Ecology and Evolutionary Biology Commons^™

Ecoacoustic Methods For Multi-Taxa Animal Surveys In The Amazon, Leandro A. Do Nascimento

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Tropical regions host most of the biodiversity found on Earth, but these species-rich areas are constantly threatened by human development and other disturbances that put this diversity of life forms at risk. To avoid extirpations of animal and plant species, scientists and managers rely on accurate monitoring techniques to retrieve information about population trends. This task is not easy, especially in the tropics, where there is often a lack of personnel to conduct surveys, a lack of funding, and the areas are so extensive that many countries need to be involved in monitoring (e.g., Amazon biome). For this reason, scientists …

Evaluating The Effect Of The Removal Of Non-Native Trout In Two High Elevation Tributary Streams In The Intermountain West, Clint Brunson

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Native fish species such as Bonneville Cutthroat Trout (BCT) require cold, clear, well-connected streams for spawning and rearing as well as access to complimentary habitats. Increasing river temperatures and lower water flows may have allowed non-native Brown Trout (BNT) to migrate into higher elevation pristine streams. Additionally, anthropogenic actions such as stocking non-native Brown and Brook (BKT) and Rainbow Trout (RBT) for angling opportunities impact BCT. Invasion of these tributaries by non-native species may reduce or eliminate cutthroat trout by predation, competition, displacement, genetic suppression, and exclusion. A seven-fold increase in BNT numbers of 50 to 350 from 2017 to …

What Is The Storage Effect, Why Should It Occur In Cancers, And How Can It Inform Cancer Therapy?, Anna K. Miller, Joel S. Brown, David Basanta, Nancy Huntly

Ecology Center Publications

Intratumor heterogeneity is a feature of cancer that is associated with progression, treatment resistance, and recurrence. However, the mechanisms that allow diverse cancer cell lineages to coexist remain poorly understood. The storage effect is a coexistence mechanism that has been proposed to explain the diversity of a variety of ecological communities, including coral reef fish, plankton, and desert annual plants. Three ingredients are required for there to be a storage effect: (1) temporal variability in the environment, (2) buffered population growth, and (3) species-specific environmental responses. In this article, we argue that these conditions are observed in cancers and that …

Genomic Insights Into Speciation History And Local Adaptation Of An Alpine Aspen In The Qinghai–Tibet Plateau And Adjacent Highlands, Jia-Lang Li, Lin-Ling Zhong, Jing Wang, Tao Ma, Kang-Shan Mao, Lei Zhang

Aspen Bibliography

Natural selection serves as an important agent to drive and maintain interspecific divergence. Populus rotundifolia Griff. is an alpine aspen species that mainly occurs in the Qinghai–Tibet Plateau (QTP) and adjacent highlands, whereas its sister species, P. davidiana Dode, is distributed across southwest and central to northeast China in much lower altitude regions. In this study, we collected genome resequencing data of 53 P. rotundifolia and 42 P. davidiana individuals across their natural distribution regions. Our population genomic data suggest that the two species are well delimitated in the allopatric regions, but with hybrid zones in their adjacent region in …

Aspen Next Generation: Conversations From Southern Colorado And Northern New Mexico, Dan Binkley, Bill Romme

Aspen Bibliography

Aspen trees and forests are especially important in the Rocky Mountains. Aspens add beauty to landscapes, foster high diversity and productivity of understory plants, provide for the habitat needs of many species of animals, and moderate fire behavior. There is a perception that aspen trees and stands are not regenerating well in southern Colorado and northern New Mexico; cohorts of trees younger than a few decades are scarce, at least in some areas. The next generation of aspen in the southern Rockies will be influenced by land use decisions, including harvesting, fire policy and management, and browsing by livestock and …

Protecting Endangered Species In The Usa Requires Both Public And Private Land Conservation, Niall G. Clancy, John P. Draper, J. Marshall Wolf, Umarfarooq A. Abdulwahab, Maya Cassidy Pendleton, Soren Brothers, Janice Brahney, Jennifer M. Weathered, Edd Hammill, Trisha B. Atwood

Ecology Center Publications

Crucial to the successful conservation of endangered species is the overlap of their ranges with protected areas. We analyzed protected areas in the continental USA to assess the extent to which they covered the ranges of endangered tetrapods. We show that in 80% of ecoregions, protected areas offer equal (25%) or worse (55%) protection for species than if their locations were chosen at random. Additionally, we demonstrate that it is possible to achieve sufficient protection for 100% of the USA’s endangered tetrapods through targeted protection of undeveloped public and private lands. Our results highlight that the USA is likely to …

Towards More Realistic Estimates Of Dom Decay In Streams: Incubation Methods, Light, And Non-Additive Effects, Julia E. Kelso, Emma J. Rosi, Michelle A. Baker

Ecology Center Publications

Dissolved organic matter (DOM) is the largest pool of organic matter in aquatic ecosystems and is a primary substrate for microbial respiration in streams. However, understanding the controls on DOM processing by microbes remains limited, and DOM decay rates remain largely unconstrained. Many DOM decay rates are quantified with bioassays in dark bottles, which may underestimate DOM decay in streams because these bioassays do not include a benthic zone and do not account for abiotic factors of DOM loss, such as photodegradation and volatilization. We measured decay of labile and semi-labile DOM over 3 d in experimental streams and bottle …

Western Bumble Bee: Declines In The Continental United States And Range-Wide Information Gaps, Tabitha A. Graves, William M. Janousek, Sarah M. Gaulke, Amy C. Nicholas, Douglas A. Keinath, Christine M. Bell, Syd Cannings, Richard G. Hatfield, Jennifer M. Heron, Jonathan B. Koch, Helen L. Loffland, Leif L. Richardson, Ashley T. Rohde, Jessica Rykken, James P. Strange, Et Al.

Wildland Resources Student Research

In recent decades, many bumble bee species have declined due to changes in habitat, climate, and pressures from pathogens, pesticides, and introduced species. The western bumble bee (Bombus occidentalis), once common throughout western North America, is a species of concern and will be considered for listing by the U.S. Fish and Wildlife Service (USFWS) under the Endangered Species Act (ESA). We attempt to improve alignment of data collection and research with USFWS needs to consider redundancy, resiliency, and representation in the upcoming species status assessment. We reviewed existing data and literature on B. occidentalis, highlighting information gaps …

Compensatory Recruitment, Dynamic Habitat, And Selective Gear Present Challenges To Large-Scale Invasive Species Control, Timothy E. Walsworth, Kevin Landom, Jereme Gaeta

Ecology Center Publications

Control of long‐established invasive species to aid threatened native species presents major logistic and economic challenges. Invasive common carp (Cyprinus carpio ) recently accounted for over 90% of the fish biomass in Utah Lake (Utah, USA), driving many undesired changes to ecosystem structure. Carp control efforts have removed >12,000 tons of carp from the system over 10 yr. However, the impact of recent removal efforts on carp population structure and dynamics remains unclear. We develop an integrated age‐structured population model incorporating carp harvest data with independent standardized monitoring data to evaluate population‐level consequences of the removal effort and evaluate …

Space Use And Relative Habitat Selection For Immature Green Turtles Within A Caribbean Marine Protected Area, Lucas P. Griffin, Brian J. Smith, Michael S. Cherkiss, Andrew G. Crowder, Clayton G. Pollock, Zandy Hillis-Starr, Andy J. Danylchuk, Kristen M. Hart

Wildland Resources Student Research

Background

A better understanding of sea turtle spatial ecology is critical for the continued conservation of imperiled sea turtles and their habitats. For resource managers to develop the most effective conservation strategies, it is especially important to examine how turtles use and select for habitats within their developmental foraging grounds. Here, we examine the space use and relative habitat selection of immature green turtles (Chelonia mydas) using acoustic telemetry within the marine protected area, Buck Island Reef National Monument (BIRNM), St. Croix, United States Virgin Islands.

Results

Space use by turtles was concentrated on the southern side of …

Extreme Rainfall Events Alter The Trophic Structure In Bromeliad Tanks Across The Neotropics, Gustavo Q. Romero, Nicholas A. C. Marino, A. Andrew M. Macdonald, Régis Céréghino, M. Kurtis Trzcinski, Dimaris Acosta Mercado, Céline Leroy, Bruno Corbara, Vinicius F. Farjalla, Ignacio M. Barberis, Olivier Dézerald, Edd Hammill, Trisha B. Atwood, Gustavo C. O. Piccoli, Fabiola Ospina Bautista, Et Al.

Ecology Center Publications

Changes in global and regional precipitation regimes are among the most pervasive components of climate change. Intensification of rainfall cycles, ranging from frequent downpours to severe droughts, could cause widespread, but largely unknown, alterations to trophic structure and ecosystem function. We conducted multi-site coordinated experiments to show how variation in the quantity and evenness of rainfall modulates trophic structure in 210 natural freshwater microcosms (tank bromeliads) across Central and South America (18°N to 29°S). The biomass of smaller organisms (detritivores) was higher under more stable hydrological conditions. Conversely, the biomass of predators was highest when rainfall was uneven, resulting in …

Investigating The Dynamics Of Elk Population Size And Body Mass In A Seasonal Environment Using A Mechanistic Integral Projection Model, Shelly Lachish, Ellen E. Brandell, Meggan E. Craft, Andrew P. Dobson, Peter J. Hudson, Daniel R. Macnulty, Tim Coulson

Wildland Resources Faculty Publications

Environmentally mediated changes in body size often underlie population responses to environmental change, yet this is not a universal phenomenon. Understanding when phenotypic change underlies population responses to environmental change is important for obtaining insights and robust predictions of population dynamics in a changing world. We develop a dynamic integral projection model that mechanistically links environmental conditions to demographic rates and phenotypic traits (body size) via changes in resource availability and individual energetics. We apply the model to the northern Yellowstone elk population and explore population responses to changing patterns of seasonality, incorporating the interdependence of growth, demography, and density-dependent …

Long-Term Soil Productivity Study: 25-Year Vegetation Response To Varying Degrees Of Disturbance In Aspen-Dominated Forest Spanning The Upper Lake States, Miranda T. Curzon, Brian J. Palik, Anthony W. D'Amato, Julia Schwager

Aspen Bibliography

Installations of the Long-Term Soil Productivity Study were established in northern Minnesota and Michigan at the Chippewa, Ottawa, and Huron-Manistee National Forests (NFs) in the early 1990s and have since provided a wealth of data for assessing the response of aspen-dominated forest ecosystems to varying levels of organic matter removal and soil compaction. An assessment of 25-year standing woody biomass indicates that neither whole-tree harvest nor whole-tree harvest combined with forest floor removal reduced forest productivity on silt-loam soils compared with conventional, stem-only harvest; however, moderate and heavy compaction did negatively impact aspen biomass and stem densities. In contrast, whole-tree …

Analysis Of Movement Recursions To Detect Reproductive Events And Estimate Their Fate In Central Place Foragers, Simona Picardi, Brian J. Smith, Matthew E. Boone, Peter C. Frederick, Jacopo G. Cecere, Diego Rubolini, Lorenzo Serra, Simone Pirrello, Rena R. Borkhataria, Mathieu Basille

Ecology Center Publications

Background

Recursive movement patterns have been used to detect behavioral structure within individual movement trajectories in the context of foraging ecology, home-ranging behavior, and predator avoidance. Some animals exhibit movement recursions to locations that are tied to reproductive functions, including nests and dens; while existing literature recognizes that, no method is currently available to explicitly target different types of revisited locations. Moreover, the temporal persistence of recursive movements to a breeding location can carry information regarding the fate of breeding attempts, but it has never been used as a metric to quantify recursive movement patterns. Here, we introduce a method …

Migratory Behavior And Winter Geography Drive Differential Range Shifts Of Eastern Birds In Response To Recent Climate Change, Clark S. Rushing, J. Andrew Royle, David J. Ziolkowski Jr, Keith L. Pardieck

Ecology Center Publications

Over the past half century, migratory birds in North America have shown divergent population trends relative to resident species, with the former declining rapidly and the latter increasing. The role that climate change has played in these observed trends is not well understood, despite significant warming over this period. We used 43 y of monitoring data to fit dynamic species distribution models and quantify the rate of latitudinal range shifts in 32 species of birds native to eastern North America. Since the early 1970s, species that remain in North America throughout the year, including both resident and migratory species, appear …

Random Encounter And Staying Time Model Testing With Human Volunteers, Laura Garland, Eric Neilson, Tal Avgar, Erin Bayne, Stan Boutin

Ecology Center Publications

Ecology and management programs designed to track population trends over time increasingly are using passive monitoring methods to estimate terrestrial mammal densities. Researchers use motion‐sensing cameras in mammal studies because they are cost‐effective and advances in statistical methods incorporate motion‐sensing camera data to estimate mammal densities. Density estimation involving unmarked individuals, however, remains challenging and empirical tests of statistical models are relatively rare. We tested the random encounter and staying time model (REST), a new means of estimating the density of an unmarked population, using human volunteers and simulated camera surveys. The REST method produced unbiased estimates of density, regardless …

Linking Population Dynamics To Ecosystems: Identifying The Drivers Of Plant Productivity To Improve Rangeland Management., Robert Shriver

Funded Research Records

No abstract provided.

Global Co2 Emissions From Dry Inland Waters Share Common Drivers Across Ecosystems, P. S. Keller, N. Catalán, D. Von Schiller, H. -P. Grossart, M. Koschorreck, B. Obrador, M. A. Frassl, N. Karakaya, N. Barros, J. A. Howitt, C. Mendoza-Lera, A. Pastor, G. Flaim, R. Aben, T. Riis, M. I. Arce, G. Onandia, J. R. Paranaíba, A. Linkhorst, R. Del Campo, A. M. Amado, S. Cauvy-Fraunié, Soren Brothers, Et Al.

Ecology Center Publications

Many inland waters exhibit complete or partial desiccation, or have vanished due to global change, exposing sediments to the atmosphere. Yet, data on carbon dioxide (CO₂) emissions from these sediments are too scarce to upscale emissions for global estimates or to understand their fundamental drivers. Here, we present the results of a global survey covering 196 dry inland waters across diverse ecosystem types and climate zones. We show that their CO₂ emissions share fundamental drivers and constitute a substantial fraction of the carbon cycled by inland waters. CO₂ emissions were consistent across ecosystem types and climate …

An Evaluation Of Arthropod Assemblages In Great Salt Lake Wetland Habitats: Differences Between Native And Invasive Vegetation And Implications For Restoration, Emily E. Leonard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wetlands provide important habitat for various birds. Invasive plants can disrupt wetland food webs by altering the arthropod assemblages (invertebrate animals such as spiders, mites, insects, centipedes, and millipedes) on which these birds rely. However, differences between the wetland arthropods found in invasive vs. native vegetation are poorly defined. Wetlands are often managed for the creation of bird habitat through invasive species removal and native plant revegetation, yet few studies have examined the effects of these restoration methods on arthropod bird food sources. Phragmites australis (common reed), is an aggressive grass species in wetlands surrounding the Great Salt Lake, Utah, …

Forest Grouse Ecology And Management In The Bear River Range Northern Utah, Skyler Y. Farnsworth

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To better manage dusky grouse (Dendragapus obscurus) and ruffed grouse (Bonasa umbellus), hereafter forest grouse, managers require better information on forest grouse population status and habitat selection. To address this need, from 2015-2017, I conducted research on a sympatric populations inhabiting the Bear River Range of northern Utah to develop a breeding survey protocol, assess habitat selection, evaluate dusky grouse response to livestock grazing, and determine hunter harvest rates.

The breeding census protocol that I developed compared listening intervals with and without electronic playback calls at designated survey stop locations. Using digital mapping software, I plotted …

Recent Hybrids Recapitulate Ancient Hybrid Outcomes, Samridhi Chaturvedi, Lauren K. Lucas, C. Alex Buerkle, James A. Fordyce, Matthew L. Forister, Chris C. Nice, Zachariah Gompert

Ecology Center Publications

Genomic outcomes of hybridization depend on selection and recombination in hybrids. Whether these processes have similar effects on hybrid genome composition in contemporary hybrid zones versus ancient hybrid lineages is unknown. Here we show that patterns of introgression in a contemporary hybrid zone in Lycaeides butterflies predict patterns of ancestry in geographically adjacent, older hybrid populations. We find a particularly striking lack of ancestry from one of the hybridizing taxa, Lycaeides melissa, on the Z chromosome in both the old and contemporary hybrids. The same pattern of reduced L. melissa ancestry on the Z chromosome is seen in two …

Interspecific Differences In Stressor Tolerance Drive Community-Level Changes In A Small Aquatic Ecosystem, Jennifer M. Weathered

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The global human population is expected to reach 9.8 billion by 2050 and an increase in food yield will be needed to provide for the future generations. Insects are among the biggest threats to food production and are therefore the subject of intense chemical control through the application of pesticides. The ability of insects to evolve resistance to pesticides after repeated use has been documented. However, how evolved responses affect individuals’ behaviors, their interactions with others, and how these factors impact overall patterns in distribution remains relatively unexplored in the bromeliad.

The aquatic insect communities housed in water-holding tropical plants …

The Utility Of Environmental Dna And Species Distribution Models In Assessing The Habitat Requirements Of Twelve Fish Species In Alaskan North Slope Rivers, James B. Eddings

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Subsistence fishing is a vital component of Alaska’s North Slope borough economy and culture that is being threatened by human disturbance. These threats mean the fish must be protected, but the size of the region makes conservation planning difficult. Fortunately, advances in species distribution models (SDMs), environmental DNA (eDNA), and remote sensing technologies provide potential to better understand species’ needs and guide management. The objectives of my study were to: (1) map the current habitat suitability for twelve fish species, occurring in Alaska’s North Slope, (2) determine if SDMs based on eDNA data performed similarly to, or improved, models based …

Disease Ecology And Adaptive Management Of Brucellosis In Greater Yellowstone Elk, Gavin G. Cotterill

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Brucellosis is a bacterial infection that primarily affects livestock and can also be transmitted to humans. In the Greater Yellowstone Ecosystem (GYE), elk (Cervus canadensis) and bison (Bison bison) are habitual carriers of Brucella abortus, which arrived to the region with cattle over a century ago. The disease was eliminated from cattle in the United States through widespread control efforts, but is now periodically transmitted back to cattle on open rangelands where they can come into contact with fetal tissues and fluids from disease-induced abortions that occur among elk during the late winter and spring. …

An Evaluation Of Management Options For The Clover Root Curculio (Sitona Hispidulus), A Pest Of Alfalfa (Medicago Sativa) In The Intermountain West, Kaitlin A. Rim

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The clover root curculio (CRC) is an important forage pest throughout North America. Extensive larval feeding on host roots has been associated with reduced stand establishment, disruption of nutrient and water uptake, increased secondary plant pathogen infection, decreased winter plant survival, and reductions in forage quality and yield. Due to the hidden nature of larvae in the soil, CRC is often overlooked and integrated pest management programs are limited as there is a lack of management options. First, I surveyed northern Utah alfalfa for CRC natural enemies, particularly insect-attacking nematodes and fungi (entomopathogens) that could be used in biological control …

Do Didymosphenia Geminata Blooms Affect Fishes In The Kootenai River Basin?, Niall G. Clancy

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Didymosphenia geminata (Didymo) is a nuisance algae that can cover entire streambeds under certain environmental conditions. Numerous studies have shown that it changes the composition of stream invertebrates. Fishes in many headwaters are known to feed almost exclusively on invertebrates. Thus, there is concern changes to the amount or type of invertebrates caused by Didymo blooms will impact fishes such as trout, charr, and sculpin. In the Kootenai River basin of Montana and British Columbia, we examined stream invertebrates and fish diets, condition, and growth across 25 streams during the summers of 2018 and 2019. The severity of Didymo blooms …

Patterns Of Microbial Diversity And Community Composition In Slot Canyons, Rock Pools, And Other Ephemeral And Perennial Aquatic Habitats, Marley Madsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Microbes are the most diverse life forms on the planet and perform many impor-tant ecological functions. However, despite the abundance, diversity, and ecological importance of microbes they are often overlooked and understudied in many natural systems, including freshwater habitats. This thesis details the first ever investigation of the microbial diversity and community composition within fresh water rock pools and slot canyons of the Colorado Plateau, Utah. The purpose of the study was to determine the relative importance of various microbial community assembly processes. This thesis also includes a meta-analysis of the microbial alpha diversity in other perennial and ephemeral aquatic …

Forage Inventory And Modeling In Uintah And Ouray Reservation Rangelands, Scott N. Zimmer

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Uintah and Ouray Reservation in northeastern Utah has not been widely studied, and access to non-tribal members is highly restricted. We sampled vegetation to summarize condition in 300,000 acres of unsurveyed Reservation lands in 2017-2018, combining these data with data collected by the Bureau of Indian Affairs from 2010-2015 to complete an initial rangeland vegetation inventory of the Reservation. This survey was designed to inform management of the area by determining cattle stocking rates and overall ecological condition across the Reservation. Both the density of forage available to cattle and appropriate cattle stocking rates vary greatly throughout management units …

North Dakota Greater Sage-Grouse (Centrocercus Urophasianus) Recovery Project: Using Translocation To Prevent State-Wide Extirpation And Develop Rangewide Protocols, Kade D. Lazenby

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse (Centrocurcus urophasianus; hereafter sage-grouse) are the largest grouse species in North America. Sage-grouse occupy 11 western states, extending into North Dakota. North Dakota sage-grouse population is part of the Great Plains Management Zone. Conservation of sage-grouse has been on the forefront of conservation management 1990s. In 2015 the USFWS declared sage-grouse were not warranted for listing based on significant management efforts. Translocations of sage-grouse to prevent populations from extirpation are an example of these efforts.

Translocations have been described as movement and release of animals into a novel environment. There have been more than 7200 sage-grouse …

Human-Wildlife Interactions In Bryce Canyon National Park, Chad H. Wildermuth

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Public lands such as National Parks protect some of America’s most spectacular and iconic natural, cultural, and historic landscapes. These lands are managed with a goal of preserving their unique features for the recreational use of the public. Therefore, it is important to understand the effects, if any, that public visitation has on these natural systems. This study investigated human-wildlife interactions in Bryce Canyon National Park (BRCA), Utah in order to better understand factors that lead to human-wildlife conflicts and how the attitudes and perceptions of visitors affect their actions towards wildlife.

Observations of human-wildlife interactions were observed and measured …