Ecology and Evolutionary Biology Commons^™

Squalicorax Chips A Tooth: A Consequence Of Feeding-Related Behavior From The Lowermost Navesink Formation (Late Cretaceous: Campanian-Maastrichtian) Of Monmouth County, New Jersey, Usa, Martin A. Becker, John A. Chamberlain Jr.

Publications and Research

Chipped and broken functional teeth are common in modern sharks with serrated tooth shape. Tooth damage consists of splintering, cracking, and flaking near the cusp apex where the enameloid is broken and exposes the osteodentine and orthodentine. Such damage is generally viewed as the result of forces applied during feeding as the cusp apex impacts the skeletal anatomy of prey. Damage seen in serrated functional teeth from sharks Squalicorax kaupi [1] and Squalicorax pristodontus [1] from the late Cretaceous lowermost Navesink Formation of New Jersey resembles that occurring in modern sharks and suggests similar feeding behavior. Tumbling experiments using serrated …

The Effects Of A Riverline Flood On The Ecology And Habitat Of The Swainson's Warbler And A Test Of The Swainson's Warbler's Habitat Sustainability Index, Bryan Michael Reiley

Student Theses and Dissertations

We attempted to validate the recently published Habitat Suitability Index (HSI) model for the Swainson's Warbler using data collected between 2005 and 2010 at Big Island (BI), White River National Wildlife Refuge (WRNWR), and Saint Francis National Forest (SFNF). The Swainson's Warbler HSI was tested in two ways; by comparing unoccupied and occupied location HSI scores and by comparing forest stand HSI scores to abundance estimates of Swainson's Warblers in each stand. We found HSI scores were significantly lower (P = 0.006) for sites occupied by Swainson's Warblers (mean = 0.66) than those that were unoccupied (mean = 0.77) at …

Will Extreme Climatic Events Facilitate Biological Invasions?, Jeffrey M. Diez, Carla M. D'Antonio, Jeffrey S. Dukes, Edwin D. Grosholz, Julian D. Olden, Cascade J.B. Sorte, Dana M. Blumenthal, Bethany A. Bradley, Regan I. Early, Inés Ibáñez, Sierra J. Jones, Joshua J. Lawler, Luke P. Miller

Faculty Publications, Biological Sciences

Extreme climatic events (ECEs) – such as unusual heat waves, hurricanes, floods, and droughts – can dramatically affect ecological and evolutionary processes, and these events are projected to become more frequent and more intense with ongoing climate change. However, the implications of ECEs for biological invasions remain poorly understood. Using concepts and empirical evidence from invasion ecology, we identify mechanisms by which ECEs may influence the invasion process, from initial introduction through establishment and spread. We summarize how ECEs can enhance invasions by promoting the transport of propagules into new regions, by decreasing the resistance of native communities to establishment, …

Phylogenetic Relationships And Character Evolution Of The Neotropical Butterfly Genus Hamadryas (Nymphalidae: Biblidinae), Ivonne J. Garzon

LSU New Orleans Theses and Dissertations

The butterflies in the genus Hamadryas are popular and noticeable representatives of the Neotropical Lepidoptera fauna. After a thorough taxonomic revision, 20 species were acknowledged within the genus, however no hypothesis of their phylogenetic relationship was proposed. The present dissertation provides a step further into the understanding of this fascinating group of butterflies not only by proposing the first phylogenetic hypothesis for the genus based on morphological and molecular data, but also by exploring for the first time in a group of butterflies the potential effect of venation associated with an specific behaviour on wing shape. Furthermore, this dissertation provides …

Fish Assemblage Dynamics And Red Drum Habitat Selection In Bayou St. John And Associated Urban Waterways Located Within The City Of New Orleans, Louisiana, Patrick W. Smith Mr.

LSU New Orleans Theses and Dissertations

Bayou St. John (BSJ) and City Park Lakes and Lagoons (CPLL) are urban waterways in New Orleans, Louisiana. I studied habitat selection of red drum in BSJ, and fish assemblage change in BSJ and CPLL over 40 years. Temperature was found to be the best predictor of red drum habitat selection in Bayou St. John, while salinity and change in depth also were found to be good predictors for certain sites. Potential prey item abundance did not appear to influence habitat selection. Using data from 1971 – 2010, nearshore habitats in CPLL were affected by Hurricane Katrina, but have sense …

Implications Of Land Development On Nomadic Pastoralism: Ecological Relaxation And Biosocial Diversity In Human Populations, Hannah R. Bradley

Scripps Senior Theses

Nomadic pastoralism is an ancient subsistence strategy, historically balanced and in continuity with sedentary societies. Sedentarization of nomads occurs normally because of ecological disasters, economic opportunities, urbanization, and government policy. In this paper, I examine the effect of changing land use patterns on nomadic pastoral populations in Asia, Africa, and the Middle East, using biogeographic methodology to further explore the contemporary relationship between humans and their environments. Nomadic population information gleaned from diverse ethnographic studies, and GIS data on anthropogenic biome distributions, were used to calculate changes in nomadic population, area of developed land, and nomadic/sedentary population density over the …

Devil In A Hula Skirt: Comparative Conservation Efforts Between The United States And Australia Using Two Endemic Species As Case Studies, Sarah Catherine Kuchinsky

Undergraduate Honors Thesis Collection

There is a biodiversity crisis in our midst. An abundance of technology and innovation in the last 200 years has revamped our world but at the cost of pushing many species to extinction. Since the passing of the Endangered Species Act by Congress in 1973, more than 100 species in the United States have disappeared (Wilson 2006). The International Union for the Conservation of Nature (IUCN) stats that "19,265 species out of the 59,507 so far assessed as threatened with extinction," (IUCN 2011). Extinction is the result of a combination of factors caused by human environmental disturbance. Disturbances in the …

Pre-Whaling Genetic Diversity And Population Ecology In Eastern Pacific Gray Whales: Insights From Ancient Dna And Stable Isotopes, S Elizabeth Alter, Seth D. Newsome, Stephen R. Palumbi

Publications and Research

Commercial whaling decimated many whale populations, including the eastern Pacific gray whale, but little is known about how population dynamics or ecology differed prior to these removals. Of particular interest is the possibility of a large population decline prior to whaling, as such a decline could explain the ,5-fold difference between genetic estimates of prior abundance and estimates based on historical records. We analyzed genetic (mitochondrial control region) and isotopic information from modern and prehistoric gray whales using serial coalescent simulations and Bayesian skyline analyses to test for a pre-whaling decline and to examine prehistoric genetic diversity, population dynamics and …

Evolution Of The Bacteriorhodopsin Gene Bop In Haloarchaea, Maulik Jitesh Jani

Honors Scholar Theses

Rhodopsins are among the most studied protein families. They all incorporate a light based chromophore and an opsin. They are found in all three domains of life and can be found in diverse environments, such as the membrane of the haloarchaea, Haloarcula (Haa) marismortui, growing on salt flats in Death Valley, to within human tissues and deep sea water (Briggs and Spudich 2005). Rhodopsins can serve multifarious purposes, from phototaxis away from harmful light to efficient energy generation. Bacteriorhodopsin is the best studied rhodopsin in haloarchaea. The evolutionary pattern of bacteriorhodopsin through its gene, bop, is the main focus of …

An Approach For Use Of Dual Frequency Identification Sonar (Didson) To Quantify Behavioral Aspects Of Piscivory At Ecologically Relevant Time And Space Scales, Victoria E. Price

Master's Theses

Predator-prey interactions of large vagile fishes are difficult to study in the ocean due to limitations in the space and time requirements for observations. Small-scale direct underwater observations by divers (<10m >radius) and large-scale hydroacoustic surveys (10s - 100s km2) are traditional approaches. However, large piscivorous predators identify and attack prey at the scale of meters to tens of meters. Dual- Frequency Identification Sonar, or DIDSON, is a high-resolution acoustic camera operating in the MHz range that provides detailed continuous video-like imaging of objects out to 30 m range. This technology can be used to observe predator-prey interactions at ecologically …

Terrestrial Habitat Requirements Of Nesting Freshwater Turtles, D. A. Steen, J. P. Gibbs, K. A. Buhlman, J. L. Carr, B. W. Compton, J. D. Congdon, J. S. Doody, J. C. Godwin, Kerry L. Holcomb, D. R. Jackson, F. J. Janzen, G. Johnson, M. T. Jones, J. T. Lamer, T. A. Langen, M. V. Plummer, J. W. Rowe, R. A. Saumure, J. K. Tucker, D. S. Wilson

All Faculty Scholarship for the College of the Sciences

Because particular life history traits affect species vulnerability to development pressures, cross-species summaries of life history traits are useful for generating management guidelines. Conservation of aquatic turtles, many members of which are regionally or globally imperiled, requires knowing the extent of upland habitat used for nesting. Therefore, we compiled distances that nests and gravid females had been observed from wetlands. Based on records of > 8000 nests and gravid female records compiled for 31 species in the United States and Canada, the distances that encompass 95% of nests vary dramatically among genera and populations, from just 8 m for Malaclemys to …

The Ecological Role Of Rhizophytic Green Algae In Soft-Bottom Habitats, Laura Bedinger

USF Tampa Graduate Theses and Dissertations

Rhizophytic algae are large, abundant primary producers throughout tropical and subtropical areas worldwide where they grow as an understory in seagrass beds, as well as form mixed or monospecific beds of exclusively rhizophytic algal species. In this dissertation, "rhizophytic algae" refers to coenocytic green algae (Chlorophyta) in the order Bryopsidales that use a net of rhizoids to anchor in unconsolidated sediments. In the development of seagrass beds, rhizophytic algae colonize bare patches and are thought to facilitate seagrass colonization by stabilizing sediments and providing organic matter. However, despite their prominence little is known about many aspects of the ecology of …

Genetic Variation In Potentially Virulent Vibrio Parahaemolyticus From The Northern Gulf Of Mexico, Nicholas Felix Noriea Iii

Dissertations

Vibrio parahaemolyticus (V_p) is a gram-negative bacterium found naturally in marine and estuarine environments. V_p is found in oysters including those which are later consumed by the public. Sub-populations of potentially virulent Vp contain specific virulence factors and are relevant human pathogens capable of causing gastroenteritis, wound infection, and death. The tdh and trh genes, both encoding hemolysins, have been correlated with the majority of clinical V_p isolates but have not been shown to be the definitive virulence factors.

A total of 146 V_p isolates from the northern Gulf of Mexico were collected and probed …

Effects Of Hypoxia And 4-Tert-Octylphenol On Gene Expression Profiles Of The Sheepshead Minnow (Cyprinodon Variegatus), Arthur Alan Karels

Dissertations

Hypoxia occurs in estuaries of northern Gulf of Mexico and world-wide, with increasing frequency/severity via eutrophication and anthropogenic influences. Hypoxia inducible factors (HIFs) form transcriptional complex and bind DNA at hypoxia responsive elements (HREs) in promoter regions of genes needed for systemic and cellular adaptation of fish to low dissolved oxygen (hypoxia, DO <2.0 mg/ml). Hypoxia-induced activation of HIF-αs can lead to a cascade of downstream activation, such as erythropoietin (EPO). Return to normal DO levels (normoxia), prolyl hydroxylases (PHDs) are activated to degrade HIF-αs back to baseline. Fish are affected by environmental estrogen mimics, like 4-tert-octylphenol (4tOP), binding estrogen receptor alpha (ERα) at estrogen responsive elements (EREs) and activating genes vitellogenin (VTG). Previous research showed overlap or crosstalk between these two mechanistic pathways. Hypoxia triggers unknown factors regulating ERE-mediated ERα signaling pathway, and stressor combinations could increase/decrease hypoxic or endocrine pathway. Research examined molecular/physiological effects of hypoxia (acute and chronic, moderate and severe) and 4tOP (~60μg/L)on adult male and/or female sheepshead minnow (Cyprinodon variegatus). Three genes identified, cloned, and sequenced (HIF-1α, HIF-2α, and PHD3), plus previously identified genes EPO and VTG, were examined in liver/testes exposed to hypoxia and/or 4tOP for cellular/physiological changes. Endpoints examined included mRNA expression from real-time PCR of HIF-1α, HIF-2α, PHD3, EPO, and VTG using cDNA from total RNA extracts, and microarray analyses of genes expressed during the transition from hypoxia back to normoxia. Phylogenetic analyses confirmed isolation of two HIF-α isofoms (HIF-1α and HIF-2α) and the PHD3 isoform. Significant up-regulation of PHD3 occurred within 10 hrs of chronic hypoxia, and persisted when severe (1.5 mg/L) and declined when moderate (~2.5mg/L). Significant up-regulation of HIF-1α and EPO occurred within 30 minutes to 2 hours of onset of acute severe and very severe (~1.08mg/L) hypoxia. Hypoxia acted similar to an estrogen mimic, with huge up-regulation of VTG gene expression in males, and increased VTG levels (additive effect) when hypoxia was combined with 4tOP. Microarray analyses showed 125 genes with significant transcriptional change, with up- or down-regulation from transitions of: (1) hypoxia (72 hrs) to normoxia (74 hrs) and (2) hypoxia+4tOP (72 hrs) to normoxia+4tOP (74 hrs).

Comparison Of Creel Survey Data To Traditional Sampling Techniques In Pit-Lake Fisheries Of Muhlenberg County, Kentucky, Derek L. Rupert

Masters Theses & Specialist Projects

Populations of largemouth bass, Micropterus salmoides, and bluegill, Lepomis macrochirus, were evaluated from five pit-lakes in Muhlenberg County, Kentucky, to determine if accurate proportional stock density (PSD) data can be obtained from a mandatory creel survey. It was hypothesized that the proportion of stock-to-quality (300-400mm) and quality (+400mm) largemouth bass from four years (2007-2010) of creel survey data would be statistically similar to those generated through on-site sampling in 2011. Fish were collected via a combination of gill netting, seining, hook-and-line fishing, and boat-mounted electro-fishing. In two of the pit-lakes, the sampling-generated length frequency data was not significantly …

Integrating Ecology And Economics For Restoration: Using Ecological Indicators In Valuation Of Ecosystem Services, Eric T. Schultz, Robert Johnston, Kathleen Segerson, Elena Y. Besedin

EEB Articles

Because it can uniquely furnish insights into nonuse values for ecosystem services, survey-based Stated Preference (SP) valuation is widely used to estimate the benefits of ecological restoration. SP surveys ask respondents to select among restoration options yielding different ecological outcomes. This review examines the representation of ecological outcomes in SP studies seeking to quantify values for restoration of aquatic ecosystems. To promote the validity of ecological indicators used in SP valuation, we identified four standards: indicators should be measurable, interpretable, applicable, and comprehensive. We reviewed recent SP studies estimating the value of aquatic ecosystem services to assess whether ecological indicators …

Landscape And Habitat Attributes Influencing Beaver Distribution, Ryan John Leary

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Removal of beaver across the North America landscape from the 1600s through the 1800s has played a major influence on the alteration of stream and riparian resources. Degradation of riparian habitats has negatively impacted many wildlife and fish species, including species listed under the Endangered Species Act. The ability of beavers to modify stream ecosystems offers a unique opportunity to restore these habitats. Many private and government agencies are working towards using beaver as a restoration tool, not only for better functioning ecosystems but also to benefit humans. Taking the big picture look, beaver and their ability to modify the …

The Role Of Fine-Scale Habitat Associations In Structuring Spider Assemblages: Determinants Of Spatial Patterns In Community Composition, Stephanie M. Cobbold

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ecologists strive to identify the mechanisms that drive the identity and abundance of species in different locations, because a better understanding of such factors enables them to better predict the effects of habitat modification on organisms, and to identify landscapes in which species are likely to benefit from conservation interventions. However, there is still no consensus on the mechanisms behind geographical variation in species diversity. The primary objective of this dissertation was to focus on spider assemblages to investigate how the fine-scale habitat associations of organisms may drive the composition of their communities at larger scales. Research was conducted in …

Increase In Ponderosa Pine Density In The Nebraska Sandhills: Impacts On Grassland Plant Diversity And Productivity, Alexa Armstrong

Department of Environmental Studies: Undergraduate Student Theses

Increase in woody species encroachment into semi-arid grasslands and savannas has been of great concern at a global level. Temperature and precipitation are key factors determining vegetation cover; however other factors, such as fire regime and grazing may be at play in semi-arid ecosystems. Historically, in Nebraska’s semi-arid grasslands, woody species have been controlled by periodic fires. Changes in social values and land use, fire suppression, overgrazing, increased N deposition, and climate change, have attributed to the observed shift from grasslands to shrublands or woodlands. The primary objectives of this study were to determine the impacts of Ponderosa pine ( …

An Evaluation Of Stocking And Habitat Influences On Channel Catfish In Lentic Ecosystems Of The Great Plains, Lindsey K. Chizinski

School of Natural Resources: Dissertations, Theses, and Student Research

Channel catfish Ictalurus punctatus is an important sport fish, particularly in the Great Plains. In Nebraska, a majority of anglers target channel catfish, and fishing activities are a vital part of the state’s economy. Lentic water bodies provide the primary fishing opportunity for catfish anglers in Nebraska. Despite the popularity and economic importance of channel catfish, little is known of its population dynamics or habitat requirements, and existing studies often profile river populations. Current standards for sampling channel catfish in lentic systems often yield inadequate catch to assess populations. The objective of this study was to utilize a recently developed …

Exploring The Seed Bank Dynamics Of Red Brome: Longevity, Density, And Relationship To Fire, Benjamin S. Jurand

UNLV Theses, Dissertations, Professional Papers, and Capstones

This research explores several untested aspects of the seed bank characteristics of red brome (Bromus rubens), an invasive annual grass in southwestern United States arid lands. Red brome is a formidable competitor to native plant species, both annual and perennial alike, and produces many seeds that germinate easily. The stalks of red brome contribute continuous-cover fuel loads that facilitate wildfires destructive to mature native Mojave Desert plant communities. This makes it a priority species for land managers, particularly when dealing with recovery after fire.

This project addressed questions related to the longevity of red brome seeds in soil seed banks …

The Ecological Roles Of Podostemum Ceratophyllum And Cladophora In The Habitat And Dietary Preferences Of The Riverine Caddisfly Hydropsyche Simulans, Brenna Tinsley

Mahurin Honors College Capstone Experience/Thesis Projects

The net-spinning caddisfly Hydropsyche simulans can be a common inhabitant of shallow reaches in riverine systems, and is easily the most common hydropsychid in the upper Green River, Kentucky. This study was performed in summer 2011 and focused on two main questions: 1. Do the larvae of the riverine caddisflies H. simulans and Cheumatopsyche preferentially inhabit dense patches of P. ceratophyllum compared to bare substrates in the upper Green River?, and 2. Do larvae of H. simulans and Cheumatopsyche consume the filamentous alga Cladophora during the annual late summer algal bloom in the upper Green River? Densities of both hydropsychid …

The Herring River Estuary: Understanding Salt Marsh Restoration And How To Predict The Response Of Phragmites Australis To Increased Tidal Flow, Theresa Murphy

Senior Honors Projects

My presentation invites you to learn about what is involved in planning a salt marsh restoration project. The Herring River Estuary is a disturbed salt marsh ecosystem at Cape Cod National Seashore which has been diked since 1909. The National Park Service (NPS), in cooperation with many partners, is engaged in efforts to restore the now impacted 1,100 acre estuary by re-introducing tidal flow. There is significant complexity involved in trying to restore such an intricate system- from the multitude of environmental factors to important social and economic consequences. There are also several benefits to restored tidal flow. My thesis …

Productivity And Habitat Features Of Swainson's Hawks (Buteo Swainsoni) Nesting In Suburban And Agricultural Areas Of Southwest Idaho, Steven Edward Alsup

Boise State University Theses and Dissertations

I compared nesting success and productivity of Swainson’s Hawks nesting in suburban and agricultural areas in southwest Idaho to assess the effects of land use change on Swainson’s Hawk reproduction. I also evaluated habitat parameters and land use patterns around nesting areas to determine if nest site, habitat, and/or landscape features were related to reproductive success in Swainson’s Hawks. I recorded habitat characteristics, nest tree characteristics, distances to four habitat features, and disturbance types, as well as land use patterns within a 1500m radius around nest trees to assess any differences in nest site characteristics, habitat features, and/or landscape features …

Ribosomal Rna Gene-Based And Multigene Phylogenies Of Smittium (Harpellales) And Allies—Toward Unraveling Relationships Among Early-Diverging Fungi, Yan Wang

Boise State University Theses and Dissertations

Smittium is one of the oldest members of the Harpellales, a group commonly referred to as the “gut fungi”. Gut fungi are endosymbiotic microorganisms that live in the digestive tracts of various Arthropods, worldwide. During the 75 years since the first species, Smittium arvernense, was described, Smittium has increased in number and now includes 81 species. Research on this genus has also helped to advance our understanding of the gut fungi, by serving as a “model” for laboratory studies of the fungal trichomycetes. Many isolates of Smittium have been used for ultrastructural, physiological, host feeding, serological, as well as …

American Pika (Ochotona Princeps): Persistence And Activity Patterns In A Changing Climate, Cody P. Massing

Master's Theses

An increasing amount of evidence suggests that as temperatures increase, montane animals are moving upward in elevation (IPCC 2007, Parmesan and Yohe 2003). As suitable habitats rise in elevation and then disappear altogether, these animals could be pushed to extinction. The American pika, Ochotona princeps, is a montane mammal that lives in western North America, usually at elevations above 1500 m (Smith and Weston 1990). Recent evidence suggests that pika population numbers are dropping in response to rising temperatures (Beever et al. 2010). The pika is a small herbivorous lagomorph, a relative of hares and rabbits. Its habitat is …

Investigating Three Decades Of Vegetation Change In A Mojave Desert Mountain Range, Chris Lee Roberts

UNLV Theses, Dissertations, Professional Papers, and Capstones

This project is a vegetation change study spanning 29 years in the Newberry Mountains of Southern Nevada. Long term monitoring data are crucial for understanding the effects of climate change on vegetation dynamics. Successful management intervention in vegetation change will require identification of early indicator plant species and their responses to climatic cues. This project is one of the oldest comparisons of resurveyed Mojave vegetation community plots with repeatable methodology and the longest survey interval reported for the southeastern Mojave Desert. 103 plots were relocated and resurveyed based on data methods in Jim Holland's thesis titled "A Vegetative Analysis of …

Natural And Constructed Wetlands For Ecosystem And Engineering Services In The Arid And Semi-Arid Regions, Achyut Raj Adhikari

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Las Vegas Wash (LVW) has undergone significant wetlands degradation and soil erosion over the past thirty years due to increasing flow resulting from urbanization and large rainfall events in the Las Vegas Valley Watershed. The increased flow and associated pollution load in the LVW and its adverse impact in Lake Mead have alerted stakeholders to pay a greater attention to explore alternative measures for rehabilitation of wetland ecosystems. This dissertation, using the case of changes in LVW, analyzes and describes ecological and engineering services provided by wetlands in arid and semi-arid regions and provides a knowledge base that can …

Prehistoric Foraging Strategies In The Piute Valley Of Southern Nevada, Christopher Alan Brosman

UNLV Theses, Dissertations, Professional Papers, and Capstones

The Piute Valley of Southern Nevada is an incredibly diverse but arid zone in the eastern portion of the Mojave Desert. Most of this diversity can be attributed to the elevation shifts ranging from the Colorado River basin to the peaks of the surrounding mountain ranges. These peaks and valleys provide a multitude of resource zones in which prehistoric hunter-gatherers could provision themselves throughout the year. For this thesis I have used archaeological survey, paleo-climate models, life-sciences data and ethnographic research to perform an in-depth land use analysis of prehistoric forager adaptations to this challenging but life-sustaining environment.

Recent investigations …

Territories,Territoriality, And Conservation Of The Louisiana Waterthrush And Its Habitat, The Watershed Of The Upper Buffalo National River, Leesia Cheryl Marshall

Graduate Theses and Dissertations

The Louisiana Waterthrush, Parkesia motacilla, is a migratory wood-warbler and breeding season resident of the eastern United States. Males defend breeding territories that extend linearly along clear, fast-flowing, gravel-bottomed, forest streams. Defense includes two song types, primary and extended song. As riverine specialists, birds rely upon aquatic invertebrates as prey and riparian habitat features for nesting. They use a unique foraging maneuver, leaf-pulling, that involves picking up or pulling a leaf from water, and turning it over to search for prey. Their relationship with riparian habitat introduces potential for Louisiana Waterthrushes to serve as indicators of stream health. The …