Biotechnology Commons^™

Practical Challenges In Delivering Dsrna For Woody Plant Protection, Zachary Bragg

Theses and Dissertations--Entomology

Unprecedented weather events associated with climate change, coupled with extensive anthropogenic stresses, have reduced the effectiveness of traditional forest pest management approaches, which can no longer keep pace with invasive species overwhelming naïve landscapes and native pests experiencing eruptive and expansive outbreaks. Double-stranded RNA-(dsRNA) mediated gene silencing, a type of RNA interference (RNAi), has been coopted for use as a biopesticide against a multitude of agricultural and horticultural pests and could serve as a powerful tool for woody plant protection. While effective initiation of gene silencing and subsequent mortality have been demonstrated in multiple tree pests, effective and efficient methods …

Examining The Effects Of Artemisia Annua On Neuro2a Cells, Wesley Lim

Honors Undergraduate Theses

Artemisia annua L. is a well-known medicinal herb used in Traditional Chinese Medicine for many centuries and contains artemisinin, which exhibits antimalarial properties [1] and is a potential treatment for SARS-CoV-2 [2]. However, the neurological effect of A. annua and its compounds are poorly understood. We hypothesize that A. annua extracts and artemisinin will provide protection against oxidative stress in mouse neuronal Neuro2A cells. Superoxide dismutase 1 (SOD1) is an anti-oxidant enzyme that protects against oxidative damage [3]. Growth Arrest and DNA Damage-inducible 45 alpha (Gadd45a) is involved in DNA repair and is a common biomarker for DNA damage[4]. SOD1 …

Building Better Biofuel Crops: A Field Evaluation Of Transgenic Populus Modified To Improve Feedstock Performance For Bioenergy Use, Molli Elisabeth Coombs

Graduate Theses, Dissertations, and Problem Reports (ETD)

A transition away from fossil fuel use is necessary for the future of energy production, and biofuels are a renewable energy option that can mitigate the impacts of fossil fuels through lowered carbon emissions and possible carbon sequestration. In order to successfully compete with fossil fuels, the production of biofuels must be sustainable and cost effective. Populus species are a biofuel crop used for bioenergy conversion from lignocellulosic biomass that have been proposed for use in feedstock plantations on marginal lands, which would avoid competition with agricultural production. Two challenges of feedstock production being faced are recalcitrance to chemical processing, …

Reducing Food Scarcity: The Benefits Of Urban Farming, S.A. Claudell, Emilio Mejia

Journal of Nonprofit Innovation

Urban farming can enhance the lives of communities and help reduce food scarcity. This paper presents a conceptual prototype of an efficient urban farming community that can be scaled for a single apartment building or an entire community across all global geoeconomics regions, including densely populated cities and rural, developing towns and communities. When deployed in coordination with smart crop choices, local farm support, and efficient transportation then the result isn’t just sustainability, but also increasing fresh produce accessibility, optimizing nutritional value, eliminating the use of ‘forever chemicals’, reducing transportation costs, and fostering global environmental benefits.

Imagine Doris, who is …

Induction Of Ploidy Level On Three Patchouli (Pogostemon Cablin Benth) Cultivars By Colchicine In Vitro, Suseno Amien, Nikkita Putri Darmawan, Daniya Fathya

Jurnal Kultivasi

Patchouli plants produce essential oils and are used as a raw material and fixative agent for perfumes. The most widely cultivated patchouli plant in Indonesia is Aceh patchouli. Sexual propagation in Aceh patchouli plants is impossible as it does not flower. Genetic diversity can be elevated through another method, such as polyploidy induction using colchicine. This research aimed to evaluate the state-of-the-art application of polyploidization techniques as a breeding tool for callus-based explants. A completely randomized design with a factorial pattern was used in this experiment consisting of two factors, patchouli cultivars (Sidikalang, Tapak Tuan, and Lhokseumawe) and colchicine concentration …

Measuring The Physiological Effects Of Methylobacterium Oryzae Foliar Inoculation Onto Salt-Stressed Tomatoes Grown In A Greenhouse Semi-Hydroponic System, Collin Dice

Master of Science in Integrative Biology Theses

Salinity stress has been shown to improve hydroponic produce quality such as that of tomato but at the trade-off of produce yield. In order to improve demand for hydroponic produce, techniques that improve salinity tolerance could offset declines in yield without altering the improved quality of produce. In two separate trials, we tested whether foliar inoculation of the ACC deaminase-producing bacteria Methylobacterium oryzae CBMB20 improved salt tolerance in tomatoes grown in a semi-hydroponic system using an indeterminate variety exposed to 26mM NaCl (Trial 1) and a determinate variety exposed to 17mM NaCl (Trial 2). We also tested how salinity and …

Compositional Properties Of Flours And Starches From The Philippine National Seed And Industry Council-Registered Root Crops, Edgardo E. Tulin, Chinelo M. Cardaño, Anabella B. Tulin, Ma. Theresa P. Loreto, Ea Kristine Clarisse B. Tulin, Ma. Villa N. Yu

The Philippine Agricultural Scientist

Based in the Visayas State University, Philippines, the germplasm collection of the Philippine Root Crops Research and Training Center (PhilRootcrops) is home to several varieties that have not been fully characterized for their potential use in the production of functional foods. This study evaluated the compositional properties, amylose/amylopectin ratio, and glycemic index of flour and starches of 10 varieties of cassava (Manihot esculenta Crantz), sweet potato (Ipomoea batatas L. (Lam)), and taro (Colocasia esculenta L. Schott); 8 varieties of yam (Dioscorea alata L.); and 5 varieties of arrowroot (Maranta arundinacea L.), which was the recommended …

Laser Inscribed Graphene Aptasensor For Detection Of Apple Stem Pitting Virus, Yifan Tang

All Theses

Apple stem pitting virus (ASPV) is a latent RNA virus that could cause significant loss to apple production; early-stage field diagnosis could reduce the economic loss caused by ASPV infection. Biosensor is a promising user-friendly detection tool that could transduce biological or chemical interactions into electric signals. Among various types of biosensors, aptasensor, which use aptamers as recognition elements show potential as a high throughput, in-field test. The goal of this thesis is to develop an electrochemical aptasensor testing system for ASPV detection. The quality control study of laser inscribed graphene (LIG) based working electrode of the biosensor was conducted …

The Characterization Of Selected Α- And Β-Carbonic Anhydrases Of Arabidopsis Thaliana, Hiruni Weerasooriya

LSU Doctoral Dissertations

Carbonic anhydrases (CAs) are zinc-metalloenzymes that interconvert two inorganic carbon (Ci) species, CO₂ and HCO₃^-. In Arabidopsis thaliana, there are eight αCA genes, six βCA genes, three γCA genes, and two γCA-like genes. The majority of CA research in plants has focused on finding a link between CA activity and photosynthesis rates. Since the CA genes are expressed in different plant tissues and multiple CA isoforms are distributed among various organelles of the plant cell, I hypothesize that CAs facilitate CO₂ diffusion among cell compartments and maintain Ci pools for carbon-requiring reactions by interconverting …

Growth Optimization Of White Turmeric (Curcuma Zedoaria) Plantlets With Growth Regulators Gibberellins, Murgayanti, Fenny Dewi Nuroktavianti, Anne Nuraini

Jurnal Kultivasi

The addition of cytokinin to the multiplication of white turmeric (Curcuma zedoaria) seedlings in vitro proved effective in shoot multiplication, but the addition of high cytokinin concentrations could cause stunted shoots and stunted growth. The addition of the hormone gibberellins (GA3) is often used in tissue culture for shoot elongation, so increasing the viability of plantlets. The experiment aims to determine the effect of GA3 and obtain the best concentrations of GA3 consisting of 0.50, 1, and 1.5 ppm GA3 on optimizing the growth of zedoary plantlets. The experimental parameters included the number of shoots, roots, leaves, plantlet height, and …

Salve Regina University Hydroponic Growing Guide: Dolores Chive, Hanna E. Lloyd

Hydroponic Center

This Salve Regina Hydroponic Growing Guide describes the process of hydroponically growing Dolores Chives (Allium schoenoprasum) in a tower system. This grow guide is based on the research project completed by third year student, Hanna Lloyd, through the Hydroponic Practicum, during the 2023 spring semester. Dolores chives are an aromatic herb which grow as tall, thin, green, leaves. Chives thrive under direct light with nutrient-rich water, and propagate under grow lights in approximately 15 days. When grown in a hydroponic tower, chives can reach up to 12-20 inches in length. The following guide provides information on optimal pH, optimal nutrient …

Bright Lights Swiss Chard Hydroponic Grow Guide, Jayla M. Anderson

Hydroponic Center

This is a guide for growing Bright Lights variety of Swiss chard in the Hydroponic Lab. It states how the plant was grown from propagation, which system the plant was grown in, the plants optimal conditions (PPM, pH), time frame until fully grown, and average size of leaf.

Sequencing Antisense Transcriptome Of Populus Through Antisense/Sense Transcript Pair Enrichment, Emma V. Burke

Dissertations, Master's Theses and Master's Reports

Past transcriptome research on plants focused primarily on protein coding genes, and only recently researchers began looking into the non-protein coding regions that may play significant roles in gene regulation. Antisense RNA transcripts that are found naturally in the cell share complementary sequence with sense transcripts and have been shown to regulate expression of their sense counterparts. Since antisense RNA has been largely under-studied and difficult to sequence because of their low relative abundance, new methods are needed to target antisense RNA for efficient genome-wide profiling. To address this gap in methods to efficiently and cost effectively enrich antisense RNA …

Studi Pendahuluan Regenerasi Eksplan Teh Sebagai Upaya Percepatan Penyediaan Bibit Unggul Secara In Vitro, Intan Ratna Dewi Anjarsari, Erni Suminar, Murgayanti

Jurnal Kultivasi

Pembiakan generatif tanaman teh yang dilakukan dengan biji, sementara secara vegetatif dengan setek tunas yang mempunyai kelemahan, antara lain jumlah bibit yang dihasilkan terbatas, perlu waktu lama untuk menyeleksi pohon induk, dan bibit yang dihasilkan kurang optimal dalam penyerapan air dan unsur hara karena perakarannya dangkal sehingga kurang toleran terhadap kekeringan. Kultur jaringan menjadi salah satu alternatif dalam perbanyakan teh memperoleh klon teh unggul, seperti klon Seri Gambung 1-11, dalam jumlah banyak dan sifatnya yang seragam. Penelitian pendahuluan ini dilaksanakan di Laboratorium Kultur Jaringan Departemen Budidaya Pertanian Fakultas Pertanian UNPAD, mulai bulan Juni hingga Desember 2021. Penelitian terdiri dari dua …

Characterization Of Algerian Apricots (Prunus Armeniaca) Using Morphological And Pomological Markers, Kaouther Boutiti, Ines Bellil, Douadi Khelifi

Karbala International Journal of Modern Science

The aim of this study was to evaluate the diversity of an Algerian apricot germplasm. This Algerian apricot was characterized by a green-yellow skin, a red ground color, and a light orange flesh color in general. Besides, highly positive and negative significant correlations were revealed between the studied characters. Whereby, the principal component analysis explained 81% of the variability. Fruit, stone and leaves dimensions were the main features that explained evidentially the majority of variability. Moreover, the cluster analysis divided the accessions into two major groups. Thus, Algerian accessions selected in this study may have the potential to be used …

Analysis Effect Of Shade Level On The Physiological And Anatomical Characteristics Of Hybrid Phalaenopsis Orchid At The Acclimatization Stage, Ade Arisma Fauziah, Nintya Setiari, Endang Saptiningsih

Jurnal Kultivasi

Production of hybrid Phalaenopsis seedlings is generally applied by in vitro culture techniques. The final stage of in vitro culture is acclimatization. The acclimatization stage is crucial because the plantlets must adapt to the ex-vitro environment. Shade supports plantlet growth during the early stages of acclimatization. This study aims to determine the effect of shade level on the physiological and anatomical characteristics of the Phalaenopsis hybrid orchid at the acclimatization stage. The research used Phalaenopsis plantlet hybrid and shading level. Plantlets were shaded at 40%, 55%, and 70%. Parameters measured included: photosynthetic pigment content, number and area of leaves, number …

Effect Of Paclobutrazol On Growth And Root Morphology Of 12 Crossed Stevia In Vitro, Suseno Amien, Qurrota Aini, Noladhi Wicaksana

Jurnal Kultivasi

Stevia (Stevia rebaudiana Bertoni) is a low-calorie alternative sweetener. The superior varieties of Stevia in Indonesia are limited. Availability of seeds plays an important role in the Stevia plant breeding program for both the selection stage and the production of high-yielding varieties. Tissue culture is the best method of Stevia propagation, but the low adaptability of plantlets causes death in the acclimatization phase. The growth and root morphology of 12 crossbreed Stevia were evaluated. A Completely Randomized Design was used with factorial consisting of two factors were Stevia genotypes (STG1,7,8,10, SBG3,4,5,7,10, SGB2,3, and SBT11) and the plant growth regulator (PGR) …

Pengaruh Konsentrasi Benzylaminopurine Terhadap Pertumbuhan Eksplan Tunas Aksilar Rami Klon Lokal Wonosobo Secara In Vitro, Anne Nuraini, Eva Aprilia, Murgayanti, Asri Peni Wulandari

Jurnal Kultivasi

Saat ini, perbanyakan rami menggunakan rizoma sebagai bahan tanamnya, tetapi dalam produksinya membutuhkan waktu yang lama dan sebagai bahan tanam umur simpannya singkat. Kultur jaringan merupakan salah satu teknologi untuk mendapatkan bahan tanam yang seragam dan sehat dalam waktu yang singkat. Tujuan dilakukannya penelitian ini adalah untuk mengetahui pengaruh konsentrasi BAP terhadap pertumbuhan tunas aksilar pada rami klon lokal Wonosobo dan konsentrasi mana yang memberikan pengaruh terbaik. Percobaan dilakukan di Laboratorium Kultur Jaringan, Teknologi Benih, Fakultas Pertanian, Universitas Padjadjaran. Nodus batang dari rami klon lokal Wonosobo diklturkan pada media MS dengan penambahan berbagai konsentrasi BAP selama 8 minggu dan diamati …

Efektifitas Perbedaan Konsentrasi Bap Terhadap Pertumbuhan Planlet Pisang Cavendish Dengan Teknik Thin Cells Layer, Hidayati Karamina, Edyson Indawan, Fila Isti Kumala Agustina

Jurnal Kultivasi

Pisang murupakan komoditi dengan produksi paling tinggi di antara buah-buahan lainnya. Salah satu pisang yang diminati ialah Pisang Cavendish (Musa acuminata L.), namun pembibitan secara konvensional kurang memenuhi permintaan pasar. Salah satu alternatif untuk meningkatkan jumlah bibit pisang Cavendish adalah dengan perbanyakan tanaman secara in vitro. Teknik thin cell layer (TCL) merupakan teknik dalam kultur jaringan dengan mengiris tipis bagian tanaman yang dapat memperbanyak jumlah tunas planlet pisang Cavendish. Penelitian ini bertujuan untuk mengetahui konsentrasi BAP yang cocok untuk pertumbuhan planlet pisang Cavendish dengan menggunakan teknik TCL. Penelitian ini menggunakan rancangan acak lengkap (RAL) dengan 5 perlakuan dan 5 ulangan. …

Increasing The Resilience Of Plant Immunity To A Warming Climate, Jong Hum Kim, Christian Castroverde, Shuai Huang, Chao Li, Richard Hilleary, Adam Seroka, Reza Sohrabi, Diana Medina-Yerena, Bethany Huot, Jie Wang, Sharon Marr, Mary Wildermuth, Tao Chen, John Macmicking, Sheng Yang He

Biology Faculty Publications

Extreme weather conditions associated with climate change affect many aspects of plant and animal life, including the response to infectious diseases. Production of salicylic acid (SA), a central plant defence hormone, is particularly vulnerable to suppression by short periods of hot weather above the normal plant growth temperature range via an unknown mechanism. Here we show that suppression of SA production in Arabidopsis thaliana at 28 °C is independent of PHYTOCHROME B (phyB) and EARLY FLOWERING 3 (ELF3), which regulate thermo-responsive plant growth and development. Instead, we found that formation of GUANYLATE BINDING PROTEIN-LIKE 3 (GBPL3) defence-activated biomolecular condensates (GDACs) …

Hydroponic Lab Growing Guide Bell Peppers, Zachary N. Russell

Hydroponic Center

This is a guide for growing Bell Peppers in the Hydroponic Lab. It states how the plant was grown from propagation, which system the plant was grown in, the plants optimal conditions (PPM, pH), and time frame until fully grown.

Sugar Snap Organic Pea Hydroponic Grow Guide, Levi Mitchell

Hydroponic Center

Hydroponic Grow Guide for Sugar Snap Organic Peas in a MGS hydroponic system. Hydroponically grown Sugar Snap Peas are a vine-structured plant which require over five feet of overhead height for the vines to grow their structure before fruiting peas. This grow guide covers the optimal nutrient range, optimal pH range, propagation and growing techniques, as well as special considerations for future projects involved with growing sugar snap peas.

Regulatory Mechanisms In Arabidopsis Embryogenesis, Sanjay Joshi

Theses and Dissertations--Plant and Soil Sciences

Plants have amazing regeneration properties with single somatic cells, or groups of cells able to give rise to fully formed plants. One means of regeneration is Somatic Embryogenesis (SE), by which an embryonic structure is formed that “converts” into a plantlet. Somatic embryogenesis has been used as a model for zygotic processes that are buried within layers of maternal tissues. Understanding mechanisms of somatic embryo induction and development are important as a more accessible model for seed development. We rely on seed development not only for most of our caloric intake, but also as a delivery system for engineered crops …

Characterizing Drought Adaptations, Phenotypic Plasticity, And Fixed Gene Expression Patterns Within Quercus, James K. Rauschendorfer

Dissertations, Master's Theses and Master's Reports

This dissertation was written on topics related to the genus Quercus with a primary focus on Quercus ellipsoidalis (northern pin oak) and Quercus rubra (northern red oak). Within this dissertation are chapters related to the setup of experimental common gardens within the Ford and Kellogg experimental forest, a literature review describing drought adaptations of Quercus sect. Lobatae (red oak group), identification of transcription factors within the Q. robur (English oak) and Q. rubra genomes, a study comparing leaf trait phenotypic plasticity of Q. ellipsoidalis and Q. rubra, and an RNA-seq experiment studying ecological speciation between Q. ellipsoidalis and Q. …

Multiplikasi Tunas Tanaman Temu Putih Pada Berbagai Jenis Karbohidrat Dan Sitokinin Secara In Vitro, Murgayanti, Adelia Anissa Putri, Anne Nuraini

Jurnal Kultivasi

Permasalahan utama dari perbanyakan tanaman temu putih (Curcuma zedoaria) secara konvensional adalah penggunaan bahan tanam berupa rimpang yang memiliki masa dormansi 2-3 bulan. Perbanyakan in vitro menjadi alternatif untuk membuat perbanyakan temu putih secara cepat dan dalam jumlah banyak, namun masih belum banyak penelitian rekayasa media in vitro berupa penambahan karbohidrat dan sitokinin dalam media. Percobaan ini bertujuan untuk mengetahui respon pertumbuhan dan multiplikasi eksplan C. zedoria terhadap 3 jenis karbohidrat, yaitu sukrosa, glukosa dan amilum dengan konsentrasi 2% dan 4% yang dikombinasikan dengan 2 jenis sitokinin, yaitu Benzyl Amino Purine (BAP) 2 ppm dan Thidiazuron (TDZ) 1,5 ppm. Percobaan …

First Detection Of Naturally Introgressed Bt Cry1ab In Asian Corn Borer [Ostrinia Furnacalis (Guenée)] - Resistant Traditional Maize (Silangan) In The Philippines, Merdelyn T. Caasi-Lit, Eureka Teresa C. Ocampo, Artemio Salazar, Jefferson Paril, Bryan Novio, Bernard Panabang, Angelyn Marta Marmeto

The Philippine Agricultural Scientist

Resistance against insect pests is one of the most promising and highly favored characteristics of an economically important crop. In the Philippines, the Asian corn borer (ACB), Ostrinia furnacalis (Guenée), is the most destructive insect pest of maize. The discovery of Bacillus thuringiensis and the Bt toxin, which led to the development of Bt corn, effectively controlled this pest. In this study, four traditional varieties of maize that showed resistance against ACB were tested for the presence of Bt Cry1Ab protein. Out of these four, a traditional variety from San Carlos City, Pangasinan, which was initially thought to have natural …

Epinasty Accompanies Potassium Nitrate-Induced Flower Bud Break In 'Carabao' Mango [Research Note], Ulysses Besas, Calixto Protacio

The Philippine Agricultural Scientist

The hypothesis that potassium nitrate application promotes epinasty in ‘Carabao’ mango through increased ethylene production was investigated. The degree of drooping, apical primordium growth as affected by shoot ethylene and levels after potassium nitrate spraying were monitored. Evidence presented established for the first time in ‘Carabao’ mango that epinasty occurred just before flower emergence, coinciding with visible bud break, and extended up to 18 days, marking floral anthesis. The possible reasons could be the higher levels of ethylene at 0.31% and earlier increase of ethylene in the shoot apex at four hours and apical primordium growth. Increased ethylene levels at …

Spectral Lights Based Treatment Enhanced Biomass Accumulation And Secondary Metabolites Production In Callus Culture Of Citrus Reticulata, Faiza Anum, Naveed Iqbal Raja, Tahira Sultana, Abeer Kazmi, Amir Ali, Bushra Qayyum, Anza Afzal, Aneela Nijibat, Zia-Ur-Rehman Mashwani, Abeer Kazmi

The Philippine Agricultural Scientist

Citrus reticulata is a common fruit, belongs to the family Rutaceae. It contains terpenes, phenolics, flavonoids, and vitamin C in conjugation with sugars, amino acids, minerals, organic acids and other biologically important compounds. Application of light elicitation strategies in in vitro plant cultures is acquiring more interest for their potential in feasible biomass accumulation and therapeutically important secondary metabolites production. The present study was designed to investigate the effects of different monochromatic lights (white, red, blue, green, and yellow) on the proliferation and secondary metabolites accumulation in callus cultures of Citrus reticulata raised in response to treatment with AgNPs and …

Marker-Assisted Selection To Determine The Introgression Of Rpv-3 Mediated Downy Mildew Resistance In 'Chambourcin' X 'Caberenet Sauvignon' Grapevine Population, Kavya Sri Tummala

Graduate Theses/Dissertations

Downy mildew caused by the fungus, Plasmopara viticola in the grapes is one of the major diseases affecting crop yield throughout the world. Breeding grapes via conventional methods for the downy mildew resistance will take approximately 25-30 years to fully evaluate and release new cultivars. Because of the long breeding cycle in woody plant species like grape, developing DNA markers linked to genes or quantitative trait loci (QTLs) for horticultural traits can greatly accelerate the breeding process and allow a much more accurate selection of progeny. This study aims to determine the presence of resistance in the 267 F1 genotypes …

Effects Of Zeolite On Agronomic And Biochemical Traits And Yield Components Of Zea Mays L. Cv Simone Under Drought Stress Condition, Mehri Salehi, Mahdi Zare, Forood Bazrafshan, Ahmad Aien, Bahram Amiri

The Philippine Agricultural Scientist

One of the new strategies to increase the effectiveness of chemical fertilizers, prevent the waste of chemical fertilizers, and increase the yield of agricultural products, is the use of natural compound such as zeolite. This study was conducted to investigate the effects of zeolite (0, 5, 10, and 15 t ha^-1) on agronomic and biochemical responses as well as yield components of maize (cv. Simon) under normal (90% field capacity), moderate (75% FC), and severe (60% FC) drought stress conditions during 2017-2019. The results showed that moderate and severe drought stress significantly decreased plant height (10.9% and 19.7%, …