Biology Commons^™

Human Adaptation And Morphological Variation: Expanding Diversity In Anatomy Curriculum, Jordan Cass, Cooker Storm

Seaver College Research And Scholarly Achievement Symposium

Introduction: The recent upturn in our nation’s socio-political conversation has fueled interest in ensuring that college curricula is diverse and inclusive. Because human anatomy is ubiquitous across colleges, it may be a valuable avenue to purposefully incorporate topics of diversity in a way that positively impacts our socio-cultural relationships. Providing students with a scientific understanding of our visible differences may mitigate subconscious bias when we see others who have different features. Purpose: We investigated the biogeographical factors that contribute to the morphological variability of the face, hair, and body size; with the secondary aim of developing diverse and …

Morphological Changes Of The Asian Shore Crab Across Latitudes, Ainslee Mcmullin, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

The Asian shore crab, Hemigrapsus sanguineus , is an invasive species that has rapidly spread across the Eastern United States coastline. First observed in North America in 1988, its range currently extends from Maine to North Carolina. H. sanguineus has adapted very well to this region and has displaced several native species as the dominant crab in rocky intertidal habitats. Although the Asian shore crab’s biology and interactions with native species has been well studied, larger scale impacts (economic, potential further spread, community ecology, etc.) are under researched. We collected specimen samples of H. sanguineus throughout its entire East coast …

Getting To The Root Cause: The Genetic Underpinnings Of Root System Architecture And Rhizodeposition In Sorghum, Farren Smith

Graduate Theses, Dissertations, and Problem Reports (ETD)

Plants are some of the most diverse organisms on earth, consisting of more than 350,000 different species. To understand the underlying processes that contributed to plant diversification, it is fundamental to identify the genetic and genomic components that facilitated various adaptations over evolutionary history. Most studies to date have focused on the underlying controls of above-ground traits such as grain and vegetation; however, little is known about the “hidden half” of plants. Root systems comprise half of the total plant structure and provide vital functions such as anchorage, resource acquisition, and storage of energy reserves. The execution of these key …

Learning To Swim: An Exploration Of The Terrestrial To Aquatic Transition In Elapids (Squamata: Elapidae), Justin Lawrence Jacobs

Biology Dissertations - Archive

Elapidae is an extremely diverse family of venomous snake that have a nearly global distribution. To conquer such wide swaths of territory the initially fossorial snakes evolved many successful strategies pertaining to reproduction, locomotion, and predation techniques. Here I explore the multiple transitions of terrestrial to aquatic life through a high-density 3D geometric morphometric methodology conducted upon five large datasets of computed tomography (CT) data. This occurs primarily through the comparison of the genus of New World coralsnakes, Micrurus, with sea snakes of Hydrophis and Laticauda and is informed by a scale created to document and classify the disparate life …

These Fish Were Made For Walking: Morphology And Walking Kinematics In Balitorid Loaches, Callie Hendricks Crawford

Dissertations

Terrestrial excursions have been observed in multiple lineages of marine and freshwater fishes. These ventures into the terrestrial environment may be used when fish are searching out new habitat during drought, escaping predation, laying eggs, or seeking food sources. The physiological demands for life under water and on land are vastly different and require different functional adaptations. Fish with terrestrial excursions must be capable of dealing with the stresses of both aquatic and terrestrial environments for varying periods of time. To deal with these stresses, amphibious fishes exhibit many morphological and behavioral adaptations. These adaptations have led to a range …

Development Of Deep Learning Neural Network For Ecological And Medical Images, Shaobo Liu

Dissertations

Deep learning in computer vision and image processing has attracted attentions from various fields including ecology and medical image. Ecologists are interested in finding an effective model structure to classify different species. Tradition deep learning model use a convolutional neural network, such as LeNet, AlexNet, VGG models, residual neural network, and inception models, are first used on classifying bee wing and butterfly datasets. However, insufficient data sample and unbalanced samples in each class have caused a poor accuracy. To make improvement the test accuracy, data augmentation and transfer learning are applied. Recently developed deep learning framework based on mathematical morphology …

Philibaetis Gen. Nov., A New Genus From The Philippines (Ephemeroptera, Baetidae), Thomas Kaltenbach, Jhoana M. Garces, Jean-Luc Gattolliat

Biology Faculty Publications

Investigations of type material and new material from the Philippines (Luzon) revealed that Baetis luzonensis Müller-Liebenau, 1982 and B. realonae Müller-Liebenau, 1982 do not belong to Baetis Leach, 1815. A new genus, Philibaetis gen. nov., is described to accommodate both species and both are re-described based on larvae. The new genus is characterised by having a rectangular labrum with a submarginal row of long, simple setae on the dorsal surface and ventrally on lateral margins long, simple, spine-like setae, on anterolateral margins long, feathered setae and medially long, bifid setae and a partial, submarginal row of lanceolate setae. Both mandibles …

Focus Stacking Images Of Morphological Character States For Differentiating The Adults Of Ixodes Affinis And Ixodes Scapularis (Acari: Ixodidae) In Areas Of Sympatry, Robyn M. Nadolny, Marcée Toliver, Holly D. Gaff, John G. Snodgrass, Richard G. Robbins

Biological Sciences Faculty Publications

Adult females and males of Ixodes affinis and Ixodes scapularis are illustrated by focus stacking image photography, and morphological character states are described that reliably differentiate the two species. In conjunction with other environmental cues, such as the questing phenology of adults, these characteristics will enable the rapid identification of adults of either sex along the southern Coastal Plain of the United States, where these species are sympatric.

Polar Bear Behavior: Morphologic And Physiologic Adaptations, John P. Whiteman

Biological Sciences Faculty Publications

Polar bears possess morphologic and physiologic characteristics that reflect their terrestrial lineage as members of the bear family (Ursidae) as well as adaptations to the Arctic marine environment. Among marine mammals, they are the least adapted for aquatic life. They exhibit substantial seasonality in body mass, body condition, and many physiological functions, reflecting the annual cycle of both their Arctic sea ice habitat and the availability of their main prey, ringed seals. This hypercarnivorous diet has likely influenced the polar bear’s craniodental morphology and nutritional physiology. Similar to other marine mammal predators, polar bears exhibit a relatively high resting metabolic …

Taxonomic Review Of South American Butter Frogs: Phylogeny, Geographic Patterns, And Species Delimitation In The Leptodactylus Latrans Species Group (Anura: Leptodactylidae), Felipe De M. Magalhães, Mariana L. Lyra, Thiago R. De Carvalho, Diego Baldo, Francisco Brusquetti, Pamela Burella, Guarino R. Colli, Marcelo C. Gehara, Rafael O. De Sá, Et Al.

Biology Faculty Publications

The Leptodactylus latrans species group currently comprises eight medium- to large-sized frog species with a convoluted taxonomic history, particularly related to the specific limits of the L. latrans complex, and the species pair Leptodactylus chaquensis–Leptodactylus macrosternum. Their homogeneous external morphology and continental geographic distribution in South America have posed severe limitations to a comprehensive review, such that taxonomic consensus and species limits remain uncertain. This is further worsened by the presence of chromatic polymorphism among coexisting species that can hardly be distinguished by external morphology. Based on a large-scale geographic sampling including multilocus DNA analyses, and acoustic …

Interactive Effects Of Heat Stress And Pesticides Co-Exposure On Swimming Behavior, Oxidative Stress, Antioxidant Expression, And Redox Status In Common Goldfish (Carassius Auratus), Brittney Danielle Lacy

Theses and Dissertations

Aquatic ecosystems are inundated by environmental pesticides. This study, observed the dose-dependent effects of pesticides cocktail (metalachlor, linuron, isoproturon, tebucanazole, aclonifen, atrazine, pendimethalin, and azinphos-methyl) and elevated temperature (32 °C for 4-week exposure) on morphology of gills and kidneys, and expression of nitrotyrosine protein (NTP), dinitrophenyl protein (DNP), catalase (CAT), superoxidase dismutase (SOD), Na+/K+-ATPase, renin, and apoptosis in tissues of goldfish. Additionally, the effects on the free-swimming behavior were also observed. Histological analysis showed wide-spread damage in tissues at higher temperature and pesticides co-exposure. Immunohistochemical analysis demonstrated alterations in NTP, DNP, CAT and SOD expressions in tissues at higher temperature …

Classification Of Planetary Craters Using Outline-Based Morphometrics, Thomas J. Slezak, Jani Radebaugh, Eric H. Christiansen, Mark C. Belk

Faculty Publications

The morphologies of craters on planetary surfaces reveal clues about the geologic mechanisms by which they originate and subsequently evolve, as well as the materials and physical variables inherent to the environment in which they formed. We carried out a quantitative multivariate analysis of shape descriptors derived from the outlines of craters formed by volcanic processes on Mars, Io, and Earth and by impact cratering on the Moon using elliptic Fourier analysis (EFA) and the Zahn-Roskies (Z-R) shape function. Canonical variate analysis (CVA) was used to construct a statistical model of differences between the crater groups to classify …

Biological Flora Of The Tropical And Subtropical Intertidal Zone: Literature Review For Rhizophora Mangle L., Hudson R. Deyoe, Robert I. Lonard, Frank W. Judd, Richard Stalter, Ilka Feller

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Rhizophora mangle L. is a tropical and subtropical mangrove species that occurs as a dominant tree species in the intertidal zone of low-energy shorelines. Rhizophora mangle plays an important role in coastal zones as habitat for a wide range of organisms of intertidal food webs, as a natural barrier to coastal erosion, and as carbon sequestration. A review of mangrove literature has been performed, but a review specifically on red mangroves has not. The approach was to cover a broad range of topics with a focus on topics that have seen significant work since the 1970s. This review includes a …

Stabilizing Capability Of Gum Arabic On The Synthesis Of Poly(Styrene-Methylmethacrylate-Acrylic Acid) Latex For The Generation Of Colloidal Crystal Films, Ikhazuagbe Ifijen, Stanley Omorogbe, Muniratu Maliki, Ifeanyi Odiachi, Aireguamen Aigbodion, Esther Ikhuoria

Tanzania Journal of Science

This article describes the generation and characterization of colloidal crystals from particles of gum arabic (GA) and sodium dodecylbenzene sulfate (SDBS) emulsified poly(styrene methylmethacrylate-acrylic acid) (P(St-MMA-AA) latex. The colloidal latex was synthesized using GA and SDBS as the emulsifying agents and then used to generate colloidal crystal films via the vertical deposition technique. Dynamic light scattering analysis placed the average particle diameter, polydispersity and Zeta potential at about 122 nm, 0.014 and –36.20 mV for the as-synthesized GA emulsified terpolymer latex and 213 nm, 0.006, –35.60 mV for the SDBS emulsified terpolymer latex, respectively. Thermo-gravimetric analysis and differential scanning calorimetry …

Sexually Dimorphic Alterations In Brain Morphology Of Astrocyte Conditional System Xc- Knockout Mice, Gabrielle Emily Samulewicz

Biology - All Scholarship

Astrocytes play a vital role in orchestrating the precise brain wiring that occurs during development and are essential for maintaining homeostasis into adulthood. The cystine/glutamate antiporter, system xc-, in the central nervous system is especially abundant in astrocytes and itself is known to contribute importantly to the basal extracellular glutamate concentration as well as the intracellular and extracellular glutathione levels, either of which, if perturbed, could alter brain development and/or contribute to degeneration. Thus, to determine whether loss of astrocyte system xc- might alter brain morphology, I studied a conditional astrocyte system xc- knockout mouse (AcKO). Tissue was harvested from …

Sexually Dimorphic Alterations In Brain Morphology Of Astrocyte Conditional System Xc- Knockout Mice, Gabrielle Emily Samulewicz

Renée Crown University Honors Thesis Projects - All

Astrocytes play a vital role in orchestrating the precise brain wiring that occurs during development and are essential for maintaining homeostasis into adulthood. The cystine/glutamate antiporter, system xc-, in the central nervous system is especially abundant in astrocytes and itself is known to contribute importantly to the basal extracellular glutamate concentration as well as the intracellular and extracellular glutathione levels, either of which, if perturbed, could alter brain development and/or contribute to degeneration. Thus, to determine whether loss of astrocyte system xc- might alter brain morphology, I studied a conditional astrocyte system xc- knockout mouse (AcKO). Tissue was harvested from …

A New Genus And Two New Species Of Unarmed Hymenolepidid Cestodes (Cestoda: Hymenolepididae) From Geomyid Rodents In Mexico And Costa Rica, Scott Lyell Gardner, Altangerel Tsogtsaikhan Dursahinhan, Mariel Campbell, S. Elizabeth Rácz

Scott L. Gardner Publications

Two new cestodes of the family Hymenolepididae are described from two species of rodents of the family Geomyidae collected in Mexico and Costa Rica. One new species of Hymenolepis is described from Cratogeomys planiceps Merriam 1895 from near Toluca, Mexico and another that we allocate to a new genus is described from Heterogeomys heterodus (Peters, 1865) from near Irazú Volcano, Costa Rica. Hymenolepis s. str. includes those Hymenolepididae with an apical organ, with no hooks on suckers or apical organ, and three testes. Hobergia irazuensis n. gen., n. sp. includes a hymenolepidid with an apical organ, unarmed scolex, small …

Does Negative Frequency-Dependent Selection Maintain Gonopodial Asymmetry In A Livebearing Fish?, Mary-Elise Johnson

Undergraduate Honors Theses

How genetic variation is maintained in the face of strong natural selection is an important problem in evolutionary biology. Selection should erode genetic diversity, leading to more and more homogeneous populations. Yet in nature, we commonly see high degrees of genetic variation, even for traits that are important to fitness. Negative frequency-dependent selection, a balancing selective force that favors traits when they are rare but not when they are common, is a mechanism proposed to maintain polymorphisms in a population. However, there is little empirical data to demonstrate how negative frequency-dependent selection sustains variation. Xenophallus umbratilis is a bilaterally symmetrical …

The First Gynandromorph Of The Neotropical Bee Megalopta Amoena (Spinola, 1853) (Halictidae) With Notes On Its Circadian Rhythm, Erin Krichilsky, Álvaro Vega-Hidalgo, Kate Hunter, Callum Kingwell, Chelsey Ritner, William Wcislo, Adam Smith

All PIRU Publications

Gynandromorphy is an anomaly that results in an organism phenotypically expressing both male and female characteristics. Here we describe the first gynandromorph of the bee species Megalopta amoena (Spinola, 1853) (Halictidae, Augochlorini) and the second record of this anomaly within the genus Megalopta. Additionally, we analyzed the bee’s circadian rhythm, which has never before been quantified for a gynandromorph. The gynandromorph showed a deviant activity pattern; it was intermediate between that of the male and female M. amoena. Our results imply that the brains of bilateral gynandromorphs may have mixed sex-specific signaling. Based on four days of recording, …

The Undergraduate Student’S Guide To Geometric Morphometrics, Erika Crispo

Open Educational Resources

Embarking on a new research endeavor can be a daunting task. User guides, books, and published articles are written for an audience that already has some background experience in the field. Undergraduate students like you, who are at the very beginning of their research careers, often struggle to make sense of these documents. Furthermore, students like you often attempt to do so while balancing heavy course loads. Thus, I have written this document to help ease the burden so that you have more time to ponder the interesting scientific questions instead of digging through pages upon pages of documentation. I …

A Method For Removing Eggs Or Embryos From Preserved, Gravid Snakes That Minimizes Damage To Museum Specimens, Christopher Sheil, Luke J. Welton

2020 Faculty Bibliography

No abstract provided.

A New Genus Of Baetidae (Insecta, Ephemeroptera) From Southeast Asia, Thomas Kaltenbach, Jhoana M. Garces, Jean-Luc Gattolliat

Biology Faculty Publications

A new genus of Baetidae is described from Southeast Asia, Procerobaetis gen. nov. It has a wide distribution reaching from Indonesia (Sumatra) to the Philippines. Two new species are described from Indonesia, P. leptobranchius gen. et sp. nov. and P. petersorum gen. et sp. nov., and one new species from the Philippines, P. freitagi gen. et sp. nov. Procerobaetis gen. nov. is characterized by having seven pairs of elongate, apically pointed gills. At least gills I and II are very slender with strongly extended points, which is unique in Baetidae. Similar gills were described from Leptophlebiidae. Procerobaetis gen. nov. is …

Form And Function Of The California Sea Lion (Zalophus Californianus) Hindflippers: Control Surfaces For Subaqueous Maneuvers, Ariel Leahy

West Chester University Master’s Theses

The hindflippers of California sea lions (Zalophus californianus) have previously been overlooked as aquatic control surfaces. Although passively trailed in rectilinear swimming, the hindflippers are abducted into a delta-wing shape during aquatic maneuvers. As the anatomy of sea lion hindflippers had not previously been described, anatomical/morphological examinations were completed via scaled measurements and dissections. It was found that the tendons of Flexor Hallucis Longus and Flexor Digitorum Longus insert into the collagen matrix of the crenellations instead of onto bone and the tendons of Flexor Digitorum Brevis contain foramen through which the tendons of Flexor Digitorum Longus pass. …

An Ecomorphological Analysis Of Locomotion In Larvae And Neotenes Of Two Salamander Species: Dicamptodon Tenebrosus (Stream-Type) And Ambystoma Gracile (Pond-Type), Ethan Hardister Snee

Cal Poly Humboldt theses and projects

Morphology is the physical expression of a species’ evolutionary history and adaptation to its environment and as such is tied to ecology. Salamander larvae have historically been separated into "pond-type" and "stream-type" groups based on their morphology, however no studies have been performed quantifying the relationship between morphology and ecology. In this study I utilized in-situ behavioral observations, morphological measurements, and in-lab performance tests of Dicamptodon tenebrosus (stream-type) and Ambystoma gracile (pond-type) to examine the relationship between salamander larval morphology and ecology. In the field, behavior was video recorded during nighttime surveys; afterwards animals were captured and limb measurements were …

Assessing Morphology Of Iprgcs After Traumatic Brain Injury, Brian Foresi, Matt Smith

Williams Honors College, Honors Research Projects

ipRGCs are retinal ganglion cells that project to visual processing centers of the brain for nonimage forming visual functions. The relation of ipRGCs to tramatic brain injury (TBI) is emerging as data has been published describing ipRGC functional changes in TBI affected military veterans. Major symptomologies of concussions, a mild form of TBI, also overlap with the function governed by sites in the brain with major ipRGC projection percentages. Assesing if a morphological change is occuring in the ipRGCs after a TBI could support the idea of a pathological mechanism of the injury. This study could also indicate further relevance …

Trade-Offs Between Morphology And Thermal Niches Mediate Adaptation In Response To Competing Selective Pressures, Stella F. Uiterwaal, Ian T. Lagerstrom, Thomas M. Luhring, Miranda E. Salsbery, John P. Delong

School of Biological Sciences: Faculty Publications

Abstract

The effects of climate change—such as increased temperature variability and novel predators—rarely happen in isolation, but it is unclear how organisms cope with multiple stressors simultaneously. To explore this, we grew replicate Paramecium caudatum populations in either constant or variable temperatures and exposed half to predation. We then fit thermal performance curves (TPCs) of intrinsic growth rate (r_max) for each replicate population (N = 12) across seven temperatures (10°C–38°C). TPCs of P. caudatum exposed to both temperature variability and predation responded only to one or the other (but not both), resulting in unpredictable outcomes. These changes in …

Trade-Offs Between Morphology And Thermal Niches Mediate Adaptation In Response To Competing Selective Pressures, Stella F. Uiterwaal, Ian T. Lagerstrom, Thomas M. Luhring, Miranda E. Salsbery, John P. Delong

School of Biological Sciences: Faculty Publications

The effects of climate change—such as increased temperature variability and novel predators—rarely happen in isolation, but it is unclear how organisms cope with mul- tiple stressors simultaneously. To explore this, we grew replicate Paramecium caudatum populations in either constant or variable temperatures and exposed half to predation. We then fit thermal performance curves (TPCs) of intrinsic growth rate (r_max) for each replicate population (N = 12) across seven temperatures (10°C–38°C). TPCs of P. caudatum exposed to both temperature variability and predation re- sponded only to one or the other (but not both), resulting in unpredictable outcomes. …

Amphibian Vocalization: Implications Of A Novel Laryngeal Muscle In The Calling Mechanisms Of The TúNgara Frog Engystomops Pustulosus, Amy D. Lagorio

University of the Pacific Theses and Dissertations

The current functional model of the anuran larynx includes four pairs of laryngeal muscles. Their contractions do not account, however, for the behavioral control of call complexity observed in male túngara frogs (Engystomops pustulosus), which optionally add a secondary note with distinct harmonic structure to their advertisement call. Examination of the túngara frog's laryngeal morphology through dissection, microtomography, and resin histology has revealed that the m. dilatator laryngis is divided into two separate bundles (superficial and deep). The superficial bundle closely matches the typical description of the m. dilatator laryngis and is well positioned to open the glottis. …

Genetics And Morphology Of Invasive Tubastraea Species Within The Gulf Of Mexico: A Case Study Of Species Misidentification And Distribution, Amelia E. Mcclure

Theses and Dissertations

The invasive corals, Tubastraea coccinea and Tubastraea micrathus, are known to thrive in reefs within the Gulf of Mexico (GOM). Many studies have indicated that species within this genus are spreading throughout the western Atlantic due to their successful invasion on degraded and artificial reef systems. In the Northern GOM, artificial reefs have been created from decommissioned oil rigs and sunken vessels to provide a hard substrate for coral growth. Although, this method is demonstrating success, it is also facilitating, the dispersal of undesired species. The species, T. coccinea and T. micranthus, were thought to be the only …

The Functional, Ecological, And Evolutionary Morphology Of Sea Lampreys (Petromyzon Marinus), Bradley Morgan Wood

LSU Doctoral Dissertations

Lampreys (Petromyzontiformes) are jawless vertebrates with an evolutionary history lasting at least 360 million years and are often used in comparisons with jawed vertebrates because some of their morphological aspects, such as the segmented trunk musculature with curved myosepta and a non-mineralized skeleton fibrous skeleton, are thought to resemble the condition of early vertebrates before the evolution of jaws. Although earlier authors studied the morphology of the skeleto-muscular system of the trunk of lampreys, their studies are not detailed and complete enough to allow a functional and biomechanical analysis that is needed as a basis for modeling the mechanics of …