Biology Commons^™

The Phylogenetics Of Tachinidae (Insecta: Diptera) With An Emphasis On Subfamily Structure, Daniel J. Davis

Browse all Theses and Dissertations

The parasitoid flies of the Tachinidae family are an important and diverse (>10,000 species) lineage of insects. However, tachinids are not well studied partially due to their confusing classification and taxonomy. DNA sequences were obtained from twenty tribal representatives of Tachinidae, along with eight outgroups in order to phylogenetically reconstruct the superfamilial, subfamilial and tribal relationships of Tachinidae. Seven gene regions of six genes (18S, 28S, COI, CAD, Ef1a, and TPI) were sequenced for each taxon (6214 bp total). Both maximum likelihood and Bayesian methods were used to infer phylogenies. The Sarcophagidae and Oestridae were usually reconstructed as monophyletic. …

Aquatic Heteroptera Of The Lake Manguao Catchment, Palawan And New Rank Of Rhagovelia Kawakamii Hoberlandti Hungerford & Matsuda 1961, Hendrik Freitag, Herbert Zettel

Biology Faculty Publications

Results of an inventory of the fauna of aquatic and semiaquatic true bugs (Insecta: Hemiptera) of small streams in a lake catchment of northern Palawan are presented. Twenty-one species were recorded. Taxonomic and ecological notes, distribution and collection sites are given for each identified taxon. Rhagovelia hoberlandti Hungerford & Matsuda 1961 is newly ranked as a subspecies of R. kawakamii (Matsumura 1913): Rhagovelia kawakamii hoberlandti Hungerford & Matsuda 1961, stat.n. Cercotmetus asiaticus Amyot & Serville 1843 is recorded for the first time from the Philippines. Endemic and few undescribed taxa are discussed. Additional environmental data of the sampled waters are …

Taxonomic Revision Of True Morels (Morchella) In Canada And The United States, Michael Kuo, Damon R. Dewsbury, Kerry O'Donnell, M. Carol Carter, John David Moore, Stephen A. Renner, Jean-Marc Moncalvo, Stephen A. Canfield, Steven L. Stephenson, Andrew S. Methven, Thomas J. Volk

Faculty Research & Creative Activity

Recent molecular phylogenetic studies have revealed the existence of at least 50 species of Morchella worldwide and demonstrated a high degree of continental endemism within the genus. Here we describe 19 phylogenetic species of Morchella from North America, 14 of which are new (M. diminutiva, M. virginiana, M. esculentoides, M. prava, M. cryptica, M. frustrata, M. populiphila, M. sextelata, M. septimelata, M. capitata, M. importuna, M. snyderi, M. brunnea and M. septentrionalis). Existing species names (M. rufobrunnea, M. tomentosa, M. punctipes and M. angusticeps) are applied to four phylogenetic species, and formal description of one species (M. sp. "Mel-8") is …

Taxonomic Revision Of True Morels (Morchella) In Canada And The United States, Michael Kuo, Damon Dewsbury, Kerry O'Donnell, M. Carter, John Moore, Stephen Renner, Jean-Marc Moncalvo, Stephen Canfield, Steven Stephenson, Andrew Methven, Thomas Volk

Faculty Research & Creative Activity

Recent molecular phylogenetic studies have revealed the existence of at least 50 species of Morchella worldwide and demonstrated a high degree of continental endemism within the genus. Here we describe 19 phylogenetic species of Morchella from North America, 14 of which are new (M. diminutiva, M. virginiana, M. esculentoides, M. prava, M. cryptica, M. frustrata, M. populiphila, M. sextelata, M. septimelata, M. capitata, M. importuna, M. snyderi, M. brunnea and M. septentrionalis). Existing species names (M. rufobrunnea, M. tomentosa, M. punctipes and M. angusticeps) are applied to four phylogenetic species, and formal description of one species (M. sp. "Mel-8") is …

Beyond Building A Tree: Phylogeny Of Pitvipers And Exploration Of Evolutionary Patterns, Allyson Fenwick

Electronic Theses and Dissertations

As generic and higher-scale evolutionary relationships are increasingly well understood, systematists move research in two directions: 1) understanding specieslevel relationships with dense taxon sampling, and 2) evaluating evolutionary patterns using phylogeny. In this study I address both foci of systematic research using pitvipers, subfamily Crotalinae. For direction one, I evaluate the relationships of 96% of pitvipers by combining independent sets of molecular and phenotypic data. I find the inclusion of species with low numbers of informative characters (i.e. less than 100) negatively impacts resolution of the phylogeny, and the addition of independent datasets has no effect on or a small …

Determining The Composition Of The Dwelling Tubes Of Antarctic Pterobranchs, Lukasz J. Sewera

Honors Projects

Pterobranchs are a group of marine invertebrates within the Hemichordata, which share characteristics with both chordates and echinoderms.  Pterobranchs live in colonies of secreted tubes, coenicia, which are composed of a gelatinous material of unknown composition.  Visually, the tubes appear similar to the tunic of tunicates, a group of invertebrates within the Chordata. The nonproteinaceous tunic of tunicates is composed of cellulose, which is unusual.  The goal of this study was to determine the composition of the pterobranch coenicium. Some aspects of pterobranch phylogeny are still unclear even after multiple molecular and morphological studies.  Identification of any new shared characteristics …

Anolis Chrysolepis Duméril And Bibron, 1837 (Squamata: Iguanidae), Revisited: Molecular Phylogeny And Taxonomy Of The Anolis Chrysolepis Species Group, Annelise B. D'Angiolella, Tony Gamble, Teresa C. S. Avila-Pires, Guarino R. Colli, Brice P. Noonan, Laurie J. Vitt

Biological Sciences Faculty Research and Publications

The Anolis chrysolepis species group is distributed across the entire Amazon basin and currently consists of A. bombiceps and five subspecies of A. chrysolepis. These lizards are characterized by moderate size, relatively narrow digital pads, and a small dewlap that does not reach the axilla. We used the mitochondrial gene ND2 to estimate phylogenetic relationships among putative subspecies of A. chrysolepis and taxa previously hypothesized to be their close relatives. We also assessed the congruence between molecular and morphological datasets to evaluate the taxonomic status of group members. On the basis of the two datasets, we present a new …

Evolutionary History And Taxonomy Of The Cuscuta Umbellata Complex (Convolvulaceae): Evidence Of Extensive Hybridization From Discordant Nuclear And Plastid Phylogenies, Mihai Costea, Saša Stefanović

Biology Faculty Publications

The Cuscuta umbellata complex is one of the 15 major clades recently circumscribed in C. subg. Grammica. Most of its members occur in North AMerican and the Caribbean (C. desmouliniana, C. lacerata, C. lacerata, C. leptantha, C. liliputana, C. odontolepsis, C. polyanthemos, C. tuberculata, C. umbellata), but three species (C. acuta, C. membranacea, C. umbellata) grow in South America, and one (C. hyalina) is found as a native species in India, Pakistan and Eastern to South Africa. Basic morphology, scanning electron microscopy and …

Foraging Strategies Are Related To Skull Morphology And Life History Traits Of Melanerpes Woodpeckers, David L. Leonard Jr., Julie A. Heath

Biology Faculty Publications and Presentations

Links between morphology and foraging strategies have been well established for many vertebrate groups. Foraging strategies of Melanerpes woodpeckers are especially variable, with at least six species being proficient flycatchers; the remainder of the better known species do not flycatch. Our objective was to examine variation in foraging tactics as it relates to skull morphology and other life history traits among these species to better understand the biology of these diverse woodpeckers. We measured eight skull characters from 241 individuals representing 19 species, but focused on eight species for which we had the most data. We used the log-geometric mean …

Infrageneric Relationships Within Collomia (Polemoniaceae), Eric Stewart Green

Theses and Dissertations

Traditional evolutionary models depict evolution as a bifurcating pattern with a single ancestor diverging to form two lineages. However, reticulate species resulting from hybridization and recombination have unique histories shared with two independent lineages, not one. Accounting for the genetic histories of reticulate species increases the power and ability to recover biologically meaningful relationships. The genus Collomia (Polemoniaceae) is used to explore issues of reticulation and the importance of accounting for gene histories in a phylogenetic analysis. The issue of reticulation within species trees is discussed with a multilabeled, network approach being explored to better represent the genus's evolutionary history. …

Taxonomy And Applied Biogeography Of Mongolian Stoneflies (Insecta: Plecoptera), Sarah Walker Judson

Theses and Dissertations

Since the early 1900s, efforts have been made to catalogue the stoneflies of Mongolia. Taxonomic work from 1960 to 1980 greatly expanded basic lists of stoneflies in Mongolia, but no comprehensive survey or synthesis of this dispersed literature has been completed. In conjunction with a modern survey of the aquatic insects of Mongolia, we collected Plecoptera on a series of expeditions to the Selenge (north) and Altai (west) regions of Mongolia. A total of 48 species distributed in 24 genera and 8 families were documented, including 3 of the 5 Mongolian endemics, 2 new species records for Mongolia, and 1 …

Teaching Species, Mark W. Ellis, Paul G. Wolf

Biology Faculty Publications

A clear understanding of the term "species" is fundamental to the subject of evolution. However, introductory textbooks often fail to address this topic until one of the later chapters, after having used the term species in all preceding chapters. Furthermore, definitions of terms critical to a clear understanding of this subject are often vague or absent in chapters on species concepts. We feel the popular notion of a "species problem" has been unnecessarily inflated by this less-than-effective educational approach. Clearly addressing this essential subject at the beginning of a course on evolution will prepare students to learn the details and …

Molecular Fingerprinting Of Some Clinically Significant Nocardia And Related Strains By Restriction Polymorphism Ribosomal Rna Analyses, Kami̇l Işik, Michael Goodfellow

Turkish Journal of Biology

Fifty-three Nocardia strains were the subject of a restriction polymorphic ribosomal RNA analysis (ribotyping) designed to distinguish between representatives of clinically significant species and related strains. The organisms were assigned to 19 groups using a combination of EcoRV gene restriction endonuclease patterns and a digoxigenin-labelled Streptomyces violaceoruber TK21 rDNA probe. Each ribotype group contained 4 to 13 restriction fragments that ranged in size from 20.7 to 0.9 kb. The N. brasiliensis, N. crassostreae, N. farcinica, N. otitidiscaviarum, and N. seriolea strains showed distinct ribotype patterns. Unique banding patterns were also seen for the type strains of N. brevicatena, N. carnea, …

Determination Of The Relationship Between Some Centaurea Species Based On Sds-Page, Tuna Uysal, Emi̇ne Arslan, Osman Tugay, Kuddi̇si̇ Ertuğrul

Turkish Journal of Biology

The protein patterns of 47 Centaurea species from Turkey were obtained using SDS-PAGE methods. Relationships between Centaurea species and related genera were evaluated via use of a dendrogram. SDS-PAGE provided protein profiles for an important and applicable selection within Centaurea, particularly for the section Cheirolepis and its relatives. We determined that the technique could be used to resolve taxonomic and evolutionary problems in the genus Centaurea, as most of the Centaurea species studied exhibited special protein profiles and patterns.

Systematics And Biogeography Of The Didymopanax Group Of Schefflera (Araliaceae), Pedro Fiaschi

Theses and Dissertations

Schefflera is the largest genus in the angiosperm family Araliaceae, with about 900 species, of which c. 300 belong to five subgeneric groups in the Neotropical region. Previous phylogenetic studies of Schefflera have been limited to a small number of species from this region, and very little is know about phylogenetic relationships in the Brazilian-centered Didymopanax group of this genus. Therefore, to gain a better understanding of the diversity and evolution of the Didymopanax group of Schefflera, I investigated the systematics of these plants in the broader context of the entire Neotropical clade. The main goals were (1) to investigate …

Parallel Shifts In Ecology And Natural Selection In An Island Lizard, Ryan Calsbeek, Wolfgang Buermann, Thomas B. Smith

Dartmouth Scholarship

Natural selection is a potent evolutionary force that shapes phenotypic variation to match ecological conditions. However, we know little about the year-to-year consistency of selection, or how inter-annual variation in ecology shapes adaptive landscapes and ultimately adaptive radiations. Here we combine remote sensing data, field experiments, and a four-year study of natural selection to show that changes in vegetation structure associated with a severe drought altered both habitat use and natural selection in the brown anole, Anolis sagrei.

Results: In natural populations, lizards increased their use of vegetation in wet years and this was correlated with selection on limb length …

A Primitive Aphidiine Wasp In Albian Amber From Spain And A Northern Hemisphere Origin For The Subfamily (Hymenoptera: Braconidae: Aphidiinae), Jaime Ortega-Blanco, Daniel J. Bennett, Xavier Delclòs, Michael S. Engel

Faculty Publications

A description of a new genus and species of braconid, Archephedrus stolamissus, from Early Cretaceous (Albian) amber from Moraza-Peñacerrada I (Spain) is here provided. This is the first fossil Aphidiinae described in Cretaceous amber. The fossil has some typical characters of the subfamily but possesses a unique assemblage of characters among aphidiines, such as a fairly robust abdomen, with a more pronounced articulation between the first and second, instead of the second and third, metasomal segments, as well as several wing venational traits. The distribution of this and other aphidiine fossils, as well as their putative phylogenetic placement as …

Wolf Spiders Of The Pacific Region: The Genus Zoica (Araneae, Lycosidae), Volker W. Framenau, James W. Berry, Joseph A. Beatty

Scholarship and Professional Work - LAS

The wolf spider genus Zoica Simon 1898 is currently known only from the Indo-Australasian region, including India in the west to northern Western Australia and Papua New Guinea in the east. Here we extend the known distribution of the genus into the Pacific region by describing two new species, Z. carolinensis new species from the Caroline Islands, Federated States of Micronesia, and Z. pacifica new species from the Republic of the Marshall Islands.

The Pholcid Spiders Of Micronesia And Polynesia (Araneae, Pholcidae), Joseph A. Beatty, James W. Berry, Bernhard A. Huber

Scholarship and Professional Work - LAS

Records of pholcid spiders from Micronesia and Polynesia are presented, along with records from Indonesia and parts of Melanesia. Nineteen species representing eleven genera are included. An illustrated key for Pacific pholcids is provided. Two species and one genus are not yet known from Micronesia or Polynesia, but are included in the key because they may occur there. Seven species are widespread synanthropic or anthropophilic species, two species are widespread native species, and nine species are endemics of one or several neighboring islands. Distribution maps include only specimens we have seen, not literature records.

Rana Ocellata Linnaeus, 1758 (Currently Leptodactylus Ocellatus; Amphibia, Anura): Proposed Conservation Of Usage Of The Specific Name By The Designation Of A Neotype, W. Ronald Heyer, Ulisses Caramaschi, Rafael O. De Sá

Biology Faculty Publications

The purpose of this application, under Article 75.6 of the Code, is to conserve the usage of the specific name of Rana ocellata Linnaeus, 1758 for a species of leptodactylid frog from South America by the designation of a neotype. Prevailing usage of the name is threatened by the identity of the type specimen which is a different species than that which is currently known as Leptodactylus ocellatus. It is proposed that all name-bearing types be set aside and a neotype designated in accord with prevailing usage.

Systematics Of The Sympetrine Dragonflies With Emphasis On The Phylogeny, Taxonomy, And Historical Biogeography Of The Genus Sympetrum (Odonata: Libellulidae), Erik M. Pilgrim

Biology

Within dragonflies and damselflies, the family Libellulidae is the largest. The systematics have never been analyzed in a phylogenetic context. Using both molecular and morphological characters, this dissertation is the first study to address the phylogenetics of the Libellulidae, the phylogenetics and historical biogeography of Sympetrum, and several species-level disputes within Sympetrum. Phylogenetic study of the family Libellulidae revealed that many of the libellulid subfamilies (Brachydiplactinae, Leucorrhininae, Sympetrinae, Trameinae, Trithemistinae, and Urothemistinae) were paraphyletic. Wing venation characters were not useful for delineating the hierarchy of taxa within Libellulidae. Study of the systematics of Sympetrum shows that S. navasi …

The Amphibian Tree Of Life, Darrel R. Frost, Taran Grant, Julián Faivovich, Raoul H. Bain, Alexander Haas, Célio F.B. Haddad, Rafael O. De Sá

Biology Faculty Publications

The evidentiary basis of the currently accepted classification of living amphibians is discussed and shown not to warrant the degree of authority conferred on it by use and tradition. A new taxonomy of living amphibians is proposed to correct the deficiencies of the old one. This new taxonomy is based on the largest phylogenetic analysis of living Amphibia so far accomplished. We combined the comparative anatomical character evidence of Haas (2003) with DNA sequences from the mitochondrial transcription unit H1 (12S and 16S ribosomal RNA and tRNAValine genes, ø 2,400 bp of mitochondrial sequences) and the nuclear genes histone H3, …

The Biology Of Canadian Weeds. 131. Polygonum Aviculare L., Mihai Costea, François J. Tardif

Biology Faculty Publications

A review and assessment of biological information as well as personal data are provided for Polygonum aviculare in Canada. The species has been revised taxonomically and the six subspecies that occur in Canada are presented. Three of the subspecies, P. aviculare subsp. aviculare, P. aviculare subsp. neglectum and P. aviculare subsp. depressum are weeds introduced to Canada from Europe. A fourth subspecies, P. aviculare subsp. buxiforme is apparently native to North America. The geographical distribution of the latter four subspecies is very wide. Plants exhibit a high phenotypic plasticity and genetic variability, and they easily adapt to a multitude …

The Agathidinae (Insecta: Hymenoptera: Braconidae) Of Sakhalin And The Kuril Islands, Michael J. Sharkey, Daniel J. Bennett

Faculty Publications

Recent collecting on Sakhalin and the Kuril Islands, during joint U.S., Russian, and Japanese surveys known as the International Kuril and Sakhalin Island Projects, has resulted in range extensions for 10 species in the braconid subfamily Agathidinae and 17 new taxon records for islands in the Kuril chain, Sakhalin, and Moneron. In addition to a check list of the 19 species of Agathidinae presently known to occur on Sakhalin and the Kuril Islands, a generic key and updated keys to the species of Agathis Latreille, 1804, Bassus Fabricius, 1804, and Coccygidium Saussure, 1892 are provided for the region at large …

Body Mass Of Late Quaternary Mammals (Data Set), Felisa A. Smith, S. Kathleen Lyons, S.K. Morgan Ernest, Kate E. Jones, Kansas State University, Tamar Dayan, Pablo A. Marquet, James H. Brown, John P. Haskell

School of Biological Sciences: Faculty Publications

The purpose of this data set was to compile body mass information for all mammals on Earth so that we could investigate the patterns of body mass seen across geographic and taxonomic space and evolutionary time. We were interested in the heritability of body size across taxonomic groups (How conserved is body mass within a genus, family, and order?), in the overall pattern of body mass across continents (Do the moments and other descriptive statistics remain the same across geographic space?), and over evolutionary time (How quickly did body mass patterns iterate on the patterns seen today? Were the Pleistocene …

The Biology Of Canadian Weeds. 126. Amaranthus Albus L., A. Blitoides S. Watson And A. Blitum L., Mihai Costea, François J. Tardif

Biology Faculty Publications

A review of biological information is provided for three species of the genus Amaranthus: A. albus L., A. blitoides S. Watson and A. blitum L. The last species has been revised taxonomically and a new subspecies for Canada is presented—A. blitum subsp. emarginatus (Moq. ex Uline & Bray) Carretero, Munoz Garmendia & Pedrol. Amaranthus albus and A. blitoides are native to the U.S.A. and introduced to Canada. Both species are annual ruderal and agrestal weeds. During the past 100 yr the two species have spread across most provinces of Canada, but the greatest frequency and abundance have been …

On Water Bears, Frank A. Romano Iii

Research, Publications & Creative Work

Tardigrades, or “water bears” are microscopic invertebrates that require water in their environment and are found in freshwater, marine and terrestrial habitats. The morphology and phylogeny of this “little known phylum” is described as are ways the naturalist might collect water bears. Examples of species distributions in different locations in the southeastern USA are given.

A Revision Of The Silkmoth Genus Samia, Richard Peigler, Stefan Naumann

Faculty Books

"The authors have collaborated to produce this taxonomic revision and compilation on the splendid moths and caterpillars of the genus Samia, of which 19 species are now known to science. All species are shown in full color. For centuries, colorful and traditional textiles have been woven from their silk on handlooms in India, Bhutan, and China, but with improved technology and globalization, this form of wild silk increasingly attains a higher rank in the world market....

Typing Of Some Clinically Significant Nocardia Strains Using A Digoxigenin-Labelled Rdna Gene Probe, Kami̇l Işik, Nevzat Şahi̇n, Ergi̇n Kari̇ptaş, Michael Goofellow

Turkish Journal of Biology

In this study, ribotyping (restriction polymorphism ribosomal RNA analyses) was applied as a taxonomic tool for bacteria belonging to the genus Nocardia. A total of 21 Nocardia strains were clearly distinguished using a combination of EcoRV gene restriction endonuclease patterns together with a digoxigenin-labelled Streptomyces violaceoruber TK21 rDNA probe. Five distinct ribotypes were identified, and each ribotype contained 4 to 8 restriction fragments ranging in size from 1.2 to 20.7 kb. The evaluation of the results showed that N. brasiliensis, N. farcinica, N. otitidiscaviarum and N. seriolea are taxonomically well-established species, except N. pseudobrasiliensis. Therefore, it can be concluded that …

Stem Morphology And Anatomy In Amaranthus L. (Amaranthaceae)—Taxonomic Significance, Mihai Costea, Darleen A. Demason

Biology Faculty Publications

The range of variation within the genus Amaranthus L. (Amaranthaceae) is described for a number of stem characters including: morphology, epidermis, primary stem vasculature and mechanism of secondary growth. The results provide new characters (phyllotaxy, complexity of leaf vascular supply and relative amount of secondary growth) that support (1) a new infrageneric classification (subgenus Amaranthus vs subgenus Albersia (Kunth)Gren. & Dodr.), and (2) the separation within the “hybridus” complex of cultivated amaranths (A. caudatus L., A. cruentus L., and A. hypochondriacus L.) from their presumed wild ancestors (A. hybridus L. subsp. quitensis (Kunth) Costea & Carretero, …