Ecology and Evolutionary Biology Commons^™

The First Complete Genome Of The Simian Malaria Parasite Plasmodium Brasilianum, Marko Bajic, Shashidhar Ravishankar, Mili Sheth, Lori A. Rowe, M. Andreina Pacheco, Dhruviben S. Patel, Dhwani Batra, Vladimir Loparev, Christian Olsen, Ananias A. Escalante, Fredrik Vannberg, Venkatachalam Udhayakumar, John W. Barnwell, Eldin Talundzic

Harold W. Manter Laboratory of Parasitology: Library Materials

Naturally occurring human infections by zoonotic Plasmodium species have been documented for P. knowlesi, P. cynomolgi, P. simium, P. simiovale, P. inui, P. inui-like, P. coatneyi, and P. brasilianum. Accurate detection of each species is complicated by their morphological similarities with other Plasmodium species. PCR-based assays offer a solution but require prior knowledge of adequate genomic targets that can distinguish the species. While whole genomes have been published for P. knowlesi, P. cynomolgi, P. simium, and P. inui, no complete genome for P. brasilianum has …

Urban Nesting Biology, Population Viability And Ecology Of The Willow Flycatcher, Empidonax Traillii, Stephanie Alexandra Byrne Doorly

Dissertations and Theses

Reproductive success, in any species, relies both on the habitat utilized to reproduce and on the successful reproductive output of individual animals within a population. Populations in turn rely on the reproductive fitness of the individual. Whether populations remain stable, grow, or decline ultimately relies on the combined reproductive output of the individuals within that population.

We studied the Willow Flycatcher (Empidonax traillii; henceforth WIFL), a well-studied Neartic-Neotropical migrant passerine whose breeding range extends from the east to west coast of North America. Across much of their range, and in particular in the western regions, breeding population are …

A Novel Vaccine Candidate Against Rabbit Hemorrhagic Disease Virus 2 (Rhdv2) Confers Protection In Domestic Rabbits, Angela M. Bosco-Lauth, Bethany Cominsky, Stephanie Porter, J. Jeffrey Root, Amber Schueler, Gary Anderson, Sara Vanderwal, Andy Benson

United States Department of Agriculture Wildlife Services: Staff Publications

OBJECTIVE To evaluate efficacy of a novel vaccine against rabbit hemorrhagic disease virus 2 (RHDV2) in domestic rabbits.

ANIMALS 40 New Zealand White rabbits obtained from a commercial breeder.

PROCEDURES Rabbits were vaccinated and held at the production facility for the duration of the vaccination phase and transferred to Colorado State University for challenge with RHDV2. Rabbits were challenged with oral suspensions containing infectious virus and monitored for clinical disease for up to 10 days. Rabbits that died or were euthanized following infection were necropsied, and livers were evaluated for viral RNA via RT-PCR.

RESULTS None of the vaccinated animals …

Landscape-Level Long-Term Biological Research And Monitoring Plan For The Crane Trust, Andrew J. Caven, Joshua D. Wiese, Bethany L. Ostrom, Kelsey C. King, Jenna M. Malzahn, David M. Baasch, Brice Krohn

Zea E-Books Collection

Our obligation is to make sure we are effectively utilizing science to meet the objectives of the Platte River Whooping Crane Maintenance Trust (1981) laid out in its charter “to rehabilitate and preserve a portion of the habitat for Whooping Cranes and other migratory birds in the Big Bend reach of the Platte River between Overton and Chapman (i.e., Central Platte River Valley), Nebraska”. The original declaration is aimed at maintaining “the physical, hydrological, and biological integrity of the Big Bend area as a life-support system for the Whooping Crane and other migratory species that utilize it.” It was clear …

Exceptional Larval Morphology Of Nine Species Of The Anastrepha Mucronota Species Group (Diptera: Tephritidae), Erick J. Rodriguez, Gary J. Steck, Matthew R. Moore, Allen L. Norrbom, Jessica Diaz, Louis A. Somma, Raul Ruiz-Arce, Bruce D. Sutton, Norma Nolazco, Alies Muller, Marc A. Branham

Papers in Evolution

Anastrepha is the most diverse and economically important genus of Tephritidae in the American tropics and subtropics. The striking morphology of the third instars of Anastrepha caballeroi Norrbom, Anastrepha crebra Stone, Anastrepha haplacantha Norrbom & Korytkowski, Anastrepha korytkowskii Norrbom, Anastrepha nolazcoae Norrbom & Korytkowski, and three newly discovered and as yet formally unnamed species (Anastrepha sp. Peru-82, Anastrepha sp. nr. protuberans, and Anastrepha sp. Sur-16), and the more typical morphology of Anastrepha aphelocentema Stone, are described using light and scanning electron microscopy. To contribute to a better understanding of the interspecific and intraspecific variation among species in the mucronota …

Ecology And Evolution Of Social Information Use, Clare T. M. Doherty

Dartmouth College Ph.D Dissertations

Sociality is a strategy many animals employ to cope with their environments, enabling them to survive and reproduce more successfully than would otherwise be possible. When navigating their environments and making decisions, social individuals often use information provided by conspecifics (in the form of social cues and signals), thereby increasing the scope and reliability of the information they can gather. However, social information use may be influenced by many factors, including key differences in context across the physical and social environment. My thesis asks and answers a series of questions regarding the trade-offs in social information use across different contexts, …

The Nebraska Bird Review, Subscription And Organization Information (December 2022)

Nebraska Bird Review

The Nebraska Bird Review is published quarterly by the Nebraska Ornithologists’ Union, Inc., as its official journal, and is sent to members not in arrears of dues. Annual subscription rates (on a calendar-year basis only): $25 in the United States and $35 in all other countries, payable in advance. Single copies are $7 each, postpaid, in the United States and $9 elsewhere. Send orders for back issues to Anita Breckbill, NOU Librarian, c/o Music Library, WMB 30, University of Nebraska, Lincoln, NE 68588-0101 (or at the email address listed below).

Memberships in the NOU (on a calendar-year basis only): Active …

Fall Field Report, August-November 2022, W. Ross Silcock

Nebraska Bird Review

All in all, this was a fairly uneventful fall season, although even uneventful seasons have their share of oddities and variations from the norm. A noteworthy event was a fire that took out much of the brushy habitat in Carter Canyon, Scotts Bluff Co (see photo on following page). It will be interesting to read upcoming spring reports to see what effect the fire might have had on numbers of birds that frequent brushy areas, like towhees and buntings. Optimistically, fires have attracted rare woodpeckers, with first to arrive Black-backed, which would be a first documented Nebraska record, and typically …

Reproductive Traits And Change In Body Shape Of Neonates In The Oak Forest Skink, Plestiodon Lynxe, Manuel Feria-Ortiz, Uri Omar García-Vázquez, Carlos Joaquín Pavón-Vázquez, Adrián Nieto-Montes De Oca

Publications and Research

Reproductive traits are critically important for understanding how organisms adapt to their respective environments. In this study, we provide information on relative litter mass (RLM) and other litter and neonate related characters of nine female Plestiodon lynxe captured in the field. We also recorded seven body dimensions in 16 neonates and 15 two-month juveniles, and on the basis of these dimensions we compared the body shape of these two age classes to detect changes in the proportions of body parts. The average litter size (4.55) is larger than that found in other viviparous species of Plestiodon, but smaller than …

Forest Cover And Geographic Distance Influence Fine-Scale Genetic Structure Of Leaf-Toed Geckos In The Tropical Dry Forests Of Western Mexico, Connor M. French, Casey-Tyler Berezin, Isaac Overcast, Fausto R. Méndez De La Cruz, Saptarsi Basu, Roberto Lhemish Martínez Bernal, Robert W. Murphy, Michael J. Hickerson, Christopher Blair

Publications and Research

The biodiversity within tropical dry forests (TDFs) is astounding and yet poorly catalogued due to inadequate sampling and the presence of cryptic species. In the Mexican TDF, endemic species are common, and the landscape has been continually altered by geological and anthropogenic changes. To understand how landscape and environmental variables have shaped the population structure of endemic species, we studied the recently described species of leaf-toed gecko, Phyllodactylus benedettii, in coastal western Mexico. Using double-digest restriction site-associated DNA sequencing data, we first explore population structure and estimate the number of ancestral populations. The results indicate a high degree of …

Reanalysis Of The Yunnan Population Of Scorpiops Kubani With A Description Of A New Species, Scorpiops Lowei Sp. N. (Scorpiones: Scorpiopidae), Victoria Tang

Euscorpius

The Yunnan population of Scorpiops kubani (Kovařík, 2004) is reassessed based on recently collected specimens from this region. A misidentification of that species is revealed, which leads to a description of a new species, Scorpiops lowei sp. n.

Morphometric And Molecular Characterization Of An Unpigmented Haemosporidian Parasite In The Neotropical Turnip-Tailed Gecko (Thecadactylus Rapicauda), Nubia E. Matta, Leydy P. González, Mario Vargas-Ramírez, Gediminas Valkiūnas, Ananias A. Escalante, M. Andreína Pacheco

Harold W. Manter Laboratory of Parasitology: Library Materials

Morphological traits from blood stages have been the gold standard for determining haemosporidian parasite species. However, the status of some taxa and the value of such traits in parasites from reptiles remain contentious. The scarce sampling of these species worsens the situation, and several taxa lack molecular data. A survey was performed in the Magdalena Department in Colombia, where 16 species of reptiles were captured. A peculiar haemosporidian parasite was found in the Turnip-tailed gecko Thecadactylus rapicauda. This haemosporidian does not show malarial pigment in blood stages under light microscopy; thus, it fits the Garnia genus’s characters belonging to …

A New Species Of Scorpiops Peters, 1861 From Yunnan Province, China, With A Preliminary Review Of Its Congeners In Yunnan (Scorpiones: Scorpiopidae), Victoria Tang

Euscorpius

A new species of Scorpiops Peters, 1861, Scorpiops tongtongi sp. n., is described from Yingjiang, Yunnan Province, China, based on a single adult female. The morphology of the new species is fairly distinguishable from other congeners in Yunnan even with unaided eye; it is characterized by the following combination of characters in female: a pair of moderately robust pedipalp chelae without proximal lobes, small median ocular tubercle, short superciliary carinae, less granulated tergites, proportionally elongate metasoma and relatively short and bulbous vesicle. The coloration of the new species also differs from other congeners in Yunnan by being brownish in …

Arthropod Assemblages At The Intersection Of Epiphyte And Soil Habitats: An Assessment Of Understory Level Nonvascular Epiphyte Communities And Their Connectivity Within A Tropical Montane Rainforest, David “Max” Jones

Independent Study Project (ISP) Collection

Canopy arthropods communities represent a disproportionate amount of global species richness (Stuntz 2001). Understanding arthropod composition and connectivity of lower epiphyte communities is important in understanding how canopy arthropods communities are formed and will respond to change (Floren and Linsenmair 1998). As such this study examined arthropod assemblages living within nonvascular epiphyte communities (epiphyte mats) living directly upon lower trunk regions of 24 trees in a tropical montane rain forest within the Santa Lucia Nature Reserve in Pichincha, Ecuador. Trees were assessed for size, epiphyte diversity, and epiphyte coverage before arthropod sampling within the epiphyte mats. Soil assessments were taken …

Timber Rattlesnake (Crotalus Horridus): A Species Conservation Assessment For The Nebraska Natural Legacy Project, Melissa J. Panella, Dan Fogell, Colleen Rothe-Groleau

Nebraska Game and Parks Commission: Publications

The primary goal in the development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the timber rattlesnake (Crotalus horridus) as a Tier 1 at-risk species. Provided here are general management recommendations regarding timber rattlesnakes. Conservation practitioners will need to use their professional judgment for management decisions based on objectives, location, and site-specific conditions. Based on the body of literature and available data, this species conservation assessment provides an overview of our current knowledge of timber …

Orb-Weaver Diversity And Niche Partitioning In Ecuador’S Amazonian Foothills: What Spiders Can Reveal About Tree Fall Gaps, Streams, And Cultivated Areas, Riley Endries

Independent Study Project (ISP) Collection

As abundant predators at the top of arthropod food chains, spiders are excellent bioindicators. Araneae is a megadiverse and extremely understudied order, especially in the tropics. This study aims to investigate the diversity of orb-weaver spiders across a disturbance gradient and variety of habitat types as well as their microhabitat preferences and potential niche partitioning. Spider collection was performed on spiders of the families Araneidae, Tetragnathidae, and Theridiosomatidae in Sumak Kawsay in Situ biological reserve in the lower elevation cloud forest of Ecuador’s Andean foothills. Spiders and webs were observed and analyzed from primary and secondary forest tree fall gaps, …

The Nesting Behavior Of Russet-Backed Oropendola On Sumak Allpa, Ecuador: An Analysis Of Nest Construction And Interactions With Competing Species, Claire Molina

Independent Study Project (ISP) Collection

Nests are the literal place of birth of bird species; they are incredibly important in the survival and reproduction of populations. Therefore, nesting behavior is a gateway into the lives and success of the animals. With the degradation of natural landscapes due to human activity, there is more of a need to monitor these nests to ensure healthy inhabitants. The Russet-backed Oropendola (Psarocolius angustifrons) creates unique, pendulous nests that are subject to piracy, parasitism, and predation; as well as weather phenomenon’s such as wind and rainstorms. This study describes the nest construction behavior, nest materials and nest architecture by collecting …

Observational Study Of Woolly Monkey Behavior And Vocalizations: Behavioral Time Allotment And Vocalization Habits Of A Small Population Of Poeppig’S Woolly Monkey (Lagothrix Lagotricha Poeppigii) In The Ecuadorian Amazon, Marina Smith-Hanke

Independent Study Project (ISP) Collection

Poeppig’s woolly monkey (Lagothrix lagotricha poeppigii), a species of primate native to the Amazonian regions of western Brazil, eastern Ecuador, and northeastern Peru, is classified as endangered by the IUCN. These large, frugivorous primates are threatened by habitat loss and climate change as a result of human interference. Deforestation, hunting, petroleum mining, and illegal trafficking are all huge threats to this species. As a result of these pressures, their populations have decreased by at least 30% over the past three generations. However, as keystone seed dispersers, they are essential for Amazonian ecosystem health; without their seed dispersal services, a loss …

Report Of Thanatosis In The Central American Scorpions Tityus Ocelote And Ananteris Platnicki (Scorpiones: Buthidae), Felipe Triana, Fabián Bonilla, Adriana Alfaro-Chinchilla, Carlos Víquez, Cecilia Díaz, Mahmood Sasa

Euscorpius

Thanatosis, or tonic immobility, is a behavior where animals adopt a motionless posture after a physical contact or very close proximity of a predator. This behavior has been described in a wide range of taxa, from invertebrates to vertebrates. For scorpions, tonic immobility has been reported in two buthids, Tityus pusillus and Tityus cerroazul, one hormurid, Liocheles australasiae, and one scorpiopsid, Scorpiops jendeki. Here we report other cases of this thanatosis for two buthid scorpions from lower Central America: Tityus ocelote and Ananteris platnicki. Thanatosis in these species were observed in wild, but was better documented …

Importance And Winter Ornithological Value Of Lake El-Golea (Ghardaïa, Algerian Sahara, Biad Radhia, Bounab Choayb, Guergueb El Yamine, Biad Mohamed Fetheddine, Houhamdi Moussa

Journal of Bioresource Management

This study is carried out on two winter period (2018-2019 and 2019-2020) in Lake El-Golea (Ghardaïa, northern Sahara of Algeria). Its objective is to determine the ornithological value of this lake and to in ferits importance in maintaining aquatic avifauna during the winter season. This inventory shows a diversity equivalent to forty-one species belonging to thirteen families and nine orders of which eighteen are protected by various Algerian and international laws. The most represented family is that of the Anatidae with twelve species while the family with the highest number is that of the Phenicopteridae represented only by one species, …

Seasonal Habitat Selection By American White Pelicans, Frederick L. Cunningham, Guiming Wang, D. Tommy King

United States Department of Agriculture Wildlife Services: Staff Publications

Resource utilization strategies of avian migrants are a major concern for conservation and management. Understanding seasonal habitat selection by migratory birds helps us explain the ongoing continental declines of migratory bird populations. Our objective was to compare the secondorder and third-order habitat selection by the American White Pelican (Pelecanus erythrorhynchos; hereafter pelican) between the breeding and non-breeding grounds. We tested the Lack hypothesis that habitat selection by migratory birds is stronger on the breeding grounds than on the nonbreeding grounds. We used random-effect Dirichlet-multinomial models to estimate the second-order habitat selection between the seasons with the GPS locations …

Effects Of Early‑Life Experience On Innovation And Problem‑Solving In Captive Coyotes, Andrew C. Garcia, Mitchell A. Parsons, Julie K. Young

United States Department of Agriculture Wildlife Services: Staff Publications

Early-life experience often shapes behaviors like innovation and exploration. These behaviors are important to animals encountering novel food resources in diverse habitats, such as mesocarnivores in urban areas. To understand if early-life experiences impact later-life behavior, we examined how coyotes (Canis latrans) responded to a multi-access puzzle box at two life stages: pup (~ 7 weeks) and dispersal (~ 10 months). We first exposed pups, still living with their parents and littermates, to a baited puzzle box. At dispersal age, we again tested both these pups and an age-matched control group that was not exposed to the puzzle …

Winter Diet Of Montezuma Quail In Arizona And New Mexico, Oscar E. López-Bujanda, Alberto Macías-Duarte, Reyna A. Castillo-Gámez, Angel B. Montoya

National Quail Symposium Proceedings

Investigating the diet composition of Montezuma quail (Cyrtonyx montezumae) is fundamental for unveiling how food resources limit the species’ population size and may provide relevant tools for their harvest and habitat management. The objective of this research was to determine the composition and geographic variation of the winter diet of the Montezuma quail in Arizona and New Mexico, USA, from quail crops harvested during the hunting seasons of 2008–2017. In addition, we used beta regression analyses to determine the effect of environmental factors and ecological variables (annual mean precipitation, annual mean temperature, landscape diversity, diet diversity, time of …

Population Density Estimates Of The Montezuma Quail (Cyrtonyx Montezumae) In West Texas, Alberto Macías-Duarte, Angel B. Montoya, James H. Weaver

National Quail Symposium Proceedings

In Texas, USA, populations of Montezuma quail (Cyrtonyx montezumae) can be found scattered across mountain ranges in the Trans-Pecos region, including the Davis and Guadalupe, and farther east into the Edwards Plateau region. Abundance and distribution information to assist land managers in the enhancement of Montezuma quail populations is scarce due to the species’ secretive behavior and unknown abundance. We aimed to provide population density indices to fill this information gap by using a search path technique. We searched for quail in the winter of 2018–2019 in West Texas at 6 study sites: 5 private ranches and Elephant …

The Southern Flying Squirrel (Glaucomys Volans) In Lincoln, Nebraska, Melissa J. Panella, Shaun M. Dunn, Thomas E. Labedz, Hugh H. Genoways

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The southern flying squirrel (Glaucomys volans) is considered a species of greatest conservation need in Nebraska and listed as threatened in the state. Historically, the geographic range of the southern flying squirrel in Nebraska has been restricted to five eastern counties from a northern suburb of Omaha, Douglas Co., southward in the four counties of Sarpy, Otoe, Nemaha, and Richardson, all bordering the Missouri River on the east. In late November of 2018, a resident of Lincoln, Lancaster Co., Nebraska, contacted the Nebraska Game and Parks Commission about an animal found dead in his yard. This animal proved …

Summer Field Report, June-July 2022, W. Ross Silcock

Nebraska Bird Review

As always, the summer season produces surprises, and this year was no exception. Surprises fall into different categories, though: genuine statewide rarities, within-state distributional rarities, and, of course in summer, nesting records at new locations, population notes, late and early dates and high numbers, increased knowledge about subspecies in the state, and miscellaneous things of interest. These categories are covered separately below after some housekeeping comments.

“Genuine statewide rarities” were led by the first state record Limpkin found by Karen Kader and seen by many in Sarpy Co. Potential 2nd or so state records were a Mexican Duck in Scotts …

2021 (33rd) Report Of The Nou Records Committee, Mark A. Brogie

Nebraska Bird Review

The functions and methods of the Nebraska Ornithologists’ Union Records Committee (NOURC) are described in its bylaws (NOURC 2010). The committee’s purpose is to provide a procedure for documenting unusual bird sightings and to establish a list of all documented birds for Nebraska. Species for which the NOURC seeks documentation (NOURC Review List) can be found at the NOU website www.NOUbirds.org. Starting in 2020, the NOURC decided to deal mainly with those species deemed as Accidental on the “Official List of the Birds of Nebraska”. Casual species and out-of- range species are now summarized in the “Seasonal Reports” of the …

The Nebraska Bird Review. Volume 90 September 2022 Number 3

Nebraska Bird Review

Summer Field Report, June - July 2022 by W. Ross Silcock ….90

2021 (33rd) Report of the NOU Records Committee by Mark A. Brogie … 113

Subscription and Organization Information … 123

Subscription And Organization Information

Nebraska Bird Review

logists’ Union, Inc., as its official journal, and is sent to members not in arrears of dues. Annual subscription rates (on a calendar-year basis only): $25 in the United States and $35 in all other countries, payable in advance. Single copies are $7 each, postpaid, in the United States and $9 elsewhere. Send orders for back issues to Anita Breckbill, NOU Librarian, c/o Music Library, WMB 30, University of Nebraska, Lincoln, NE 68588-0101 (or at the email address listed below). Memberships in the NOU (on a calendar-year basis only): Active Household (one or more people) $25; Sustaining Household (one or …

Divergent Neural And Endocrine Responses In Wild-Caught And Laboratory-Bred Rattus Norvegicus, Joanna Jacob, Sally Watanabe, Jonathan Richardson, Nick Gonzales, Emily Ploppert, Garet Lahvis, Aaron Shiels, Sadie Wenger, Kelly Saverino, Janhavi Bhalerao, Brendan Crockett, Erin Burns, Olivia Harding, Krista Fischer-Stenger, Kelly Lambert

United States Department of Agriculture Wildlife Services: Staff Publications

Although rodents have represented the most intensely studied animals in neurobiological investigations for more than a century, few studies have systematically compared neural and endocrine differences between wild rodents in their natural habitats and laboratory strains raised in traditional laboratory environments. In the current study, male and female Rattus norvegicus rats were trapped in an urban setting and compared to weight-and sex-matched conspecifics living in standard laboratory housing conditions. Brains were extracted for neural assessments and fecal boli were collected for endocrine [corticosterone and dehydroepiandrosterone (DHEA)] assays. Additionally, given their role in immune and stress functions, spleen and adrenal weights …