Ecology and Evolutionary Biology Commons^™

Exploring The Population Dynamics Of Wintering Bald Eagles Through Long-Term Data, Julie Beckstead, Alexandra N. Lagasse, Scott R. Robinson

Biology Faculty Scholarship

THE ECOLOGICAL QUESTION

How does a bald eagle population change over time at a winter migratory stopover and which factors influence its abundance?

ECOLOGICAL CONTENT

Bald eagle biology, conservation biology, endangered species, population ecology, and migration ecology (stopover)

WHAT STUDENTS DO

Guided Approach: Students will generate questions about bald eagle numbers influenced by weather and food availability. Students will then use graphing software (JMP or Excel) to compile the data in a graphical form to answer their questions.

Open-ended Approach: Students will generate their own hypotheses of interest from the larger bald eagle data set. This approach is encouraged for …

Biogeographic Consequences Of Historic And Contemporary Climate Change In Boreal Forest Birds, Joel Ralston

Legacy Theses & Dissertations (2009 - 2024)

In this dissertation, I combine ecological niche models (ENMs), which can be extrapolated through time to predict historic and future changes in species distributions, with mitochondrial and nuclear genetic markers to study the biogeographic consequences of historic and contemporary climate change on boreal forest birds, and in particular Blackpoll Warbler.

Floristic And Environmental Characteristics Of Sub-Boreal Peatlands Of Minnesota And Western Wisconsin, Kevin Douglas Clement

All Graduate Theses, Dissertations, and Other Capstone Projects

Peatland communities in the sub-boreal region of Minnesota and western Wisconsin were characterized by floristic composition, structure and environmental characteristics to determine the natural variation among peatland communities in the region and their shared associations with the boreal and temperate peatlands of North America. Floristic classification revealed five, distinct peatland community types, identified as Sphagnum Bogs, Herbaceous Fens, Forested Fens, Rich/Calcareous Fens and Phalaris anrundinacea dominated peatlands. Differences among sub-boreal peatlands largely reflected changes in the significant indicator and dominant plant species identified, which were found to exhibit high fidelities to a particular peatland community type. Floristic variations among sub-boreal …

Variation, Systematics, And Relationships Of The Leptodactylus Bolivianus Complex (Amphibia: Anura: Leptodactylidae), W. Ronald Heyer, Rafael O. De Sá

Biology Faculty Publications

Heyer, W. Ronald, and Rafael O. de Sá. Variation, Systematics, and Relationships of the Leptodactylus bolivianus Complex (Amphibia: Anura: Leptodactylidae). Smithsonian Contributions to Zoology, number 635, viii + 58 pages, 21 figures, 20 tables, 2011.—The Leptodactylus bolivianuscomplex has been considered to consist of one or two species, L. bolivianus alone or L. bolivianus and L. insularum. Detailed morphological analyses were undertaken to evaluate variation in the complex, which ranges from Costa Rica through Panama, across northern South America in the river valleys draining to the Caribbean, and throughout much of the Amazon basin with southern limits in Bolivia. Members of …

The Conservation And Ecology Of Carnivorous Plants, David Jennings

USF Tampa Graduate Theses and Dissertations

As discussed in Chapter 1, although our understanding of the ecology and evolution of carnivorous plants has greatly improved in recent years, many fundamental questions remain unanswered. Unfortunately, at the present time, many carnivorous plants are increasingly threatened by anthropogenic activities. Indeed, over half of the carnivorous plant species assessed by the International Union for the Conservation of Nature (IUCN) are listed as `threatened', but the threats to carnivorous plants have not previously been quantified. In Chapter 2, I quantified the conservation threats to carnivorous plant taxa worldwide by searching peer-reviewed literature, and found data on the threats to 48 …

A Post-Restoration Assessment Of The Fishes And Macroinvertebrates Of Mill Branch, Knox County, Kentucky, With Emphasis On The Blackside Dace (Chrosomus Cumberlandensis), Dwayne Kevin Merrill

Online Theses and Dissertations

The first stream habitat restoration project for the federally threatened blackside dace, Chrosomus cumberlandensis (Starnes and Starnes), was initiated in fall 2005 on Mill Branch, a small headwater stream located in the Upper Cumberland River basin, Knox County, Kentucky. The lower 700 meters of Mill Branch were restored through construction of a new, stable channel with specially designed habitat features for blackside dace. In August 2009, the newly restored channel was connected to the mainstem and the old channel was eliminated. A post-restoration survey was conducted on the fishes (with emphasis on the blackside dace) and benthic macroinvertebrate communities, between …

Land Snail Species Diversity And Composition Between Different Forest Disturbance Regimes In Central And Eastern Kentucky Forests, Daniel Douglas

Online Theses and Dissertations

Land snails are cornerstone organisms that contribute to properly functioning ecosystems. However, habitat loss and destruction have led to these organisms being one of the most imperiled groups on the planet. Due to their relatively sedentary nature, land snails can be susceptible to anthropogenic disturbance and habitat fragmentation. Because of this, old-growth forests have the potential for being premiere habitat for these organisms, and snails have the potential to be good indicators of old-growth habitats. This study compared land snail species diversity and community composition in old-growth and second-growth forests in the Inner Bluegrass, Cumberland Plateau, and Pine Mountain ecoregions …

Amphibian Community Similarity Between Natural Ponds And Constructed Ponds Of Multiple Types In Daniel Boone National Forest, Kentucky, Robert Daniel Denton

Online Theses and Dissertations

Amphibians are in a worldwide decline. Among the many causes for amphibian declines, habitat loss and alteration remains one of the most significant. A lack of federal protection for isolated wetlands that provide habitat for unique species has resulted in the loss of breeding habitat and unregulated mitigation practices. Ponds built for mitigation purposes often do not replicate the lost ponds in structure or ecological processes. A lack of general monitoring has produced a void in knowledge of what long-term role constructed ponds play in shaping amphibian communities. My objective was to compare amphibian communities of natural ponds and multiple …

Some Laelapine Mites (Acari: Laelapidae) Ectoparasitic On Small Mammals In The Galapagos Islands, Including A New Species Of Gigantolaelaps From Aegialomys Galapagoensis, Donald D. Gettinger, Fernanda Martins-Hatano, Scott Lyell Gardner

Scott L. Gardner Publications

A collection of laelapine mites from small mammals in the Galapagos Islands are identified and their host distributions reviewed. Two species of native rodents, Aegialomys galapagoensis and Nesoryzomys narboroughii, were infested only with species typical of Neotropical oryzomyine rodents; Rattus rattus was infested with Laelaps nuttalli, a host-specific ectoparasite to Old World Rattus. A synopsis of Gigantolaelaps Fonseca is provided and we describe a new laelapine mite, Gigantolaelaps aegialomys n. sp., from the pelage of the rodent A. galapagoensis on Santa Fe Island. The new species has strong morphological affinities with a subgroup of Gigantolaelaps associated …

Natural Variation In Life History And Aging Phenotypes Is Associated With Mitochondrial Dna Deletion Frequency In Caenorhabditis Briggsae, Suzanne Estes, Anna Luella Coleman-Hulbert, Kiley Ann Hicks, Gene De Haan, Sarah R. Martha, Jeremiah B. Knapp, Samson William Smith, Kevin C. Stein, Dee R. Denver

Biology Faculty Publications and Presentations

Background: Mutations that impair mitochondrial functioning are associated with a variety of metabolic and age-related disorders. A barrier to rigorous tests of the role of mitochondrial dysfunction in aging processes has been the lack of model systems with relevant, naturally occurring mitochondrial genetic variation. Toward the goal of developing such a model system, we studied natural variation in life history, metabolic, and aging phenotypes as it relates to levels of a naturally-occurring heteroplasmic mitochondrial ND5 deletion recently discovered to segregate among wild populations of the soil nematode, Caenorhabditis briggsae. The normal product of ND5 is a central component of the …

Evaluating The Effects Of Beach Nourishment On Loggerhead Sea Turtle (Caretta Caretta) Nesting In Pinellas County, Florida, Corey R. Leonard Ozan

USF Tampa Graduate Theses and Dissertations

The health of Florida's beaches are vital to the survival of loggerhead sea turtles (Caretta caretta), as nearly half of the world's loggerheads nest on the states beaches. Many of the beaches utilized by the turtles have undergone nourishment projects in hopes of combating erosion of the shoreline, protecting beachfront property, and creating more suitable beaches for tourism. Although it is argued that beach nourishment benefits sea turtles by providing more nesting habitat, the effects of the Pinellas County nourishment projects on loggerhead nesting are unknown. Beach nourishment can alter the compaction, moisture content, and temperature of the sand, all …

Simulation Of Spatial Movement That Potentially Maximizes Assessment, Presence, And Defence In Territorial And Home-Ranging Animals, With Special Reference To Territorial Sex-Changing Fishes, Thomas R. Brown, Joshua Jowers, Marvin M.F. Lutnesky

Biology Faculty Publications (Archived)

Question: Are there territory sizes, shapes, and movement rules that animals can use to maximize their presence for territorial and reproductive purposes? Features of the model: Individual-oriented simulation model of a focal male, a female (his mate), and six other males in adjacent territories. Simulation variables were territory size and aspect (length-to-width ratio), velocity, step size, and potential movement angle. Each simulation represented 10,000 s of real time, and simulations were repeated until convergence on maximum mean encounter rates (MER) of a focal male with the female and other males was reached. Ranges of variables: Simulations consisted of three velocities …

Range Extension For The Dismal Swamp Southern Bog Lemming, Synaptomys Cooperi Helaletes, In Eastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The distribution of the Dismal Swamp Southern Bog Lemming is extended to include three counties west of the Dismal Swamp in southeastern Virginia, long considered its only location in the state. Evidence of lemmings was detected at 10 of 27 survey sites, and confirmed by trapping at three of five sites, all dominated by herbaceous vegetation.

Physiology And Biochemistry Of The Tropical Seagrass Thalassia Testudinum In Response To Hypersalinity Stress And Labyrinthula Sp. Infection, Stacey Marie Trevathan-Tackett

UNF Graduate Theses and Dissertations

Seagrass meadows are essential to coastal ecosystems and have experienced declines in abundance due to a series of environmental stressors including elevated salinity and incidence of disease caused by the pathogen Labyrinthula sp. This thesis evaluated the dynamics between T. testudinum and Labyrinthula concerning the impacts of short term elevated salinity stress on the early stages of infection in Thalassia testudinum (Chapter 2) as well as the presence of anti-labyrinthulid secondary metabolites produced by the tropical seagrass (Chapter 3). The results showed that short term exposure to hypersalinity alters some cellular processes but does not necessarily lead to an immediate …

Phylogeography Of Northern Populations Of The Black-Tailed Rattlesnake (Crotalus Molossus Baird And Girard, 1853) With The Revalidation Of C. Ornatus Hallowell, 1854, Christopher Anderson

Open Access Theses & Dissertations

The black-tailed rattlesnake (Crotalus molossus Baird and Girard, 1853) is a wide-ranging species complex with representatives from the southwestern United States through the highlands of central and southern Mexico. The systematics of this group has received little attention and in the past six decades only two taxonomic revisions have been proposed (the transfer of C. basiliscus oaxacus to C. molossus and the elevation of C. m. estebanensis to full species). However, a recent revision of the Neotropical rattlesnakes (C. durissus and C. simus) recovered a polyphyletic C. molossus. Sequenced data were obtained from three mitochondrial genes …

The Ecology Of Disturbances And Global Change In The Montane Grasslands Of The Nilgiris, South India, Madhusudan P. Srinivasan

University of Kentucky Doctoral Dissertations

Biodiversity rich regions worldwide face threats from various global change agents. This research quantifies environmental influences on vegetation, and the impacts of exotic woody plant invasion and anthropogenic nitrogen (N) deposition in a global biodiversity hotspot. The study was conducted in the montane grasslands of the Nilgiris, Western Ghats, and outlines potential management options for this region. Specifically, I examined (1) the role of environmental factors in influencing native plant distribution and ecosystem properties, (2) the status and impact of exotic shrub (Scotch broom, henceforth broom) invasion, (3) the role of disturbances in the success of broom, (4) the role …

Geomorphological Potential Of Coelacanth Habitat Across Mozambique-Tanzania Border, N. Nyandwi

Tanzania Journal of Science

The coelacanth is a new fish in Tanzania. It was first discovered in September 2003 after it was spotted by a tourist in a fish market. It was caught by fishermen in the deep waters off Songo Mnara Island offshore of Kilwa Masoko Town in Southern Tanzania. The find potentially added southern Tanzania to the list of known coelacanth areas of the southern Western Indian Ocean Region. Observed current conditions indicate that the waters are swept by strong (2 m/sec) northward flowing current. This suggests that there must exist hideouts for the fish, such as caves in canyons and overhangs. …

The Status Of Dwarfed Populations Of Short-Horned Lizards (Phrynosoma Hernandesi) And Great Plains Toads (Anaxyrus Cognatus) In The San Luis Valley, Colorado, Megan E. Lahti

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The San Luis Valley is a large valley formation in Colorado surrounded on either side by mountain ranges exceeding 4,267 m. Within the Valley, two of the 14 amphibian and reptile species are dwarfed: the short-horned lizard (Phrynosoma hernandesi) and the Great Plains toad (Anaxyrus cognatus). Since its initial reporting in 1968 and confirmation in 1981, no research further investigating this dwarfism has been conducted. I collected morphological measurements to determine the extent and patterns of dwarfism of both species. I then investigated the genetics of both species using mitochondrial DNA to determine whether they are …

Description Of The Tadpole Of Proceratophrys Renalis (Miranda-Ribeiro, 1920) (Anura: Cycloramphidae), Filipe Augusto C. Do Nascimento, Barnagleison S. Lisboa, Gabriel O. Skuk, Rafael O. De Sá

Biology Faculty Publications

The tadpole of Proceratophrys renalis is described based on specimens from Maceió, State of Alagoas, northeastern Brazil. At stage 35 the body is slightly dorso-ventrally depressed, ovoid in lateral, dorsal, and ventral views. Oral disc is ventral with lateral emarginations, surrounded by a single row of marginal papillae with a large gap on the upper labium. Labial tooth row formula is 2(2)/3(1 ). The analysis of internal oral anatomy revealed two possible characters that readily distinguish P. renalis from P. boiei, supporting the recent resurrection of P. renal is. Comparisons with available descriptions of the larvae for other species in …

Geological And Ichthyological Investigations Into Palaeodrainage Hypothesis For The Tennessee River, Andrea Karen Persons

Dissertations

The course of the ancestral Tennessee River has been debated in both the geological and biological literature for over 100 years. Several of the proposed courses for the ancestral Tennessee place its course across the state of Mississippi. Geochemical analysis of sedimentary rocks in the Pascagoula River basin supports these hypotheses suggesting that the rocks in the Pascagoula basin were derived from the Highland Rim of Tennessee and northern Alabama, while geochemical analysis of rocks from the Pearl River basin point to deposition from a mixture of sources including the ancestral Mississippi River and perhaps the ancestral Tennessee. To delve …

Micrornas Reveal The Interrelationships Of Hagfish, Lampreys, And Gnathostomes And The Nature Of The Ancestral Vertebrate, Alysha M. Heimberg, Richard Cowper-Sal{Middle Dot}Lari, Marie Semon, Philip C. J. Donoghue, Kevin J. Peterson

Dartmouth Scholarship

Hagfish and lampreys are the only living representatives of the jawless vertebrates (agnathans), and compared with jawed vertebrates (gnathostomes), they provide insight into the embryology, genomics, and body plan of the ancestral vertebrate. However, this insight has been obscured by controversy over their interrelationships. Morphological cladistic analyses have identified lampreys and gnathostomes as closest relatives, whereas molecular phylogenetic studies recover a monophyletic Cyclostomata (hagfish and lampreys as closest relatives). Here, we show through deep sequencing of small RNA libraries, coupled with genomic surveys, that Cyclostomata is monophyletic: hagfish and lampreys share 4 unique microRNA families, 15 unique paralogues of more …

Cortical Representation Of Lateralized Grasping In Chimpanzees (Pan Troglodytes): A Combined Mri And Pet Study, William D. Hopkins, Jared P. Taglialatela, Jamie L. Russell, Talia M. Nir, Jennifer Schaeffer

Faculty Articles

Functional imaging studies in humans have localized the motor-hand region to a neuroanatomical landmark call the KNOB within the precentral gyrus. It has also been reported that the KNOB is larger in the hemisphere contralateral to an individual's preferred hand, and therefore may represent the neural substrate for handedness. The KNOB has also been neuronatomically described in chimpanzees and other great apes and is similarly associated with handedness. However, whether the chimpanzee KNOB represents the hand region is unclear from the extant literature. Here, we used PET to quantify neural metabolic activity in chimpanzees when engaged in unilateral reach-and-grasping responses …

Osteology, Natural History Notes, And Phylogenetic Relationships Of The Poorly Known Caribbean Frog Leptodactylus Nesiotus (Anura, Leptodactylidae), María Laura Ponssa, Michael J. Jowers, Rafael O. De Sá

Biology Faculty Publications

The Leptodactylus melanonotus group consists of 15 species, but references to skeletal characters are available for only three species: L. leptodactyloides, L. melanonotus, and L. diedrus. Leptodactylus nesiotus is a member of the melanonotus group known only from the type locality, Bonasse swamp, on the Southwestern peninsula of Trinidad, Trinidad and Tobago. This species has been categorized as vulnerable given its restricted distribution. Herein, we report the adult osteology of L. nesiotus, the skeletal characters are compared with the available data from other Leptodactylus species. A phylogenetic analysis recovers a paraphyletic L. melanonotus group relative to the L. …

Foundational Checklist Of The Amphibians Of Wise County, Virginia, Sarah R.A. Davidson, David L. Chambers

Virginia Journal of Science

The Appalachian Mountains are arguably home to the highest degree of amphibian diversity in the world, particularly caudate (salamander) biodiversity. Despite the high degree of amphibian endemism in the Appalachians, several regions remain unsurveyed for amphibian species. In addition to this knowledge gap, we are in the midst of alarming amphibian biodiversity loss. Thus, it is of the utmost importance to bridge this knowledge gap by conducting surveys before some of these amphibian species are lost. We surveyed Wise County (previously unsurveyed county in the Appalachian Mountains with no records existing in the primary literature) over two years to assess …

Mojave Applied Ecology Notes Fall 2010, Adria Decorte, Sharon Altman, Alex Suazo

Mojave Applied Ecology Notes

Adria DeCorte defense, Mojave desert inventory and monitoring mapping project, effect of burial depth on Brassica tournefortii seeds

Development Of Predatory Behavior In Juvenile Fish: Evidence Of Attraction To Prey Chemical Alarm Cues By Naïve Coral Reef Predator, (Pseudochromis Fuscus), Shannon Odell

Independent Study Project (ISP) Collection

Chemical alarm cues and their function on the coal reef has become an area of increasing interest in the study of predator-prey dynamics (Smith 1999, Friesen and Chivers 2006, Holmes and McCormick 2010). One prominent question in understanding the evolutionary basis for the development of chemical alarm cues is determining how these cues benefit the sender directly (Chivers 1996). One way chemical alarm cues found in freshwater systems have been found to benefit the sender of the cue is through attraction of secondary predators to the chemical alarm cue, which then interfere with the primary attack and increase chances of …

Nutrient Cycling In Impacted Stream Ecosystems: From Microbes To Watersheds, David James Van Horn

Biology ETDs

The conditions found in stream ecosystems are an integration of watershed characteristics and processes. Anthropogenic disturbances are part of this integration and include direct inputs to streams, alteration of riparian areas, and modification of catchment properties which affect material inputs. Impacts to discrete portions of terrestrial watersheds combine as water moves down gradient, transporting the byproducts of catchment disturbances to streams including, nutrients, organic materials, particulates, and toxins. This dissertation explores the effects of disturbance on nutrient cycling in stream ecosystems at three spatial scales: the patch scale includes localized processes and assemblages, the reach scale encompasses tens to hundreds …

The Identity Of The Crackling, Luminescent Frog Of Suriname (Rana Typhonia Linnaeus, 1758) (Amphibia, Anura), E. O. Lavilla, José A. Langone, José M. Padial, Rafael O. De Sá

Biology Faculty Publications

Review of the literature and recently available field notes from the collector of the type allows a reconsideration of the identity of the Linnaean name Rana typhonia. We provide evidence to demonstrate that the Linnaean species is neither a bufonid nor an Asiatic ranid, but a Neotropical hylid. Subsequently, we consider Rana typhonia as an older synonym of Rana venulosa Laurenti, 1768, redescribing its holotype under the new combination, Trachycephalus typhonius (Linnaeus, 1758).

Ecological Thresholds In Marine Communities: Theory, Experiments And Management. In Threshold Dynamics In Marine Coastal Systems (Theme Section), Richard W. Osman, Pablo Munguia, Roman Zajac

Biology and Environmental Science Faculty Publications

There is increasing interest in the resilience of marine and estuarine populations, communities and ecosystems, and their rapid change when stresses reach some threshold or tipping point. Current research on thresholds is altering our understanding of these systems, the processes by which they change, and our approach to their management and restoration. In this Theme Section conceptual, modeling, and empirical studies explore threshold dynamics in marine coastal systems in a variety of habitats and across different scales. The contributions provide a window on present research, highlight some of the issues being debated, and point to some of the potential applications …

The Identity Of Zachaenus Roseus Cope, 1890 (Anura: Species Inquirenda), Esteban O. Lavilla, J. J. Nuñez, F. E. Rabanal, José A. Langone, Rafael O. De Sá

Biology Faculty Publications

Zachaenus roseus Cope, 1890, has puzzled systematists working in southern South America. A single individual, the holotype, has ever been collected and this specimen is in extremely poor preservation condition. Herein, the precise location of the type locality of Z. roseus is determined based on a historical review of the literature. Furthermore, following a careful comparison with all species that inhabit the southern austral forest, and that could potentially correspond to Zachaenus roseus, we conclude that this taxon is placed in the synonymy of Eupsophus calcaratus (Günther, 1881)