Ecology and Evolutionary Biology Commons^™

Ecology And Morphology Of The Late Miocene Musk Deer, Longirostromeryx Wellsi (Artiodactyla: Moschidae: Blastomerycinae), Katheryn Y. C. Chen

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Longirostromeryx wellsi, one of the latest surviving members of the extinct clade Blastomerycinae (Artiodactyla: Moschidae), possesses highly derived craniodental morphology that deviates from typical musk deer form. Previous work suggests that the unique anatomy of L. wellsi represents adaptations for occupying open savannas. To test this hypothesis I conduct principal components analysis on five postcranial bones of L. wellsi, comparing them to that of several extant ruminant artiodactyls, which are divided among seven habitat categories. These elements are also compared with the postcrania of other blastomerycines. These analyses indicate that L. wellsi anatomy is most similar to that of other …

Home Range, Habitat Use, And Movements Of Native Northern Map Turtles (Graptemys Geographica), And Sympatric Invasive Red-Eared Slider Turtles (Trachemys Scripta Elegans), In The Upper Niagara River, Brian E. Haas

Biology Theses

Turtle populations throughout the world are in decline due to the effects associated with anthropogenic disturbances. Northern map turtles in the Upper Niagara River are facing the same effects associated with shoreline development, pollution, and human induced mortality. A biotelemetric study was conducted to understand the population structure, habitat use, and behavior of northern map turtles in the Upper Niagara River. Turtles were trapped, outfitted with radio and sonic transmitters, and tracked from August 2013 until April 2015. Invasive red-eared sliders, which also inhabit the Niagara River were captured and tracked to allow for comparison. This invasive species is a …

Latitudinal Variation In Thermal Tolerance And Preference Of Fundulus Notatus And F. Olivaceus: Implications For Temperature Mediated Reproductive Isolation, Laura Kristin Stewart

Master's Theses

Temperature is one of the most pervasive and influential abiotic factors affecting the life histories of fish, regulating a host of physiological processes and influencing behavioral thermoregulation. Fundulus notatus, the blackstripe topminnow, and F. olivaceus, the blackspotted topminnow, are widely distributed species located in drainages along the northern part of Gulf of Mexico (30°N latitude) and as far north as southern Illinois (39°N latitude). However, F. notatus has a much broader range reaching up into the Great Lakes (43°N latitude). Due to their broad geographical range, these populations inhabit a wide range of thermal regimes, thus …

A Search For Parent-Of-Origin Effects On Honey Bee Gene Expression, Sarah D. Kocher, Jennifer M. Tsuruda, Joshua D. Gibson, Christine M. Emore, Miguel E. Arechavaleta-Velasco, David C. Queller, Joan E. Strassmann, Christina M. Grozinger, Michael R. Gribskov, Phillip San Miguel, Rick Westerman, Greg J. Hunt

Biology Faculty Research

Parent-specific gene expression (PSGE) is little known outside of mammals and plants. PSGE occurs when the expression level of a gene depends on whether an allele was inherited from the mother or the father. Kin selection theory predicts that there should be extensive PSGE in social insects because social insect parents can gain inclusive fitness benefits by silencing parental alleles in female offspring. We searched for evidence of PSGE in honey bees using transcriptomes from reciprocal crosses between European and Africanized strains. We found 46 transcripts with significant parent-of-origin effects on gene expression, many of which overexpressed the maternal allele. …

Traditional Medicinal Uses Of Small Mammal Products: A Case Study Of The African Savannah Hares, Crested Porcupines And Rock Hyraxes In Serengeti District, Tanzania, Flora John Magige

Tanzania Journal of Science

Traditional medicines, both plant and animal products, have been used to cure various diseases since time immemorial especially in rural areas worldwide. Many studies have focused on traditional plant products, but little research has been conducted on animal traditional medicines. This study investigated  the use of small mammal  products for medicinal purposes in three villages bordering Serengeti National Park in Serengeti District, Tanzania. A total of 71 respondents were interviewed in Kisangura, Nyamburi and Machochwe villages in November 2010, using questionnaires. Villagers hunted small mammals mainly by dogs for cultural and ornamental reasons. Products of African savannah hare (Lepus microtis), …

Biofilm Formation By Borrelia Burgdorferi Sensu Lato, Venkata Arun Timmaraju, Priyanka A.S. Theophilus, Kunthavai Balasubramanian, Shafiq Shakih, David F. Luecke, Eva Sapi

Biology and Environmental Science Faculty Publications

Bacterial biofilms are microbial communities held together by an extracellular polymeric substance matrix predominantly composed of polysaccharides, proteins and nucleic acids. We had previously shown that Borrelia burgdorferi sensu stricto, the causative organism of Lyme disease in the United States is capable of forming biofilms in vitro. Here, we investigated biofilm formation by B. afzelii and B. garinii, which cause Lyme disease in Europe. Using various histochemistry and microscopy techniques, we show that B. afzelii and B. garinii form biofilms, which resemble biofilms formed by B. burgdorferisensu stricto. High-resolution atomic force microscopy revealed similarities in the …

Assessing Feeding Preferences And Spatial Patterns Of Lagodon Rhomboides Linnaeus, Alexandria V. Lamle

Master of Science in Integrative Biology Theses

Mesograzers have the ability to greatly mitigate the effects of eutrophication in seagrass systems. In this study we look at pinfish (Lagodon rhomboides Linnaeus) as a potential epiphytic grazer and assess feeding preferences during a transitional stage in the ontogenetic diet shift exhibited by these fish. Since pinfish are abundant in seagrass meadows in the northern Gulf of Mexico, their dietary preferences have the potential to greatly impact seagrasses in this system. Twenty-four hour feeding trials were conducted to determine pinfish preference between seagrass (Thalassia testudinum) and algal epiphytes. St. Joseph Bay, FL was also surveyed to …

Great Lake Island Biogeography Of Plethodon Cinereus: Effect Of Island Elevation On Color Polymorphism, Cameron N. Eddy

Masters Theses

Islands have long fascinated ecologists and evolutionary biologists because they provide replicated systems with which to test hypotheses regarding evolutionary and ecological theory. Because islands are relatively simple systems, they enable researchers to isolate specific factors responsible for observed phenomena. Many current questions in ecology and evolutionary biology have been addressed in island systems. For example, factors involved in the genetic divergence of populations are easier to discern in island populations because confounding effects of gene flow from adjacent populations are limited. This study focuses on isolated island populations of the color polymorphic Eastern Red-backed Salamander (Plethodon cinereus) …

Seasonal Dynamics And Micro-Climatic Preference Of Two Alpine Endemic Hypogean Beetles, Stefano Mammola, Elena Piano, Pier Mauro Giachino, Marco Isaia

International Journal of Speleology

Hypogean beetles generally live in stable environments, characterized by constant temperature and high relative humidity. Changes in the underground microclimatic conditions generally induce local migrations of the beetles through the hypogean environment in search of suitable microhabitats. We studied the seasonal dynamics and the micro-climatic preference of two Alpine endemic hypogean beetles - Sphodropsis ghilianii (Coleoptera, Carabidae) and Dellabeffaella roccae (Coleoptera, Cholevidae) - in the hypogean complex of Pugnetto (Graian Alps, Italy). We surveyed the two species for one year, using baited pitfall traps and measuring temperature and humidity along the two main caves. We used logistic regression mixed models …

Fuels And Fires Influence Vegetation Via Above- And Belowground Pathways In A High-Diversity Plant Community, Paul R. Gagnon, Heather A. Passmore, Matthew Slocum, Jonathan A. Myers, Kyle E. Harms, William J. Platt, C.E. Timothy Paine

Biology Faculty Research

1. Fire strongly influences plant populations and communities around the world, making it an important agent of plant evolution. Fire influences vegetation through multiple pathways, both above- and belowground. Few studies have yet attempted to tie these pathways together in a mechanistic way through soil heating even though the importance of soil heating for plants in fire-prone ecosystems is increasingly recognized.
2. Here we combine an experimental approach with structural equation modelling (SEM) to simultaneously examine multiple pathways through which fire might influence herbaceous vegetation. In a high-diversity longleaf pine groundcover community in Louisiana, USA, we manipulated fine-fuel biomass and monitored the …

Genomic Signatures Of Cooperation And Conflict In The Social Amoeba, Elizabeth A. Ostrowski, Yufeng Shen, Xiangjun Tian, Richard Sucgang, Huaiyang Jiang, Jiaxin Qu, Mariko Katoh-Kurasawa, Debra A. Brock, Christopher Dinh, Fremiet Lara-Garduno, Sandra L. Lee, Christie L. Kovar, Huyen H. Dinh, Viktoriya Korchina, Laronda Jackson, Shobha Patil, Yi Han, Lesley Chaboub, Gad Shaulsky, Donna M. Muzny, Kim C. Worley, Richard A. Gibbs, Stephen Richards, Adam Kuspa, Joan E. Strassmann, David C. Queller

Biology Faculty Research

• Molecular evolution analyses reveal the history of social conflict
• Genes that mediate social conflict show signatures of frequency-dependent selection
• Balanced polymorphisms suggest that cheating may be stable and endemic

Cooperative systems are susceptible to invasion by selfish individuals that profit from receiving the social benefits but fail to contribute. These so-called "cheaters" can have a fitness advantage in the laboratory, but it is unclear whether cheating provides an important selective advantage in nature. We used a population genomic approach to examine the history of genes involved in cheating behaviors in the social amoeba Dictyostelium discoideum, testing whether these genes experience …

Investigations Of Larval Pacific Lamprey Entosphenus Tridentatus Osmotic Stress Tolerance And Occurrence In A Tidally-Influenced Estuarine Stream, Gregory Shell Silver

Dissertations and Theses

Pacific lamprey is a culturally valuable species to indigenous people, and has significant ecological importance in freshwater and marine ecosystems. Over the past several decades, constrictions in range and reductions in Pacific lamprey abundance have been observed in Western North America, and may be indicators of range-wide declines. In the face of declining populations, the U.S. Fish and Wildlife Service has partnered with tribal, state, federal, and local entities to implement a regional Pacific lamprey conservation agreement aimed at reducing threats to Pacific lamprey and improving their habitats and population status. Research needs identified in the conservation agreement include assessing …

Factors Constraining The Reproductive Output Of Baptisia Alba Macrophylla, Ashley Morgan Hembrough

Theses and Dissertations

Baptisia alba macrophylla, a native, herbaceous perennial legume, produces inflorescences with a large number of flowers, yet matures relatively few fruits. We hypothesized that the number of seeds matured by B. alba macrophylla is maximized based on resource availability at each stage of development, but this optimal number is further compromised by extrinsic factors including pollen limitation and pre-dispersal seed predation by the weevils Apion rostrum and Tychius sordidus. To test this hypothesis, we conducted a field experiment at two sites: (i) the John English Prairie, located in Hudson, IL, and also (ii) the Sugar Grove Nature Center and Funks …

The Characterization Of A Vital Wisconsin Waterway: A Biological Assessment Of The Lower Fox River From 2006-2014, Emily L. Kiehnau

Lawrence University Honors Projects

The Lower Fox River has historically been used as a navigational crossroads, a waste disposal system, and source of hydroelectric power. Over the years, heavy use of the river has negatively affected water quality and the overall health of the system. Unhealthy rivers cannot function properly. Biological assessment based on animal surveys are often used to determine river health. I used data from the Lawrence University and Fox River Navigational System Authority invasive species-monitoring project to explore how the distribution of animals in the Fox River has changed over time and across locations. Monitoring surveys have taken place between June …

Reproductive Ecology And Hatchling Behavior Of Olive Ridley Sea Turtles In Honduras, Noemi Duran Royo

Loma Linda University Electronic Theses, Dissertations & Projects

In this dissertation, I investigated the reproductive ecology and hatchling behavior of the olive ridley (Lepidochelys olivacea) sea turtle population nesting in Pacific Honduras. I begin by reviewing olive ridley reproduction, human use of this species, and past and present conservation on nesting beaches. I also propose a conservation strategy to improve nesting beach conservation programs in developing countries. In the first of four empirical studies, I used microsatellite markers to assess multiple paternity levels of the Honduran population, and found evidence for multiple paternity in 75% of the nests examined. This rate, higher than expected for a population of …

Predation In A Natural Community Of Marine Mollusks: Using Morphology To Determine Predator-Prey Ecology, Danielle N. Araiza, Erica Valdez

DePaul Discoveries

Predatory gastropod mollusks in the family Naticidae feed on bivalve mollusks and leave distinctive markings in the form of countersunk circular boreholes on the shells. These boreholes possess both an inner borehole diameter (IBD) and an outer borehole diameter (OBD) which are proportional to the size of the predator. It has been proposed that the ratio of IBD to OBD can be used to identify predator species. Variation in the ratio of the IBD to OBD was examined in two prey species (Dwarf surf clam, Incongruous ark clam) collected from Otter Island beach in South Carolina to determine if clams …

Molecular Diversity And Gene Evolution Of The Venom Arsenal Of Terebridae Predatory Marine Snails, Juliette Gorson, Girish Ramrattan, Aida Verdes, Elizabeth M. Wright, Yuri Kantor, Ramakrishnan Rajaram Srinivasan, Raj Musunuri, Daniel Packer, Gabriel Albano, Wei-Gang Qiu, Mandë Holford

Publications and Research

Venom peptides from predatory organisms are a resource for investigating evolutionary processes such as adaptive radiation or diversification, and exemplify promising targets for biomedical drug development. Terebridae are an understudied lineage of conoidean snails,which also includes cone snails and turrids. Characterization of cone snail venompeptides, conotoxins, has revealed a cocktail of bioactive compounds used to investigate physiological cellular function, predator-prey interactions, and to develop novel therapeutics. However, venom diversity of other conoidean snails remains poorly understood. The present research applies a venomics approach to characterize novel terebrid venom peptides, teretoxins, from the venom gland transcriptomes of Triplostephanus anilis and Terebra …

Riparian Restoration, Success Criteria, And Application To The Bart Sabrecat Creek Riparian Restoration Project In Fremont, California, Jody D. Fessler

Master's Projects and Capstones

Riparian restoration is a complex, inter-disciplinary field that is open to interpretation by its practitioners. This research reviews some of the critical elements of riparian restoration, including the watershed, surrounding land use, adjacent habitat, and riparian buffers; special-status species, endangered species, and habitat type and structure; invasive species control; water quality and hydrology; and soil and soil microbial communities. Three methods of evaluating restoration projects are discussed, including the Society for Ecological Restoration International Primer, the California Department of Fish and Wildlife (CDFW) California Salmonid Stream Habitat Restoration Manual and CDFW permitting, and the California Rapid Assessment Method. Finally, the …

Nsf Grant Helps Preserve Parasite Collections [Press Release], Scott Gardner, Leslie Reed

Scott L. Gardner Publications

The National Science Foundation has awarded a $500,000 grant that will allow four major parasite collections to be digitized. The collections are part of UNL's Harold W. Manter Laboratory of Parasitology. Scott Gardner (pictured) is the curator and director of the Manter Laboratory.

A $500,000 grant from the National Science Foundation will allow the Harold W. Manter Laboratory of Parasitology to digitally preserve four major collections of parasite specimens donated to the University of Nebraska-Lincoln during the past five years.

Comparative Analysis Of Anti-Bd Bacteria From Six Malagasy Frog Species Of Ranomafana National Park, Kelsey Savage

Senior Honors Projects, 2010-2019

As Malagasy amphibians are facing an impending extinction crisis from the lethal skin fungus Batrachochytrium dendrobatidis (Bd), it has become imperative to proactively mitigate the threat. Bd sporangia develop in the skin of infected amphibians and cause the skin to thicken, leading to ionic imbalance and eventual heart failure. It has been shown that certain bacterial species are able to inhibit Bd growth on amphibians by producing antifungal metabolites. Community-based probiotics are one approach used to combat chytridomycosis by inoculating an environment with Bd-inhibitory bacteria so that many amphibian species are treated at once. With this method, it is important …

Fishing For A Sustainable Future: Aquaponics As A Method Of Food Production, Richard Ramsundar

Student Theses 2015-Present

This thesis compares and explains the advantages aquaponics farming has over modern industrial intensive farming. Through a comparison natural capital usage, conservation, recycling and cost, the thesis advocates for the expansion of aquaponics usage in urban settings. The thesis also explains the history of intensive farming and aquaponics in America, the science of how aquaponics operates, the economic and environmental costs of modern intensive farming versus aquaponics farming, and the social implications of aquaponics. Lastly, I propose a policy that reallocates farm subsidies by modifying the Farm Bill. Then I propose policies that support creating a new standard of farm …

Divergence Of Vertebrate And Insect Specific Toxin Genes Between Three Species Of Widow Spider, Shannon G. Kahn

Honors College Theses

The Brown widow spider, Latrodectus geometricus, is an introduced species to the southern United States (Brown 2008). The Brown widow is a member of the widow spider genus Latrodectus which includes the southern Black widow (L. mactans) and 29 other venomous species. All species of widow spiders produce venom which is used against both predator and prey. These venoms are composed of several different species-specific toxins, each encoded by a different gene (Graudins 2012). Previous research has shown that positive selection pressures affect the venom of snakes and snails, thus aiding in adaptive potential of the species …

Phylogeography Of Darlingtonea Kentuckensis And Molecular Systematics Of Kentucky Cave Trechines, Olivia Frances Boyd

Masters Theses & Specialist Projects

The monotypic cave carabid genus Darlingtonea is widely distributed along the eastern band of the Mississippian/Pennyroyal plateau in Kentucky and northern Tennessee. DNA sequence data from the mitochondrial gene cytochrome oxidase subunit I (COI) was collected from one to four individuals from 27 populations, and patterns of phylogeography and population structure were inferred from COI haplotypes. A hierarchical analysis of molecular variance found low nucleotide diversity within populations and statistically significant variation among geographically-defined groups tested based on two a priori hypotheses of structure. Population structure among five distinct genetic clusters identifies approximate locations of barriers to gene flow among …

Fisheries Management Paper No 274 - Finfish Resources Of The Peel-Harvey Estuary - Harvest Strategy 2015-2020 (Version 1.0), Department Of Fisheries, Western Australia

Fisheries Management Papers

WEST COAST ESTUARINE MANAGED FISHERY (AREA 2)

Harvest strategies for aquatic resources managed by the Western Australian Department of Fisheries (the Department) are formal documents prepared to support the decision-making processes required to ensure the management of these resources are consistent with the principles of Ecologically Sustainable Development (ESD). The objectives of ESD are reflected in the objects of the Fish Resources Management Act 1994 (FRMA), Section 3, and the draft Aquatic Resources Management Bill 2013 (ARMB), Clause 9, which will replace the FRMA once enacted.

The publication of these strategies is intended to make the decision-making considerations and processes …

Multi-Level Adjustments In Singing Behavior By A Migratory Songbird In Response To Urbanization, Jacob Job

Dissertations

The spread of high-amplitude anthropogenic noise across natural landscapes is a serious issue for vocally communicating animals. Noise disrupts communication, which has implications for individual fitness and population persistence. In response, animals adjust their vocal signals with increasing noise. As the increase in noise has occurred on a relatively short time scale, evolutionary responses are likely not the primary cause of adjustments. Instead, short-term behavioral adjustments may drive population differences; however, such adjustments are currently not well understood. Moreover, noise is only one characteristic of urbanized landscapes and whether other characteristics, such as highly reverberant surfaces interact with noise to …

Parasite Infection Mediates Trait Tradeoffs In Fundulus Heteroclitus, Sarah Dunn

Honors College Theses

To be successful, an animal must eat, grow, and reproduce. With limited resources, there are tradeoffs between these critical life history parameters but the direction of the tradeoffs is largely unknown in a changing environment. To determine whether environmental context affects life-history tradeoffs, I surveyed and quantified investment into reproduction, growth, and a proxy for immunity (parasitism), in the mummichog, Fundulus heteroclitus, a common inhabitant of salt marshes in Georgia. Three salt marsh sites along coastal Georgia (Shellman Bluff, Skidaway Island, and Tybee Island) were selected using a proxy for anthropogenic disturbance (impervious surface), which also fell along a …

Forest Sustainability In An Altered Landscape Requires Human Intervention, Adam C. Labatore

Biology Theses

Recruitment success determines the abundance and composition of plant communities. Successful recruitment can be summarized as a simple dichotomy of establishment versus seed limitations. Establishment limitation occurs when plant populations are inhibited by habitat availability and quality, whereas seed limitation occurs when seeds fail to arrive in necessary densities. Recruitment failure undermines overstory sustainability if the existing trees cannot replace themselves. Preliminary analysis indicated tree recruitment failure at an urban nature preserve with too few tree seedlings to replace mature canopy trees. These data suggested that the urban forest was not sustainable. The overarching goal of the study was to …

Consequences Of Pre-Inoculation With Native Arbuscular Mycorrhizae On Root Colonization And Survival Of Wyoming Big Sagebrush (Artemisia Tridentata Ssp. Wyomingensis) Seedlings After Transplanting, Bill Eugene Davidson

Boise State University Theses and Dissertations

Inoculation of seedlings with arbuscular mycorrhizal fungi (AMF) is a common practice aimed at improving seedling establishment. The success of this practice largely depends on the ability of the inoculum to multiply and colonize the growing root system after transplanting. These events were investigated in Artemisia tridentata ssp. wyomingensis (Wyoming big sagebrush) seedlings inoculated with native AMF. Seedlings were first grown in a greenhouse in sterilized soil (non-inoculated seedlings) or soil containing a mixture of native mycorrhizae (inoculated seedlings). Three-month old seedlings were transplanted to 24 L pots containing soil from a sagebrush habitat (mesocosm experiments) or to a recently …

Interspecific Egg Rejection As Ecological Collateral Damage From Selection Driven By Conspecific Brood Parasitism, Bruce E. Lyon, Daizaburo Shizuka, John M. Eadie

School of Biological Sciences: Faculty Publications

Distinguishing between interspecific and intraspecific coevolution as the selective driver of traits can be difficult in some taxa. A previous study of an avian obligate brood parasite, the black-headed duck, Heteronetta atricapilla, suggested that egg rejection by its two main hosts (two species of coot) is an incidental by-product of selection from conspecific brood parasitism within the hosts, not selection imposed by the interspecific parasite. However, although both species of coot can recognize and reject eggs of conspecific brood parasites, which closely resemble their own, they paradoxically also accept a moderate fraction of duck eggs (40–60%), which differ strikingly …

Life History And Natural Enemies Of Parthenolecanium Spp. In Four Southeastern States, Ernesto Robayo Camacho

All Dissertations

Soft scales (Hemiptera: Coccidae) are some of the most prevalent and difficult to control arthropod pests in urban landscapes of the southern United States. European fruit lecanium, Parthenolecanium corni (Bouche), and oak lecanium, Parthenolecanium quercifex (Fitch), are commonly found in mixed populations as pests of oak trees (Quercus spp.) in the region. The phenology and natural enemies of the two species are poorly understood, which in turn hinders pest managers' ability to develop an integrated management program against these species. This research project aims to fill the information gaps concerning the life history and natural enemies of P. corni and …