). Understanding life history and population demographics of riverine fishes is critical to their conservation. Specific to our study, the Mississippi River has undergone extensive habitat modifications that have changed the Upper Mississippi River (UMR) from a typical lotic large, free flowing river to multiple reservoir-like pools with reduced flow (LePage 1980, Hurley et al. 1987). These habitat transformations may impact sauger (Sander canadensis) populations within the Mississippi River. Several …

Den Characteristics Of Upland And Low- Land Striped Skunks Along The Missouri River Floodplain, Dave Sempek, James A. Wilson

The Prairie Naturalist

Striped skunks (Mephitis mephitis) are opportunistic with respect to habitat use (Bixler and Gittleman 2000), inhabiting an array of landscapes in the proximity of a permanent water supply, such as forest borders, old-fields, fencerows, and open grassy fields broken by wooded ravines (Schwartz and Schwartz 1981, Larivière and Messier 2000). Food quantity and accessibility are major factors determining the quality of striped skunk habitat (Larivière et al. 1999) and are important in the den site selection.

Dens play an important role in skunk survival and reproduction due to the warmth, predator protection, and safe location for parturition they provide (Hwang …

Precipitation And Fire Impacts On Small Mammals In Shortgrass Prairie, Whitney J. Priesmeyer, Raymond S. Matlack, Richard T. Kazmair

The Prairie Naturalist

The southern Great Plains and the northern part of the Texas Panhandle have received less attention from a biological perspective than other parts of the state. Although there is substantial information on the effects of fire on small mammals in the tallgrass and mixed-grass prairies, there is a lack of understanding of fire influences in the shortgrass prairie, specifically on small mammals. We conducted our study on the Cross Bar Cooperative Management Area (CMA), a 4,856 ha shortgrass prairie within the Texas panhandle. Our objective was to determine the effect of three different fire return frequencies and precipitation on diversity …

Bobcat Predation On Bighorn Lamb In The Western Black Hills Of South Dakota, Brynn L. Parr, John Kanta, Joe Sandrini, Daniel J. Thompson, Jonathan A. Jenks

The Prairie Naturalist

Bighorn sheep (Ovis canadensis) are found throughout western North America (Krausman et al. 1993, Goodson 1994, Krausman et al. 1996, Besser et al. 2012). In their current range, commonly documented large predators of bighorn sheep include cougars (Puma concolor), gray foxes (Urocyon cinereoargenteus), wolves (Canis lupus), and coyotes (C. latrans; Ross et al. 1997, Neale et al. 1998, Corti and Shackleton 2002, Dekker 2009, Karsch et al. 2013). Bald eagles (Haliaeetus leucocephalus) and golden eagles (Aquila chrysaetos) also have been documented as predators to both wild and domestic sheep (Kennedy 1948, Cunningham 1970, Nette et al. 1984, Watte and Phillips …

The Role Of Reviewer Criticism And How To Keep It In Perspective, Christopher N. Jacques

The Prairie Naturalist

Greetings GPNSS members! Hopefully this editorial finds you well and gearing up for the summer field season. As I write this editorial, I find myself reflecting on my time as Editor-in-Chief of TPN over the past 5 years. The experience has been personally and professionally rewarding in many ways, and I want to spend some time discussing something that I have experienced not only as a fellow author and Associate Editor, but also as a journal Editor.

Reviewer criticism. Thinking back to when I was appointed Editor, how I viewed criticism then is very different than how I think about …

The Gamekeepers: Wisconsin Wildlife Conservation From Wcd To Cwd. David L. Gjeston., Carrol L. Henderson

The Prairie Naturalist

Author David L. Gjeston has done a masterful job of capturing the history of wildlife conservation and, in particular, the work of the Wisconsin Department of Natural Resources (formerly the Wisconsin Conservation Department or WCD) in protecting, restoring, and managing the wildlife resources of Wisconsin. Gjeston took on an incredibly complex task. He tells a fascinating story of wildlife conservation comprised of many layers of wildlife management from over a century and a half of evolving perceptions regarding wildlife uses, exploitation, restoration, problems, conflicts, and recreational opportunities that continue to the present.

Perhaps the most appealing part of this book …

Monarch Butterfly (Danaus Plexippus) Tree Preference And Intersite Movement At California Overwintering Sites, Jessica Lynn Griffiths

Master's Theses

Managing Monarch butterfly overwintering groves: making room among the eucalyptus

Proper management and conservation of the coastal California overwintering sites used by western Monarch butterflies (Danaus plexippus L.) is critical for continued use of these sites by monarchs. Many management efforts are currently concentrating on eucalyptus-only sites because of the prevailing notion that monarchs prefer eucalyptus over native tree species. Yet, whether a preference exists or not has never been tested. Herein, we test the “eucalyptus preference” hypothesis with data from five overwintering sites comprised of blue gum eucalyptus (Eucalyptus globulus) and at least one other native tree …

The Neotropical Genus Austrolebias: An Emerging Model Of Annual Killifishes, Nibia Berois, María J. Arezo, Rafael O. De Sá

Biology Faculty Publications

Annual fishes are found in both Africa and South America occupying ephemeral ponds that dried seasonally. Neotropical annual fishes are members of the family Rivulidae that consist of both annual and non-annual fishes. Annual species are characterized by a prolonged embryonic development and a relatively short adult life.

Males and females show striking sexual dimorphisms, complex courtship, and mating behaviors. The prolonged embryonic stage has several traits including embryos that are resistant to desiccation and undergo up to three reversible developmental arrests until hatching. These unique developmental adaptations are closely related to the annual fish life cycle and are the …

Western Massasauga (Sistrurus Tergeminus): Species Conservation Assessment, Melissa J. Panella, Brent D. Johnson

Nebraska Game and Parks Commission: Publications

The primary goal in development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Western Massasauga (Sistrurus tergeminus) as a Tier I at-risk species. Provided are some general management recommendations regarding Western Massasaugas. Conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk species that will aid in the decision-making process or …

Questioning The “Melting Pot”: Analysis Of Alu Inserts In Three Population Samples From Uruguay, Pedro C. Hidalgo, Patricia Mut, Elizabeth Ackermann, Gonzalo Figueiro, Monica Sans

Human Biology Open Access Pre-Prints

The way that immigrants integrate to recipient societies has been discussed for decades, mainly from the perspective of the social sciences. Uruguay, as other American countries, received different waves of European immigrants, although the details of the process of assimilation, when occurred, are unclear. In this paper, we use genetic markers to understand the process experienced by the Basques, one of the major migration waves that populated Uruguay, and its relation to other immigrants as well as to Native American and African descendants. For this purpose, we analyze the allele frequencies of ten ALU loci (A25, ACE, APOA1, B65, F13B, …

Privatization And Property In Biology, Joan E. Strassmann, David C. Queller

Biology Faculty Research

Organisms evolve to control, preserve, protect and invest in their own bodies. When they do likewise with external resources they privatize those resources and convert them into their own property. Property is a neglected topic in biology, although examples include territories, domiciles and nest structures, food caching, mate guarding, and the resources and partners in mutualisms. Property is important because it represents a solution to the tragedy of the commons; to the extent that an individual exerts long-term control of its property, it can use it prudently, and even invest in it. Resources most worth privatizing are often high in …

The Evolution Of Respiratory O2/No Reductases: An Out-Of-The-Phylogenetic-Box Perspective, Anne-Lise Ducluzeau, Barbara Schoepp-Cothenet, Robert Van Lis, Frauke Baymann, Michael J. Russell, Wilfgang Nitschke

Department of Biochemistry: Faculty Publications

Complex life on our planet crucially depends on strong redox disequilibria afforded by the almost ubiquitous presence of highly oxidizing molecular oxygen. However, the history of O₂-levels in the atmosphere is complex and prior to the Great Oxidation Event some 2.3 billion years ago, the amount of O₂ in the biosphere is considered to have been extremely low as compared with present-day values. Therefore the evolutionary histories of life and of O₂-levels are likely intricately intertwined. The obvious biological proxy for inferring the impact of changing O₂-levels on life is the evolutionary history …

Photosynthetic Thermal Tolerance And Recovery To Short Duration Temperature Stress In Desert And Montane Plants: A Comparative Study, David William Gallagher

Master's Theses

• Climate change models predict an increase in frequency and amplitude of extreme weather events, including heat waves. To better predict how the composition and distribution of plant assemblages might respond to these changes in temperature, it is important to understand how species currently respond to these extremes. Photosynthetic thermal tolerance (T₂₅)and photosynthetic recovery (RT₂₅) were quantified in 27 species. We also studied the relationships between T₂₅, RT₂₅ and leaf mass per area (LMA). Leaf temperature was also monitored in the field.
• Leaves used in this study were collected from two distinct …

Insect Visitation Of Peduncular And Petiolar Extrafloral Nectar Glands On Castor Bean (Ricinus Communis L.) Plants In Southern California, Victor D. Carmona-Galindo, Taylor Waters, David Chirikian

Biology Faculty Works

Castor bean (Ricinus communis L.) is a myrmecophytic plant species with specialized extrafloral nectar (EFN) glands that serve to attract predatory insects, which in return defend plant-tissues against herbivores. The EFN glands on castor bean plants are located along the leaf petioles as well as on the peduncles of its imperfect (unisexual) flowers. This field-project evaluates the richness, diversity, and species assemblage of insects visiting EFN glands located on (female and male) flower peduncles and leaf petioles on castor bean plants growing in a Southern California coastal landscape. We detected that EFN glands on female-flower peduncles were visited by …

Quantifying Differences In Habitat Use Between Anglers And Large Bluegills, Eric J. Weimer, Michael L. Brown, Brian G. Blackwell

The Prairie Naturalist

We compared the habitat use of large (>200 mm) bluegills (Lepomis macrochirus) to the locations of anglers targeting bluegills in a South Dakota glacial lake to determine whether habitat use was similar between anglers and bluegills. Eighty- five bluegills (mean total length = 213 mm) collected in September 2002 and May 2003 were affixed with external radio transmitters and subsequently relocated three to four times per week from October 2002 through October 2003. Bluegill angler locations were recorded during bluegill tracking sessions and roving creel surveys. Habitat variables (water depth, vegetation density and height, and substrate type) were measured …

Mammals Of North Dakota. First Edition. Robert Seabloom., Erin H. Gillam

The Prairie Naturalist

As a mammalogist living in the Great Plains, I was excited to hear about the publication of The Mammals of North Dakota by Robert Seabloom. No such field guide has been compiled since the late 1920s, leaving nature lovers and researchers alike without a modern source of information about the mammals of the state. Despite my enthusiasm, I will admit that I was originally expecting a standard (i.e., boring) field guide with dry facts about the taxonomic groups of interest. Much to my surprise, this book was not a mere list of relevant information, but an engaging work providing extensive …

Diurnal Raptors Of Buffalo County, Nebraska, Thomas L. Freeman

The Prairie Naturalist

Diurnal birds of prey are apex predators, which often are utilized as indicators of potential environmental change (Newton 1979, Rodriguez-Estrella et al. 1998). While the Platte River Valley of Nebraska and the central plains are recognized as important winter habitat for numer- ous bird of prey species (United States Fish and Wildlife Service [USFWS] 1981, Root 1988), there are few published studies describing the distribution and abundance of raptors in Nebraska (Mathisen and Mathisen 1968, Craighead and Craighead 1969, USFWS 1981). In addition, studies summarizing the long-term distribution or density of Falconi- formes in Nebraska are limited due to the …