Ecology and Evolutionary Biology Commons^™

The Impact Of Decadal Land Cover Change On The Global Warming Potential Of Beringian Arctic Tundra, David Hwei-Len Lin

Open Access Theses & Dissertations

Arctic terrestrial ecosystems play an important role in the global carbon cycle. If arctic warming continues to rise as projected, large amounts of soil carbon stored in these ecosystems could be released to the atmosphere as carbon dioxide or methane and positively enhance greenhouse warming. Thus, improving understanding of the likely future state and fate of arctic soil carbon, and the carbon uptake potential of arctic terrestrial ecosystems are well recognized research priorities.

At the pan-arctic scale, decadal increases in NDVI (Normalized Difference Vegetation Index), an index of vegetation productivity, have been observed from satellite imagery, indicating a general greening …

Spatial Ecology Of The Trans-Pecos Rat Snake (Bogertophis Subocularis) In The Chihuahuan Desert Of Trans-Pecos Texas, Arturo Rocha

Open Access Theses & Dissertations

The Trans-Pecos Rat Snake (Bogertophis subocularis) is a medium to large rat snake that occurs from south-central New Mexico, south-central Texas, down into the north-central and northeastern states of Mexico. There is paucity in the ecology of B. subocularis to date. Some North American colubrid snakes, such as Thamnophis sirtalis, are the most represented species in thermal ecology and life history studies in all reptiles. There is nothing known on the winter ecological aspects of this species, and very little information regarding its overall ecology. The goal of this study is to determine home range, movement patterns, habitats and utilization …

An Assessment Of Land Cover Change At The Indio Mountains Research Station, Rebecca Anne Escamilla

Open Access Theses & Dissertations

Land cover change is a significant contributor to environmental change on a global scale. In the arid regions of the southwest US, shrub encroachment is one of the most important forms of land cover change. Many factors contribute to shrub encroachment, which can impact structure and function. In the Chihuahuan Desert, mountain ecosystems are known as biodiversity hotspots and are especially susceptible to environmental change making them useful indicators of global change. The overarching goal of this dissertation is to improve i) understanding of land cover change in a Chihuahuan Desert mountain landscape, and ii) how knowledge of land cover …

What Is The Role Of Isolation And Disturbance On The Diversity Of Aquatic Invertebrates In Former Ranchlands Of The Northern Chihuahuan Desert?, Gena Esposito

Open Access Theses & Dissertations

The Chihuahuan Desert is considered one of the most diverse deserts in the world and its aquatic systems have been identified as unique and of global importance. Despite this, the Chihuahuan Desert has remained relatively unstudied, especially concerning its aquatic systems and how the extreme desert environment has shaped the diversity of the organisms within them. In this study we examined the effects of isolation and disturbance on macroinvertebrate diversity in both temporary and permanent desert ponds. To examine the effects of isolation and desiccation, macroinvertebrates were collected from a permanent spring (Squaw Spring) and six nearby temporary ponds (tanks) …

A Meta-Analysis Of Seaweed Impacts On Seagrasses: Generalities And Knowledge Gaps, Mads Thomsen, Thomas Wernberg, Aschwin H. Engelen, Fernando Tuya, Mat A. Vanderklift, Marianne Holmer, Karen J. Mcglathery, Francisco Arenas, Jonne Kotta, Brian R. Silliman

Research outputs 2012

Seagrasses are important habitat-formers and ecosystem engineers that are under threat from bloom-forming seaweeds. These seaweeds have been suggested to outcompete the seagrasses, particularly when facilitated by eutrophication, causing regime shifts where green meadows and clear waters are replaced with unstable sediments, turbid waters, hypoxia, and poor habitat conditions for fishes and invertebrates. Understanding the situations under which seaweeds impact seagrasses on local patch scales can help proactive management and prevent losses at greater scales. Here, we provide a quantitative review of available published manipulative experiments (all conducted at the patch-scale), to test which attributes of seaweeds and seagrasses (e.g., …

Stable Isotope Analysis Of Busycon Sinistrum To Determine Fort Walton-Period Seasonality At St. Joseph Bay, Northwest Florida, Ryan Michael Harke

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Recent archaeological investigations indicate that coastal Fort Walton cultures in the St. Joseph Bay region of northwest Florida emphasized marine and estuarine foraging. These late prehistoric (A.D. 1000-1500) peoples collected fish, shellfish, and other aquatic resources. At the Richardson's Hammock site (8Gu10), radiocarbon-dated to about A.D. 1300, as at dozens of other shell middens around this salty bay, large gastropods were a major subsistence component. This adaptation is in sharp contrast with that of contemporaneous inland Fort Walton societies, who relied on maize agriculture. It is unknown whether coastal groups represent separate hunter-gatherer-fisher populations or seasonal migrations by inland …

Recipes Of Resolve: Food And Meaning In Post-Diluvian New Orleans, Jessica Claire Menck

Antioch University Dissertations & Theses

In 2005 the city of New Orleans experienced catastrophic flooding as a result of the failure of the federal levee system following Hurricane Katrina. This was an immediate disaster that evolved into a longer-term crisis as the city, state, and national government struggled to respond to the event. This study focuses on one part of managing crisis: meaning making. Specifically, the study investigates meaning making within the food community of New Orleans, asking the questions: is food a way for individuals and groups to make meaning following critical change events such as the failure of the federal levee system in …

Novel Lineages Of Prochlorococcus And Synechococcus In The Global Oceans, Sijun Huang, Steven W. Wilhelm, H. Rodger Harvey, Karen Taylor, Nianzhi Jiao, Feng Chen

OES Faculty Publications

Picocyanobacteria represented by Prochlorococcus and Synechococcus have an important role in oceanic carbon fixation and nutrient cycling. In this study, we compared the community composition of picocyanobacteria from diverse marine ecosystems ranging from estuary to open oceans, tropical to polar oceans and surface to deep water, based on the sequences of 16S-23S rRNA internal transcribed spacer (ITS). A total of 1339 ITS sequences recovered from 20 samples unveiled diverse and several previously unknown clades of Prochlorococcus and Synechococcus. Six high-light (HL)-adapted Prochlorococcus clades were identified, among which clade HLVI had not been described previously. Prochlorococcus clades HLIII, HLIV and …

Diversity, Distribution, And Expression Of Diazotroph Nifh Genes In Oxygen-Deficient Waters Of The Arabian Sea, Amal Jayakumar, Mamoon M. D. Al-Rshadat, Bess B. Ward, Margaret R. Mulholland

OES Faculty Publications

The Arabian Sea oxygen minimum zone (OMZ), the largest suboxic region in the world's oceans, is responsible for up to half of the global mesopelagic fixed nitrogen ( N ) loss from the ocean via denitrification and anammox. Dinitrogen (N₂) fixation is usually attributed to cyanobacteria in the surface ocean. Model prediction and physiological inhibition of N₂ fixation by oxygen, however, suggest that N₂ fixation should be enhanced near the oxygen-deficient zone (ODZ) of the Arabian Sea. N₂ fixation and cyanobacterial nifH genes (the gene encoding dinitrogenase reductase) have been reported in surface waters overlying …

A New Species Of Frog (Strabomantidae: Pristimantis) From Peru With Comments On Its Ectoparasites (Acari: Trombiculidae), Alan W. Brus

Honors Projects

In South America, frogs of the genus Pristimantis are diverse and can be found from lowland forests to elevations of about 4000 m in the Andes. The 444 known species of Pristimantis belong to 16 species groups. One of these groups is the Pristimantis orestes Group, the 14 members of which inhabit the páramo, puna, and upper montane forests in southern Ecuador (3 species) and Peru (11 species). Species of the Pristimantis orestes Group are characterized by having snout-vent lengths ranging from 18.0 to 29.4 mm, short robust bodies, relatively short snouts, narrow digital discs, and areolate ventral skin. Some …

Comparative Developmental Transcriptomics Of Echinoderms, Roy Vaughn

USF Tampa Graduate Theses and Dissertations

The gastrula stage represents the point in development at which the three primary germ layers diverge. At this point the gene regulatory networks that specify the germ layers are established and the genes that define the differentiated states of the tissues have begun to be activated. These networks have been well characterized in sea urchins, but not in other echinoderms. Embryos of the brittle star Ophiocoma wendtii share a number of developmental features with sea urchin embryos, including the ingression of mesenchyme cells that give rise to an embryonic skeleton. Notable differences are that no micromeres are formed during cleavage …

Age Composition And Distribution Of Red Drum (Sciaenops Ocellatus) In Offshore Waters Of The North Central Gulf Of Mexico: An Evaluation Of A Stock Under A Federal Harvest Moratorium, Sean P. Powers, Crystal Hightower, J. Marcus Drymon, Matthew W. Johnson

University Faculty and Staff Publications

Because of a lack of fishery- dependent data, assessment of the recovery of fish stocks that undergo the most aggressive form of management, namely harvest moratoriums, remains a challenge. Large schools of red drum (Sclaenops ocellatus) were common along the northern Gulf of Mexico until the late 1980s when increased fishing effort quickly depleted the stock. After 24 years of harvest moratorium on red drum in federal waters, the stock is in need of reassessment; however, fishery dependent data are not available in federal waters and fishery-independent data are limited. We document the distribution, age composition, growth, and condition of …

Development Of High-Yielding Sweetgum Plantation Systems For Bioenergy Production In The Southeastern United States, Donald J. Kaczmarek, Brian C. Wachelka, Jeff Wright, Victor C. Steel, Doug P. Aubrey, David R. Coyle, Mark D. Coleman

Biology: Faculty Presentations

No abstract provided.

Use Of Real-Time Pcr To Detect Canine Parvovirus In Feces Of Free-Ranging Wolves, L. David Mech, Emily S. Almberg, Douglas Smith, Sagar Goyal, Randall S. Singer

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Using real-time PCR, we tested 15 wolf (Canis lupus) feces from the Superior National Forest (SNF), Minnesota, USA, and 191 from Yellowstone National Park (YNP), USA, collected during summer and 13 during winter for canine parvovirus (CPV)-2 DNA. We also tested 20 dog feces for CPV-2 DNA. The PCR assay was 100%sensitive and specific with a minimum detection threshold of 104 50% tissue culture infective dose. Virus was detected in two winter specimens but none of the summer specimens. We suggest applying the technique more broadly especially with winter feces.

Four Events Of Host Switching In Aspidoderidae (Nematoda) Involve Convergent Lineages Of Mammals, F. Agustín Jiménez-Ruiz, Scott Lyell Gardner, Graciela Navone, Guillermo Ortí

Harold W. Manter Laboratory of Parasitology: Faculty Publications

The Great American Interchange resulted in the mixing of faunistic groups with different origins and evolutionary trajectories that underwent rapid diversification in North and South America. As a result, groups of animals of recent arrival converged into similar habits and formed ecological guilds with some of the endemics. We present a reconstruction of the evolutionary events in Aspidoderidae, a family of nematodes that infect mammals that are part of this interchange, i.e., dasypodids, opossums, and sigmodontine, geomyid, and hystricognath rodents. By treating hosts as discrete states of character and using parsimony and Bayesian inferences to optimize these traits into the …

Return To Beringia: Parasites Reveal Cryptic Biogeographic History Of North American Pikas, Kurt E. Galbreath, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Traditional concepts of the Bering Land Bridge as a zone of predominantly eastward expansion from Eurasia and a staging area for subsequent colonization of lower latitudes in North America led to early inferences regarding biogeographic histories of North American faunas, many of which remain untested. Here we apply a host–parasite comparative phylogeographical (HPCP) approach to evaluate one such history, by testing competing biogeographic hypotheses for five lineages of host-specific parasites shared by the collared pika (Ochotona collaris) and American pika (Ochotona princeps) of North America. We determine whether the southern host species (O. princeps) …

Discovery And Description Of A New Trichostrongyloid Species (Nematoda: Ostertagiinaw), Abomasal Parasites In Mountain Goat, Oreamnos Americanus, From The Western Cordillera Of North America [With Erratum], Eric P. Hoberg, Arthur Abrams, Patricia A. Pilitt, Emily J. Jenkins

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Marshallagia lichtenfelsi sp. n. is a dimorphic ostertagiine nematode occurring in the abomasum of mountain goats, Oreamnos americanus, from the Western Cordillera of North America. Major and minor morphotype males and females are characterized and distinguished relative to the morphologically similar Marshallagia marshalli/Marshallagia occidentalis from North America and Marshallagia dentispicularis, along with other congeners, from the Palearctic region. The configuration of the convoluted and irregular synlophe in the cervical region of males and females of M. lichtenfelsi is apparently unique, contrasting with a continuous and parallel system of ridges among those species of Marshallagia, including …

Climate-Change Refugia In The Sheltered Bays Of Palau: Analogs Of Future Reefs, Robert Van Woesik, Peter Houk, Adelle L. Isechal, Jacques W. Idechong, Steven Victor, Yimnang Golbuu

Ocean Engineering and Marine Sciences Faculty Publications

Coral bleaching and mortality are predicted to increase as climate changeinduced thermal-stress events become more frequent. Although many studies document coral bleaching and mortality patterns, few studies have examined deviations from the expected positive relationships among thermal stress, coral bleaching, and coral mortality. This study examined the response of >30,000 coral colonies at 80 sites in Palau, during a regional thermal-stress event in 2010. We sought to determine the spatial and taxonomic nature of bleaching and examine whether any habitats were comparatively resistant to thermal stress. Bleaching was most severe in the northwestern lagoon, in accordance with satellite-derived maximum temperatures …

Catastrophe And The Life Span Of Coral Reefs, Richard B. Aronson, William F. Precht, Ian G. Macintyre, Lauren T. Toth

Ocean Engineering and Marine Sciences Faculty Publications

A strong earthquake in the western Caribbean in 2009 had a catastrophic impact on uncemented, unconsolidated coral reefs in the central sector of the shelf lagoon of the Belizean barrier reef. In a set of 21 reef sites that had been observed prior to the earthquake, the benthic assemblages of 10 were eradicated, and one was partially damaged, by avalanching of their slopes. Ecological dynamics that had played out over the previous 23 years, including the mass mortalities of two sequentially dominant coral species and a large increase in the cover of an encrusting sponge, were instantaneously rendered moot in …

Diversity And Community Assembly Patterns Of Epigean Vs. Troglobiont Spiders In The Iberian Peninsula, Pedro Cardoso

International Journal of Speleology

Cave-obligate organisms usually have smaller ranges and their assemblages have higher beta diversity than their epigean counterparts. Phylogenetic and functional diversity is usually low in cave communities, leading to taxonomic and functional disharmony, with entire groups missing from the subterranean realm. The objective of this work is to compare range, beta diversity, phylogenetic and functional diversity, taxonomic and functional disharmony of epigean versus troglobiont spiders in the Iberian Peninsula.

The median extent of occurrence was found to be 33 times higher for epigean than for cave species. Beta diversity was significantly higher for troglobiont assemblages. Cave assemblages present lower phylogenetic …

Duality Of Terrestrial Subterranean Fauna, Tone Novak, Matjaž Perc, Saška Lipovšek, Franc Janžekovič

International Journal of Speleology

Terrestrial animals in subterranean habitats are often classified according to their degree of morphological or ecological specialization to the subterranean environment. The commonly held view is that, as distance into a cave increases, the frequency of morphologically specialized, i.e., troglomorphic, species or ecological specialization will increase. We tested this hypothesis for the fauna in 54 caves in Slovenia–the classical land for subterranean biology. We found that there exist two ecologically well separated terrestrial subsurface faunas: one shallow and one deep. 1) The shallow subterranean fauna, adapted to the terrestrial shallow subterranean habitats (SSHs) in the upper 10 m of subsurface …

The World’S Deepest Subterranean Community - Krubera-Voronja Cave (Western Caucasus), Alberto Sendra, Ana Sofia P.S. Reboleira

International Journal of Speleology

Subsurface biota extends over a wide variety of habitats that can be spatially interconnected. The largest communities of this subsurface biota inhabit cavities and are well known mainly in caves where biologists are able to have access. Data about deep subterranean communities and arthropods living under one thousand meters was unknown.

An expedition to world’s deepest cave, Krubera-Voronja in Western Caucasus, revealed an interesting subterranean community, living below 2000 meters and represented by more than 12 species of arthropods, including several new species for science. This deep cave biota is composed of troglobionts and also epigean species, that can penetrate …

The Impact Of Black Swan (Cygnus Atratus) Grazing On The Seagrass Halophila Ovalis In The Lower Swan River Estuary, Gary Choney

Theses: Doctorates and Masters

Grazing is an important ecosystem process, influencing community structure and rates of ecosystem processes. Although grazing on seagrasses is generally considered to be minor in many temperate regions of the world, waterfowl are often considered significant grazers in temperate lagoons and estuaries. This study examined spatial and temporal variation in swan abundance, grazing pressure and the impact grazing has on seagrass. Little is known on how grazing rates vary on larger water bodies in the southern hemisphere at different times of year and whether temporal changes in grazing rates affect the ability of seagrasses to tolerate grazing. The plant response …

Seeing Through Others' Eyes : Towards A Hybrid Ecology Of Marine Turtle And Dugong In Australia, Zoe Car

Theses: Doctorates and Masters

This thesis explores the conflict between conservationists and Indigenous communities over the hunting of marine turtles and dugong in Australia, with a view to finding a way to overcome the barriers that prevent the resolution of this issue. I approached this exploration as an ecologist, using the framework of Berkes (2004) who proposed three shifts for the field of ecology. This meant taking a systems approach and investigating the intertwining threads of the issue as possible, with a specific focus on integrating the human aspects of the problem in a participatory manner. By doing so my work entered into a …

Swamp : Walking The Wetlands Of The Swan Coastal Plain ; And With The Exegesis, A Walk In The Anthropocene: Homesickness And The Walker-Writer, Anandashila Saraswati

Theses: Doctorates and Masters

This project is comprised of a creative work and accompanying exegesis. The creative work is a collection of poetry which examines the history and ecology of the wetlands and river systems of the Swan Coastal Plain, and which utilises the practice of walking as a research methodology. For the creative practitioner walking reintroduces the body as a fundamental definer of experience, placing the investigation centrally in the corporeal self, using the physical senses as investigative tools of enquiry. As Rebecca Solnit comments in her history of walking, ‘exploring the world is one of the best ways of exploring the mind, …

Lno Data Access Cedar Creek Site, Long Term Ecological Research Network

Long Term Ecological Research Network

This memorandum asks for feedback on a data availability policy to be used by PI of grants for LTER.