Ecology and Evolutionary Biology Commons^™

Genotyping-By-Sequencing And Ecological Niche Modeling Illuminate Phylogeography, Admixture, And Pleistocene Range Dynamics In Quaking Aspen (Populus Tremuloides), Justin C. Bagley, Neander M. Heming, Eliécer E. Gutiérrez, Upendra K. Devisetty, Karen E. Mock, Andrew J. Eckert, Steven H. Strauss

Ecology Center Publications

Populus tremuloides is the widest‐ranging tree species in North America and an ecologically important component of mesic forest ecosystems displaced by the Pleistocene glaciations. Using phylogeographic analyses of genome‐wide SNPs (34,796 SNPs, 183 individuals) and ecological niche modeling, we inferred population structure, ploidy levels, admixture, and Pleistocene range dynamics of P. tremuloides, and tested several historical biogeographical hypotheses. We found three genetic lineages located mainly in coastal–Cascades (cluster 1), east‐slope Cascades–Sierra Nevadas–Northern Rockies (cluster 2), and U.S. Rocky Mountains through southern Canadian (cluster 3) regions of the P. tremuloides range, with tree graph relationships of the form ((cluster 1, …

Social And General Intelligence Improves Collective Action In A Common Pool Resource System, Jacob Freeman, Jacopo A. Baggio, Thomas R. Coyle

Ecology Center Publications

On a planet experiencing global environmental change, the governance of natural resources depends on sustained collective action by diverse populations. Engaging in such collective action can only build upon the foundation of human cognition in social–ecological settings. To help understand this foundation, we assess the effect of cognitive abilities on the management of a common pool resource. We present evidence that two functionally distinct cognitive abilities, general and social intelligence, improve the ability of groups to manage a common pool resource. Groups high in both forms of intelligence engage in more effective collective action that is also more consistent, despite …

Molecular Differentiation Of Astragalus Species And Varieties From The Western United States: The Chloroplast Dna Bridge Between Evolution And Molecular Systematics, Marwa Neyaz, Daniel Cook, Rebecca Creamer

Poisonous Plant Research (PPR)

Locoweeds are the most widespread poisonous plant problem in the world and have been reported in the Western United States since the 1800s, causing tremendous losses in livestock. Consumption of locoweeds by grazing animals stimulates the neurological disease, locoism, characterized by weight loss, ataxia, and lack of muscular coordination. The name locoweed is used for Astragalus and Oxytropis species known to contain swainsonine, the toxic principle produced by the plant endophytic fungus Undifilum. Astragalus includes 2,500-3,000 species and many varieties that have almost identical morphological characteristics that overlap among species, leading to improper identification. Therefore, the aim of this study …

How Climate Impacts The Composition Of Wolf-Killed Elk In Northern Yellowstone National Park, Christopher C. Wilmers, Matthew C. Metz, Daniel R. Stahler, Michel T. Kohl, Chris Geremia, Douglas W. Smith

Ecology Center Publications

1. While the functional response of predators is commonly measured, recent work has revealed that the age and sex composition of prey killed is often a better predictor of prey population dynamics because the reproductive value of adult females is usually higher than that of males or juveniles.
2. Climate is often an important mediating factor in determining the composition of predator kills, but we currently lack a mechanistic understanding of how the multiple facets of climate interact with prey abundance and demography to influence the composition of predator kills.
3. Over 20 winters, we monitored 17 wolf packs in Yellowstone National Park …

Estimating Population Abundance With A Mixture Of Physical Capture And Pit Tag Antenna Detection Data, Mary M. Conner, Phaedra E. Budy, Richard A. Wilkison, Michael Mills, Peter D. Mackinnon, Mark C. Mckinstry

Ecology Center Publications

The inclusion of passive interrogation antenna (PIA) detection data has promise to increase precision of population abundance estimates (Nˆ ). However, encounter probabilities are often higher for PIAs than for physical capture. If the difference is not accounted for, Nˆ may be biased. Using simulations, we estimated the magnitude of bias resulting from mixed capture and detection probabilities and evaluated potential solutions for removing the bias for closed capture models. Mixing physical capture and PIA detections (pdet) resulted in negative biases in Nˆ . However, using an individual covariate to model differences removed bias and improved precision. From a case …

Genetic Parameters Of Growth And Adaptive Traits In Aspen (Populus Tremuloides): Implications For Tree Breeding In A Warming World, Chen Ding, Andreas Hamann, Rong-Cai Yang, Jean S. Brouard

Aspen Bibliography

Aspen (Populus tremuloides Michx) is a widespread commercial forest tree of high economic importance in western Canada and has been subject to tree improvement efforts over the past two decades. Such improvement programs rely on accurate estimates of the genetic gain in growth traits and correlated response in adaptive traits that are important for forest health. Here, we estimated genetic parameters in 10 progeny trials containing >30,000 trees with pedigree structures based on a partial factorial mating design that includes 60 half-sibs, 100 full-sib families and 1,400 clonally replicated genotypes. Estimated narrow-sense and broad-sense heritabilities were low for height …

Plant–Soil Feedback Effects Altered By Aboveground Herbivory Explain Plant Species Abundance In The Landscape, Johannes Heinze, Alexander Wacker, Andrew Kulmatiski

Ecology Center Publications

Relatively little is known about how plant–soil feedbacks (PSFs) may affect plant growth in field conditions where factors such as herbivory may be important. Using a potted experiment in a grassland, we measured PSFs with and without aboveground insect herbivory for 20 plant species. We then compared PSF values to plant landscape abundance. Aboveground herbivory had a large negative effect on PSF values. For 15 of 20 species, PSFs were more negative with herbivory than without. This occurred because plant biomass on “home” soils was smaller with herbivory than without. PSF values with herbivory were correlated with plant landscape abundance, …

Open Science Principles For Accelerating Trait-Based Science Across The Tree Of Life, Rachael V. Gallagher, Daniel S. Falster, Brian S. Maitner, Roberto Salguero-Gómez, Vigdis Vandvik, William D. Pearse, Florian D. Schneider, Jens Kattge, Jorrit H. Poelen, Joshua S. Madin, Markus J. Ankenbrand, Caterina Penone, Xiao Feng, Vanessa M. Adams, John Alroy, Et Al.

Ecology Center Publications

Synthesizing trait observations and knowledge across the Tree of Life remains a grand challenge for biodiversity science. Species traits are widely used in ecological and evolutionary science, and new data and methods have proliferated rapidly. Yet accessing and integrating disparate data sources remains a considerable challenge, slowing progress toward a global synthesis to integrate trait data across organisms. Trait science needs a vision for achieving global integration across all organisms. Here, we outline how the adoption of key Open Science principles—open data, open source and open methods—is transforming trait science, increasing transparency, democratizing access and accelerating global synthesis. To enhance …

Stoichiometric And Stable Isotope Ratios Of Wild Lizards In An Urban Landscape Vary With Reproduction, Physiology, Space And Time, Andrew M. Durso, Geoffrey David Smith, Spencer B. Hudson, Susannah S. French

Ecology Center Publications

Spatial and temporal variation in stoichiometric and stable isotope ratios of animals contains ecological information that we are just beginning to understand. In both field and lab studies, stoichiometric or isotopic ratios are related to physiological mechanisms underlying nutrition or stress. Conservation and ecosystem ecology may be informed by isotopic data that can be rapidly and non-lethally collected from wild animals, especially where human activity leaves an isotopic signature (e.g. via introduction of chemical fertilizers, ornamental or other non-native plants or organic detritus). We examined spatial and temporal variation in stoichiometric and stable isotope ratios of the toes of Uta …

Reduction Of Taxonomic Bias In Diatom Species Data, Meredith A. Tyree, Ian W. Bishop, Charles P. Hawkins, Richard Mitchell, Sarah A. Spaulding

Ecology Center Publications

Inconsistency in taxonomic identification and analyst bias impede the effective use of diatom data in regional and national stream and lake surveys. In this study, we evaluated the effect of existing protocols and a revised protocol on the precision of diatom species counts. The revised protocol adjusts four elements of sample preparation, taxon identification and enumeration, and quality control (QC). We used six independent data sets to assess the effect of the adjustments on analytical outcomes. The first data set was produced by three laboratories with a total of five analysts following established protocols (Charles et al., Protocols for the …

Nutrient Availability Controls The Impact Of Mammalian Herbivores On Soil Carbon And Nitrogen Pools In Grasslands, Judith Sitters, E. R. Jasper Wubs, Elisabeth S. Bakker, Thomas W. Crowther, Peter B. Adler, Sumanta Bagchi, Jonathan D. Bakker, Lori Biederman, Elizabeth T. Borer, Elsa E. Cleland, Nico Eisenhauer, Jennifer Firn, Laureano Gherardi, Nicole Hagenah, Yann Hautier, Et Al.

Ecology Center Publications

Grasslands are subject to considerable alteration due to human activities globally, including widespread changes in populations and composition of large mammalian herbivores and elevated supply of nutrients. Grassland soils remain important reservoirs of carbon (C) and nitrogen (N). Herbivores may affect both C and N pools and these changes likely interact with increases in soil nutrient availability. Given the scale of grassland soil fluxes, such changes can have striking consequences for atmospheric C concentrations and the climate. Here, we use the Nutrient Network experiment to examine the responses of soil C and N pools to mammalian herbivore exclusion across 22 …

Dynamic Habitat Disturbance And Ecological Resilience (Dyhder): Modeling Population Responses To Habitat Condition, Brendan P. Murphy, Timothy E. Walsworth, Patrick Belmont, Mary M. Conner, Phaedra Budy

Ecology Center Publications

Understanding how populations respond to spatially heterogeneous habitat disturbance is as critical to conservation as it is challenging. Here, we present a new, free, and open‐source metapopulation model: Dynamic Habitat Disturbance and Ecological Resilience (DyHDER), which incorporates subpopulation habitat condition and connectivity into a population viability analysis framework. Modeling temporally dynamic and spatially explicit habitat disturbance of varying magnitude and duration is accomplished through the use of habitat time‐series data and a mechanistic approach to adjusting subpopulation vital rates. Additionally, DyHDER uses a probabilistic dispersal model driven by site‐specific habitat suitability, density dependence, and directionally dependent connectivity. In the first …

Salinity Reduces The Forage Quality Of Forage Kochia: A Halophytic Chenopodiaceae Shrub, Blair L. Waldron, Joseph K. Sagers, Michael D. Peel, Craig W. Rigby, Bruce G. Bugbee, Joseph E. Creech

Forage and Range Research Laboratory Publications

Forage kochia (Bassia prostrata [L.] A.J. Scott) is a perennial, halophytic Chenopodiaceae shrub adapted to semiarid rangelands and steppes. It is noted for its ability to produce edible forage in saline environments, but the effect of salinity on its nutritive value has not been determined. Therefore, this study evaluated the dose-response of increasing salinity on the forage quality of forage kochia and Gardner’s saltbush (Atriplex gardneri [Moq.] D. Dietr., a chenopod forage shrub indigenous to the United States). Individual plants were evaluated in hydroponics for 28 days at 0, 150, 300, and 600 mM NaCl. Salt from accumulated …

Contrasting Root System Structure And Belowground Interactions Between Black Spruce (Picea Mariana (Mill.) B.S.P) And Trembling Aspen (Populus Tremuloides Michx) In Boreal Mixedwoods Of Eastern Canada, Claudele Ghotsa Mekontchou, Daniel Houle, Yves Bergeron, Igor Drobyshev

Aspen Bibliography

This study explored the underground interactions between black spruce and trembling aspen in pure and mixed stands to understand how their soil resource use help these species coexist in the boreal mixedwoods of Western Quebec. We analyzed species-specific fine root foraging strategies (root biomass and root tissue density) along three soil layers (organic, top 0–15 cm, and bottom 15–30 cm mineral soil), using 180 soil cores. We collected cores in three sites, each containing three 20 × 50 m2 plots of pure spruce, pure aspen, and mixed spruce and aspen stands. Spruce had a shallow rooting, whereas aspen had a …

Ecological Response To Altered Rainfall Differs Across The Neotropics, Diane S. Srivastava, Régis Céréghino, M. Kurtis Trzcinski, A. Andrew M. Macdonald, Nicholas A. C. Marino, Dimaris Acosta Mercado, Céline Leroy, Bruno Corbara, Gustavo Q. Romero, Vinicius F. Farjalla, Ignacio M. Barberis, Olivier Dézerald, Edd Hammill, Trisha B. Atwood, Gustavo C. O. Piccoli, Et Al.

Ecology Center Publications

There is growing recognition that ecosystems may be more impacted by infrequent extreme climatic events than by changes in mean climatic conditions. This has led to calls for experiments that explore the sensitivity of ecosystems over broad ranges of climatic parameter space. However, because such response surface experiments have so far been limited in geographic and biological scope, it is not clear if differences between studies reflect geographic location or the ecosystem component considered. In this study, we manipulated rainfall entering tank bromeliads in seven sites across the Neotropics, and characterized the response of the aquatic ecosystem in terms of …

Organic Matter Is A Mixture Of Terrestrial, Autochthonous, And Wastewater Effluent In An Urban River, Julia E. Kelso, Michelle A. Baker

Ecology Center Publications

Terrestrially derived organic matter (OM) is known to dominate the OM pool in reference watersheds. Urban watersheds are known to receive large OM loads compared to reference watersheds, but the proportion of terrestrial, autochthonous, and anthropogenic (e.g., wastewater effluent) sources of OM in urban watersheds remains unknown. Organic matter was identified as a pollutant of concern in the Jordan River, an urban river in the Salt Lake Basin, U.S.A. Our objective was to identify autochthonous, terrestrial, and anthropogenic sources of three size-classes of OM to the Jordan River to inform OM reduction strategies within the watershed. Samples of coarse particulate …

Early Goose Arrival Increases Soil Nitrogen Availability More Than An Advancing Spring In Coastal Western Alaska, Ryan T. Choi, Karen H. Beard, Katharine C. Kelsey, A. Joshua Leffler, Joel A. Schmutz, Jeffrey M. Welker

Ecology Center Publications

An understudied aspect of climate change-induced phenological mismatch is its effect on ecosystem functioning, such as nitrogen (N) cycling. Migratory herbivore arrival time may alter N inputs and plant–herbivore feedbacks, whereas earlier springs are predicted to increase N cycling rates through warmer temperatures. However, the relative importance of these shifts in timing and how they interact to affect N cycling are largely unknown. We conducted a 3-year factorial experiment in coastal western Alaska that simulated different timings of Pacific black brant (Branta bernicla nigricans) arrival (3 weeks early, typical, 3 weeks late, or no-grazing) and the growing season …

Patterns Of Epiphytic Lichen Abundance On Aspen Stands In Proximity To Roads Of Varying Vehicular Traffic, D. Aragon, C. Castillo, J. Moffroid, G. Thomas

Aspen Bibliography

Although present in nearly any wild space with available moisture and on a wide variety of substrates, lichen, and its importance as a bioindicator for an ecosystem, is often overlooked. As air pollution becomes a greater concern for flora, fauna, and even humans, the story told by lichen growth becomes more useful as we try to make sense of the downstream effects of anthropogenic contributions to poor air quality. One such human-driven pollutant is the level of emissions that result from vehicular travel. The Jackson Hole area has experienced a large increase in vehicular traffic in the past five to …

Pando Clone Recovery: Repeat Photos 2014-2019, Mary O'Brien, Marc Coles-Ritchie

Aspen Bibliography

The world's largest known clone of aspen (Populus tremuloides), called the "Pando Clone" is located in the Fishlake National Forest in central Utah. For many decades, significant pressure from ungulate (deer and cattle) browsing has prevented growth of young aspen stems in to trees that would replace the mature trees as they die of natural causes. There has been concern that this impressive 104-acre Pando Clone could be lost altogether due to the excessive browsing of young aspen stems. In 2013, 16 acres of this clone were fenced to exclude all ungulates (deer and cattle) so that recovery …

The Times They Are A-Changin’, Terry A. Messmer

Human–Wildlife Interactions

This is the Letter from the Editor.

Can Farmers And Bats Co-Exist? Farmer Attitudes, Knowledge, And Experiences With Bats In Belize, Hannah G. Shapiro, Adam S. Willcox, Mallory Tate, Emma V. Willcox

Human–Wildlife Interactions

Bats (Chiroptera) are often viewed negatively by the public. Negative public perceptions of bats may hinder efforts to conserve declining populations. In Belize, the presence of vampire bats (Desmodus rotundus and Diphylla ecaudata) exacerbates the potential for conflicts with humans because of the increased rabies transmission risks. To mitigate these risks, the Belize government provides farmers with assistance to trap and remove vampire bats. In June 2018, we surveyed farmers (n = 44) in and adjacent to the Vaca Forest Reserve in Belize to learn more about their attitudes, knowledge, and experiences with bats. This information may …

Remote Sensing Applications For Abating Aircraft–Bird Strike Risks In Southeast Brazil, Natalia S. Novoselova, Alexey A. Novoselov, Arthur Macarrão, Guilherme Gallo-Ortiz, Wesley Rodrigues Silva

Human–Wildlife Interactions

The rising number of aircraft collisions with birds requires the development of appropriate mitigation measures to control their populations in the vicinity of airports. The black vulture (Coragyps atratus; vultures) is considered one of the most dangerous species for aviation in Brazil. To better understand the spatial distribution patterns of flying vultures and the risks they may pose to aviation, we studied natural and anthropogenic superficial factors and then numerically estimated and mapped the risk of collision with birds over the Airport Safety Area (ASA) for the Amarais Airport and Presidente Prudente Airport in the southeast part of …

Using Environmental Dna To Detect Estuarine Crocodiles, A Cryptic-Ambush Predator Of Humans, Alea Rose, Yusuke Fukuda, Hamish A. Campbell

Human–Wildlife Interactions

Negative human–wildlife interactions can be better managed by early detection of the wildlife species involved. However, many animals that pose a threat to humans are highly cryptic, and detecting their presence before the interaction occurs can be challenging. We describe a method whereby the presence of the estuarine crocodile (Crocodylus porosus), a cryptic and potentially dangerous predator of humans, was detected using traces of DNA shed into the water, known as environmental DNA (eDNA). The estuarine crocodile is present in waterways throughout southeast Asia and Oceania and has been responsible for >1,000 attacks upon humans in the past …

Use Of Roadside Deer Removal To Reduce Deer–Vehicle Collisions, John C. Kilgo, John I. Blake, Tracy E. Grazia, Andy Horcher, Michael Larsen, Thomas Mims, Stanley J. Zarnoch

Human–Wildlife Interactions

Identification of management tools to reduce the incidence of deer–vehicle collisions (DVCs) is important to improve motorist safety. Sharpshooting to reduce white-tailed deer (Odocoileus virginianus; deer) along roads has proven successful in urban situations but has not been evaluated in undeveloped areas. We used a before-after-control-impact (BACI) design to evaluate the use of sharpshooting to reduce DVCs along roads on the uninhabited U.S. Department of Energy’s Savannah River Site, South Carolina, USA, during 2011–2017. We removed 242 deer from 4 treatment roads during 2015 and 2016, with 2-year removal rates per road averaging 5.0 deer/km of road (range …

After Decades Of Suburban Deer Research And Management In The Eastern United States: Where Do We Go From Here?, Paul D. Curtis

Human–Wildlife Interactions

State wildlife agencies have regulatory authority and oversight over deer (Cervidae) management in the United States. However, increased urban sprawl and overabundant deer populations have created increased human–deer conflicts. Because of the growing controversy surrounding the use of traditional management practices such as regulated hunting in suburban areas in the eastern United States, managers are now using specialized tools and management approaches to reduce deer conflicts in urban areas. However, this has created new challenges as they try to meet the desires of diverse stakeholder groups. Although deer management programs in urban areas differ somewhat in every state, effective management …

Book Review: Saving Species On Private Lands: Unlocking Incentives To Conserve Wildlife And Their Habitats, Lorien Belton

Human–Wildlife Interactions

This is a book review of Saving Species on Private Lands: Unlocking Incentives to Conserve Wildlife and their Habitats.

Table Of Contents

Human–Wildlife Interactions

This is the table of contents.

Stone-Stacking As A Looming Threat To Rock-Dwelling Biodiversity, Ricardo Rocha, Paulo A. V. Borges, Pedro Cardoso, Mirza Dikari Kusrini, José Luis Martín-Esquivel, Dília Menezes, Mário Mota-Ferreira, Sara F. Nunes, Inês Órfão, Catarina Serra-Gonçalves, Manuela Sim-Sim, Pedro Sepúlveda, Dinarte Teixeira, Anna Traveset

Human–Wildlife Interactions

This letter to the editor describes the surge of “photo-friendly” stacks of stones as an emerging tourism-associated threat to rock-dwelling biodiversity.

New Associate Editors, Terry A. Messmer

Human–Wildlife Interactions

New associate editors are George Linz and Zachary Miller.

In The News, Jason Matthews, Joe N. Caudell

Human–Wildlife Interactions

Items in the news.