Ecology and Evolutionary Biology Commons^™

Management Of Root Knot Nematode (Meloidogyne Incognita ) In Indiana Soybeans, David Edgardo Perla Martinez

Open Access Theses

The aim of this project was to evaluate different strategies for management of Root Knot Nematode (RKN) on soybean and tomato in Indiana. Seed treatments were evaluated under field and greenhouse conditions, but no effect on RKN populations was observed. Soybean lines evaluated for resistance to RKN under greenhouse conditions showed that six lines may be resistant to RKN. Four different commercial mustard cover crops were evaluated for their bio-fumigant impact on RKN populations in the production of tomato. Euruca sativa, Cv. Nemat was a poor host of RKN. A positive impact on the vigor of the tomato plants followed …

Refining Phylogenetic Hypotheses Using Chloroplast Genomics And Incomplete Data Sets In Lasthenia (Madieae, Asteraceae), Joseph Frederic Walker

Open Access Theses

The genus Lasthenia (Madieae, Asteraceae), consists of predominantly annual plant species that are largely endemic to the California Floristic Province of western North America and occupy a large range of habitat types. With high levels of morphological and ecological diversity, Lasthenia is a robust tool, capable of providing a natural non-model organism for answering a diverse array of ecological and evolutionary questions. Future studies would benefit greatly from a strong phylogenetic hypothesis and more molecular resources, such as the whole plastome sequence for a representative species in the genus. Over a decade ago there was a study that laid a …

Diet Alters Delayed Selfing, Inbreeding Depression, And Reproductive Senescence In A Freshwater Snail, Josh R. Auld, John F. Henkel

Biology Faculty Publications

No abstract provided.

Gelatinous Zooplankton Biomass In The Global Oceans: Geographic Variation And Environmental Drivers, Cathy H. Lucas, Daniel O.B. Jones, Catherine J. Hollyhead, Robert H. Condon, Carlos M. Duarte, William M. Graham, Kelly L. Robinson, Kylie A. Pitt, Mark Schildhauer, Jim Regetz

Faculty Publications

Aim

Scientific debate regarding the future trends, and subsequent ecological, biogeochemical and societal impacts, of gelatinous zooplankton (GZ) in a changing ocean is hampered by lack of a global baseline and an understanding of the causes of biogeographic patterns. We address this by using a new global database of GZ records to test hypotheses relating to environmental drivers of biogeographic variation in the multidecadal baseline of epipelagic GZ biomass in the world's oceans.

Location

Global oceans.

Methods

Over 476,000 global GZ data and metadata items were assembled from a variety of published and unpublished sources. From this, a total of …

Phylogeny And Biogeography Of The Family Haemulidae Based On A Multigene Approach, Millicent D. Sanciangco

Biological Sciences Theses & Dissertations

Haemulids are one of the most ecologically and commercially important groups of near-shore fishes. They are very diverse, with 145 putative species belonging to 18 genera. The phylogenetic relationships of the genera within the haemulids, however, are uncertain and the limits and relationships with other percomorphs are undefined.

Here, I present the first comprehensive phylogenetic hypothesis for the family based on a combined dataset of five genes (4731 bp; 16 genera, 56 species). Results show strong support for a monophyletic Haemulidae with the inclusion of the former inermiids. However, results of the analyses call into question the monophyly of a …

Habitat Effects On Chick-A-Dee Call Complexity, Jacqueline Renee Lynch

Open Access Theses

Past studies on the communication systems of species in urban environments (such as Common Starlings (Sturnus vulgaris), nightingales (Luscinia megarhynchos Brehm), brown-headed cowbirds ( Molothrus ater), Southern brown tree frogs (Litoria ewingii )) have shown multiple ways that species change vocal signaling behavior to adjust to urban habitats (e.g. alarm calls and singing). This study further investigates the changes in signaling in relation to the chick-a-dee call of the Carolina chickadee (Poecile carolinensis). A secondary goal of this study was to compare both the amount of information and rate of calling across …

Across-Year Social Stability Shapes Network Structure In Wintering Migrant Sparrows, Daizaburo Shizuka, Alexis S. Chaine, Jennifer Anderson, Oscar Johnson, Inger Marie Laursen, Bruce E. Lyon

School of Biological Sciences: Faculty Publications

Migratory birds often form flocks on their wintering grounds, but important details of social structure such as the patterns of association between individuals are virtually unknown. We analysed networks of co-membership in short-term flocks for wintering golden-crowned sparrows (Zonotrichia atricapilla) across three years and discovered social complexity unsuspected for migratory songbirds. The population was consistently clustered into distinct social communities within a relatively small area (~ 7 ha). Birds returned to the same community across years, with mortality and recruitment leading to some degree of turnover in membership. These spatiotemporal patterns were explained by the combination of space …

Use Of Macroinvertebrates In Bioassessment Of Land Use And Water Quality In Northern Mongolia, Oyunchuluun Yadamsuren

All Dissertations

Land-use practices in Mongolia lead to habitat degradation and consequently affect the structure and function of biological communities. There is no accepted bioassessment technique for determining the ecological consequences of habitat degradation on biological communities and water quality in Mongolia, such that a monitoring and management program suitable for Mongolia is sorely needed. Both a trait-based approach and the North American Rapid Bioassessment Protocol (RBP) metrics were tested with macroinvertebrates to determine the performance and applicability of these approaches for predicting general ecological responses of freshwater and terrestrial communities to habitat variation due to overgrazing and mining in northern Mongolian …

Report On The Workshop For Life Detection In Samples From Mars, Gerhard Kminek, Catherine Conley, Carlton C. Allen, Douglas H. Bartlett, David W. Beaty, Liane G. Benning, Rohit Bhatia, Penelope J. Boston, Caroline Duchaine, Jack D. Farmer, George J. Flynn, Daniel P. Glavin, Yuri Gorby, John E. Hallsworth, Rakesh Mogul, Duane Moser, P. Buford Price, Ruediger Pukall, David Fernandez-Remolar, Caroline L. Smith, Kenneth M. Stedman, Andrew Steele, Ramunas Stepanauskas, Henry Sun, Jorge L. Vago, Mary A. Voytek, Paul S. Weiss, Frances Westfall

Biology Faculty Publications and Presentations

The question of whether there is or was life on Mars has been one of the most pivotal since Schiaparellis’ telescopic observations of the red planet. With the advent of the space age, this question can be addressed directly by exploring the surface of Mars and by bringing samples to Earth for analysis. The latter, however, is not free of problems. Life can be found virtually everywhere on Earth. Hence the potential for contaminating the Mars samples and compromising their scientific integrity is not negligible. Conversely, if life is present in samples from Mars, this may represent a potential source …

A Comprehensive Evaluation Of C25 Highly Branched Isoprenoid Alkenes Of Marine Diatoms As Proxies For Sea Ice Extent In The Arctic Ocean, Tetiana Muniak

OES Theses and Dissertations

Sea Ice extent is one of the major factors regulating carbon cycling and ecosystem function in the modern Arctic Ocean. It is an essential component of climate models and is crucial for the evaluation of various oceanographic processes that influence a particular region. Yet it is also one of the most difficult attributes of the ocean with respect to our ability for its accurate reconstruction from paleo records. The lack of the detailed records prior to satellite information has encouraged the development of new proxy records for the reconstruction of past

sea ice conditions. In recent years, a new monounsaturated …

The Ecological Impact Of Casitas On Caribbean Spiny Lobster (Panulirus Argus) Populations In The Florida Keys, Fl, (Usa), Benjamin C. Gutzler

Biological Sciences Theses & Dissertations

Casitas are artificial structures placed on the seabed by fishermen to aggregate Caribbean spiny lobsters (Panulirus argus) for ease of capture. Some researchers suggest that they may also enhance lobster populations in shelter-limited environments. Conversely, aggregation of lobsters within casitas may be detrimental to the population if the nutritional condition or mortality of lobsters is poorer in casitas than in natural shelters. Small juvenile lobsters may be at particular risk because their foraging range is smaller and they are more readily preyed upon than larger lobsters. If so, then casitas placed in lobster nurseries may function as "ecological traps"; wherein …

Spatial And Temporal Variability In Net Community Metabolism In The Middle Atlantic Bight, Georges Bank, And Gulf Of Maine: Observations Of Net Heterotrophic Phases In The Highly Productive Coastal Zone, Cory James Staryk

OES Theses and Dissertations

Net community metabolism (NCM), the balance between primary production and community respiration, was measured during two cruises, June 2011 and August 2012, in the Middle Atlantic Bight, Georges Bank and Gulf of Maine. Net heterotrophy was observed in Georges Bank and Gulf of Maine during the June 2011 cruise. During the August 2012 cruise, net heterotrophy was observed in the Middle Atlantic Bight and net autotrophy was observed in Georges Bank and the Gulf of Maine. Dark community respiration increased (DCR) with biomass and temperature. Gross community production (GCP) also increased with Chl a, bicarbonate uptake, and temperature. Net …

Ruminant Self-Medication Against Gastrointestinal Nematodes: Evidence, Mechanism, And Origins, Juan J. Villalba, James Miller, Eugene D. Ungar, Serge Y. Landau, John Glendinning

Wildland Resources Faculty Publications

Gastrointestinal helminths challenge ruminants in ways that reduce their fitness. In turn, ruminants have evolved physiological and behavioral adaptations that counteract this challenge. Ruminants display anorexia and avoidance behaviors, which tend to reduce the incidence of parasitism. In addition, ruminants appear to learn to self-medicate against gastrointestinal parasites by increasing consumption of plant secondary compounds with antiparasitic actions. This selective feeding improves health and fitness. Here, we review the evidence for self-medication in ruminants, propose a hypothesis to explain self-medicative behaviors (based on post-ingestive consequences), and discuss mechanisms (e.g., enhanced neophilia, social transmission) that may underlie the ontogeny and spread …

Naïve Hosts Of Avian Brood Parasites Accept Foreign Eggs, Whereas Older Hosts Fine-Tune Foreign Egg Discrimination During Laying, Csaba Moskát, Miklós Bán, Mark E. Hauber

Publications and Research

Background: Many potential hosts of social parasites recognize and reject foreign intruders, and reduce or altogether escape the negative impacts of parasitism. The ontogenetic basis of whether and how avian hosts recognize their own and the brood parasitic eggs remains unclear. By repeatedly parasitizing the same hosts with a consistent parasitic egg type, and contrasting the responses of naïve and older breeders, we studied ontogenetic plasticity in the rejection of foreign eggs by the great reed warbler (Acrocephalus arundinaceus), a host species of the common cuckoo (Cuculus canorus).

Results: In response to experimental parasitism before the …

Ex Uno Plures: Clonal Reinforcement Drives Evolution Of A Simple Microbial Community, Margie A. Kinnersley, Jared Wenger, Evgueny Kroll, Julian Adams, Gavin Sherlock, Frank Rosenzweig

Biological Sciences Faculty Publications

A major goal of genetics is to define the relationship between phenotype and genotype, while a major goal of ecology is to identify the rules that govern community assembly. Achieving these goals by analyzing natural systems can be difficult, as selective pressures create dynamic fitness landscapes that vary in both space and time. Laboratory experimental evolution offers the benefit of controlling variables that shape fitness landscapes, helping to achieve both goals. We previously showed that a clonal population of E. coli experimentally evolved under continuous glucose limitation gives rise to a genetically diverse community consisting of one clone, CV103, that …

Ecological Biogeography Of The Terrestrial Nematodes Of Victoria Land, Antarctica, Byron Adams, Diana Wall, Ross Virginia, Emma Broos, Matthew A. Knox

Dartmouth Scholarship

The terrestrial ecosystems of Victoria Land, Antarctica are characteristically simple in terms of biological diversity and ecological functioning. Nematodes are the most commonly encountered and abundant metazoans of Victoria Land soils, yet little is known of their diversity and distribution. Herein we present a summary of the geographic distribution, habitats and ecology of the terrestrial nematodes of Victoria Land from published and unpublished sources. All Victoria Land nematodes are endemic to Antarctica, and many are common and widely distributed at landscape scales. However, at smaller spatial scales, populations can have patchy distributions, with the presence or absence of each species …

Comparative Population Assessments Of Nautilus Sp. In The Philippines, Australia, Fiji, And American Samoa Using Baited Remote Underwater Video Systems, Gregory Jeff Barord, Frederick Dooley, Andrew Dunstan, Anthony Ilano, Karen N. Keister, Heike Neumeister, Thomas Preuss, Shane Schoepfer, Peter D. Ward

Publications and Research

The extant species of Nautilus and Allonautilus (Cephalopoda) inhabit fore-reef slope environments across a large geographic area of the tropical western Pacific and eastern Indian Oceans. While many aspects of their biology and behavior are now well-documented, uncertainties concerning their current populations and ecological role in the deeper, fore-reef slope environments remain. Given the historical to current day presence of nautilus fisheries at various locales across the Pacific and Indian Oceans, a comparative assessment of the current state of nautilus populations is critical to determine whether conservation measures are warranted. We used baited remote underwater video systems (BRUVS) to make …

Anthropogenic Litter In Urban Freshwater Ecosystems: Distribution And Microbial Interactions, Timothy Hoellein, Miguel Rojas, Adam Pink, Joseph Gasior, John J. Kelly

Biology: Faculty Publications and Other Works

Accumulation of anthropogenic litter (i.e. garbage; AL) and its ecosystem effects in marine environments are well documented. Rivers receive AL from terrestrial habitats and represent a major source of AL to marine environments, but AL is rarely studied within freshwater ecosystems. Our objectives were to 1) quantify AL density in urban freshwaters, 2) compare AL abundance among freshwater, terrestrial, and marine ecosystems, and 3) characterize the activity and composition of AL biofilms in freshwater habitats. We quantified AL from the Chicago River and Chicago's Lake Michigan shoreline, and found that AL abundance in Chicago freshwater ecosystems was comparable to previously …

Stop Lion Hunting, Paul A. Johnsgard

Paul Johnsgard Collection

According to my informal tally, at least seven mountain lions have so far been killed in Nebraska during 2014, as follows: 1 & 2: Two were killed on January 1 and 2, at the start of Nebraska's first hunting season. Both were killed by treeing the animals with dogs, then shooting them execution style. One was killed by a man who bought the permit ($13,500) at auction; the other by a teenager who won a Game & Park's fund -raising lottery. 3: An adult male was accidentally killed by a vehicle on February 1, in Sioux County. 4: An adult …

New Species Of Ctenomys Blainville 1826 (Rodentia: Ctenomyidae) From The Lowlands And Central Valleys Of Bolivia, Scott Lyell Gardner, Jorge Salazar-Bravo, Joseph A. Cook

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The genus Ctenomys Blainville 1826 is one of the most diverse of South American hystricognath rodents. Currently, nine species of tuco-tucos are reported from Bolivia, four at elevations above 2,000 m and five inhabiting the lowlands (< 1,000 m). In the present paper, morphology, karyology, and phylogenetic analyses of DNA sequences for a mitochondrial locus were used to assess the taxonomic status of specimens of Ctenomys from localities beyond the previously known ranges of these rodents in the departments of Chuquisaca, Cochabamba, Santa Cruz, and Tarija. Based on these analyses, we describe four new species in the genus Ctenomys, all apparently endemic to the country. In addition, we place Ctenomys goodfellowi Thomas 1921 in synonymy under C. boliviensis Waterhouse 1848 and confirm the presence of C. nattereri …

Cercyonis Pegala Agawamensis (Satyridae): A New Butterfly Subspecies From The Coastal Salt Marshes Of The Northeastern United States Of America, Matthew D. Arey, Alex Grkovich

The Taxonomic Report of the International Lepidoptera Survey

A new subspecies of the Common Wood Nymph (Cercyonis pegala) from the New England coastline in the northeastern region of the United States is described on the basis of phenotype, behavior, habitat, seasonality, flight period, and phenology. Agawamensis is univoltine as in all pegala. The newly described subspecies occurs almost entirely in coastal salt marshes and estuarine meadows, quite atypical as understood for Cercyonis pegala. The newly described subspecies agawamensis predominately prefers and occurs within large open salt marshes but can also be found in similar habitat along smaller tidal rivers, coastal inlets and streams

A Case Of Sympatric Celastrina Ladon (Cramer), Celastrina Lucia (W. Kirby) And Celastrina Neglecta (Edwards) (Lycaenidae: Polyommatinae) In Northern Virginia, With Additional Records Of C. Lucia In Virginia, Harry Pavulaan

The Taxonomic Report of the International Lepidoptera Survey

A case of fully sympatric Celastrina ladon, C. lucia, and early spring brood C. neglecta is documented at a site in northern Virginia. Observations indicate that all three species occupy the same habitat, fly during the same flight period and utilize the same hostplant with no evidence of hybridization. C. ladon and C. lucia are obligate univoltines while C. neglecta is multivoltine. A later flight (second brood) of Celastrina neglecta at the same site utilizes eriophyid mite-induced leaf galls on the very same host tree species. Additional Virginia records of C. lucia are documented.

Larval Host Plants Of Enodia Anthedon, Satyrodes Appalachia And S. Eurydice In Vermont, Usa, David J. Hoag

The Taxonomic Report of the International Lepidoptera Survey

Field observation and captive rearing was used to clarify larval host plant use in Enodia anthedon, Satyrodes appalachia, and S. eurydice in Vermont, USA. In nature S. appalachia larvae were found on Carex lacustris, C. lupulina, C. gracillima, and C. tuckermanii. Enodia anthedon in nature was found to oviposit on grass and on Carex lacustris. Larvae of E. anthedon were found on C. lacustris and C. lupulina. In captivity, all but two E. anthedon larvae chose Carex over grass. Both E. appalachia and E. anthedon …

Effects Of The Interception Of Litterfall By The Understory On Carbon Cycling In Eucalyptus Plantations Of South China, Long Yang, Jun Wang, Yuhui Huang, Dafeng Hui, Meili Wen

Biology Faculty Research

For the purposes of forest restoration, carbon (C) fixation, and economic improvement, eucalyptus (Eucalyptus urophylla) has been widely planted in South China. The understory of eucalyptus plantations is often occupied by a dense community of the fern Dicranopteris dichotoma, which intercepts tree canopy leaf litter before it reaches the ground. To understand the effects of this interception of litterfall on C cycling in eucalyptus plantations, we quantified the mass of intercepted litter and the influences of litterfall interception on litter decomposition and soil respiration. The total mass of E. urophylla litterfall collected on the understory was similar to that collected …

Comparing Population Density Estimation Techniques For Columbia Black-Tailed Deer (Odocoileus Hemionus Columbianus): Fecal Standing Crop And Distance Sampling Methods, Jubilee D. Brenneman

Honors Projects

I estimated deer density and population size on Blakely Island, WA, using the fecal standing crop (FSC) method described by Martin et al. (2011). I compared the FSC method with a well established and broadly applicable estimation method, distance sampling. Additionally, architecture of a commonly browsed shrub, Ocean Spray (Holodiscus discolor), was measured as an indicator of browsing pressure. Fecal standing crop was estimated by counting pellet groups along 26, 100 x 2m line transects. Deer density was estimated using these data and the equation derived by Martin et al. (2011). Distance sampling consisted of recording perpendicular distance …

Early Back-To-Africa Migration Into The Horn Of Africa, Jason A. Hodgson, Connie J. Mulligan, Ali Al-Meeri, Ryan L. Raaum

Publications and Research

Genetic studies have identified substantial non-African admixture in the Horn of Africa (HOA). In the most recent genomic studies, this non-African ancestry has been attributed to admixture with Middle Eastern populations during the last few thousand years. However, mitochondrial and Y chromosome data are suggestive of earlier episodes of admixture. To investigate this further, we generated new genome-wide SNP data for a Yemeni population sample and merged these new data with published genome-wide genetic data from the HOA and a broad selection of surrounding populations. We used multidimensional scaling and ADMIXTURE methods in an exploratory data analysis to develop hypotheses …

Assessing Landscape Constraints On Species Abundance: Does The Neighborhood Limit Species Response To Local Habitat Conservation Programs?, Christopher F. Jorgensen, Larkin A. Powell, Jeffrey J. Lusk, Andrew A. Bishop, Joseph J. Fontaine

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and often fail to consider the importance of ecological mechanisms that act across spatial scales. We located survey sites across southern Nebraska, USA and conducted point counts to estimate Ring-necked Pheasant abundance, an economically important species to the region, while simultaneously quantifying landscape effects using a …

Using Otolith Elemental Composition To Track The Habitat Use, Movements, And Life History Patterns Of Common Snook (Centropomus Undecimalis) And Red Drum (Sciaenops Ocellatus) In The Tampa Bay Estuary, Holly Jacqueline Rolls

USF Tampa Graduate Theses and Dissertations

Knowledge of fish habitat use and connectivity is critical for understanding the structure and dynamics of fish populations and, therefore, necessary for the implementation of successful fisheries management strategies. Tagging is an effective means of providing such information, and the elemental composition contained within fish otoliths is increasingly being used as a natural tag. The chemical composition of otoliths reflects the incorporation of elements from different water bodies and can thus be used to understand the habitat use, movements, and life history patterns of fishes. To assess the applicability of otolith elemental composition as a tagging technique within the Tampa …

Factors In Long-Term Algal Composition Of Cayman Reefs: Determining Effects Of Natural Disturbance And Grazer Pressures, Patrick J. Doughty

Lawrence University Honors Projects

Abstract. Current research shows a worldwide shift in the population dynamics of reefs attributed to increasing human disturbance. With increasing nutrient additions, competitive populations of turf and macroalgae bloom and dominate coral reefs leading to decreased health of the reef as a whole. Unfortunately, few studies have been done showing the long-term changes in algae composition on reefs. In order to find the significant factors in the long-term composition of algae on reefs, algae and fish abundance data were collected through the Lawrence University Marine Program and analyzed for this study. Algae were split into three functional groups: encrusting, turf …

Human Diversity In Jordan: Polymorphic Alu Insertions In General Jordanian And Bedouin Groups, Daniela Zanetti, May Sadiq, Robert Carreras-Torres, Omar Khabour, Almuthanna Alkaraki, Esther Esteban, Marc Via, Pedro Moral

Human Biology Open Access Pre-Prints

Jordan, located in the Levant region, is a crucial area to investigate human migration between Africa and Eurasia. Even thought, the genetic history of Jordanians is far to be clarified including the origin of the Bedouins today resident in Jordan. Here, we provide new genetic data on autosomal independent markers in two Jordanian population samples (Bedouins and general population) in order to approach the genetic diversity inside this country and to give new information about the genetic position of these populations in the frame of the Mediterranean and Middle East area. The analyzed markers are 18 Alu polymorphic insertions characterized …