Biology Commons^™

Zinc Sunscreens Affect Development Of Strongylocentrotus Purpuratus Embryos, Brittany E. Cunningham, Nikki L. Adams

Master's Theses

The growing popularity of physical sunscreens will also lead to an increased release of the ingredients from zinc oxide (ZnO) sunscreens into marine environments. Though zinc (Zn) is a necessary micronutrient in the ocean, greater than natural Zn concentrations are being released into marine environments by use of sunscreens. The extent of the consequences of the addition of Zn to the ocean are not fully understood. We investigated effects of materials released by zinc oxide (ZnO) sunscreens on the development of California purple sea urchin, Strongylocentrotus purpuratus. Embryos developed in various concentrations of Zn, the sources of which included …

Association Of P53 Polymorphisms, Pah-Like Fluorescence, And Developmental Trends In Caught Gulf Menhaden To Crude Oil Exposure Post-Deepwater Horizon Oil Spill: A Holistic Approach, Kevin Luiz Frisina

Capstone Projects/Undergraduate Honors Theses

Environmental pollution is of great concern in the United States. Of special concern is the chronic effects from the exposure to potentially carcinogenic compounds released from episodic environmental disasters (e.g. 911 twin-towers, oil spills). Disasters like the British Petroleum (BP) Deepwater Horizon oil spill in the Gulf of Mexico (GOM), affected many marine organisms, exposing them to crude oil polycyclic aromatic hydrocarbons (PAHs), some of which are known carcinogenic. Despite many marine-based consumer products (e.g. fish oil, animal feed, fertilizer) were known affected by the BP oil spill, bioaccumulation and chronic toxicity of the crude oil PAHs into marine organisms …

Innate Lymphoid Cells: Transcriptional Profiles And Cytokine Developmental Requirements, Michelle Lauren Robinette

Arts & Sciences Graduate Student Theses and Dissertations

Innate lymphoid cells (ILCs) are a recently discovered lineage of professional cytokine-producing cells that strikingly mirror T cells in transcriptional circuitry and effector functions, but derive from distinct progenitors and do not express recombined antigen-specific receptors. These cells include natural killer (NK) cells, which parallel cytotoxic CD8+ T cells, and three additional classes of ILCs enriched at mucosal surfaces that generate signature cytokines reminiscent of polarized CD4+ helper T cells subsets, called ILC1, ILC2, and ILC3. As ILCs have been implicated in the pathogenesis of colitis, cancer, allergy, and autoimmunity in both human and mouse, understanding the functional capacity of …

Detecting Bias In Large-Scale Comparative Analyses: Methods For Expanding The Scope Of Hypothesis-Testing With Hormonebase, Michele A. Johnson, C. D. Francis, E. T. Miller, C. J. Downs, Maren N. Vitousek

Biology Faculty Research

To address large-scale questions in evolutionary biology, the compilation of data from a variety of sources is often required. This is a major challenge in the development of databases in organismal biology. Here, we describe the procedure we used to reconstruct the phylogeny of the 474 species represented in HormoneBase, including fish, amphibians, mammals, birds, and reptiles. We also provide the methodology used to compile vertebrate environmental, life history, and metabolic rate data for use in conjunction with the HormoneBase database to test hypotheses of the evolution of steroid hormone traits. We then report a series of analyses using these …

Hplc Method Development And Instrument Qc For Aldehyde And Ketone Compounds, Trevor O'Neil, Seth Lyman

Biology Posters

The Uintah Basin periodically experiences high ozone levels during the winter season (Lyman et al). Carbonyl compounds are produced from various emission sources and are precursors to ground level ozone production. Of these compounds, several aldehydes and ketones are volatile and listed as hazardous under the Clean Air Act (1990). We regularly measure carbonyl concentrations in air via high-performance liquid chromatography (HPLC) as part of our efforts to better understand and improve air quality in the Uintah Basin. For this project, we investigated possible improvements to our HPLC system to increase resolution, identification, and quantification of carbonyls in collected air …

Development Of Murine Model For Enterovirus D68 In Ag-129 Mice, John Mcclatchy, Joseph Evans, Brett Hurst, Bart Tarbet

Biology Posters

Enterovirus D68 (EV-D68) is an emerging picornavirus virus which typically causes respiratory disease. In 2014, a nationwide outbreak of EV-D68 occurred, with a portion of these cases associated with neurological disease. At the time of this outbreak, no animal models existed for Enterovirus D68, making it difficult to characterize pathology and test potential therapeutics. To address this, we developed a mouse model of EVd68 infection in AG-129 mice (immuno-compromised mice).

Novel Species-Specific Glycoprotein On The Surface Of Mytilus Edulis And M. Trossulus Eggs, Fiona M. Harper, Kasandra J. Riley, R. D. Rawson

Faculty Publications

Protein–protein interactions play a central role in the gamete attraction, binding, and fusion stages of gamete interactions and fertilization for broadcast spawning species, such as marine mussels in the Mytilus edulis species complex. Although assortative gamete interaction has been implicated in the level of reproductive isolation among the three species in this complex, the molecular basis of these interactions has not been elucidated. Using mass spectrometry peptide sequencing, cDNA sequencing, and bioinformatics approaches, we have investigated species-level variation in the proteins expressed on the surface of mussel eggs. We herein describe an extracellular protein, MESP-1, from the surface of the …

Simplifying Methods For In Vitro Metamorphosis Of Glochidia, Morgan A. Kern

Graduate Theses/Dissertations

Captive culture of Unionoid mussels is complicated by the parasitic larval stage, which normally requires a host fish for metamorphosis. Alternatively, some mussel species can metamorphose in vitro, i.e. in an artificial medium in Petri dishes. Most workers have used 5% CO₂ atmosphere and bicarbonate to stabilize pH, requiring a specialized incubator. In the present study, in vitro metamorphosis success of Anodonta oregonensis and other species were higher or similar in air than in 1%, or 5% CO₂. The nutritional role of the medium was tested by substituting physiological saline without nutrients at varying intervals before …

Characterizing The Impacts Of Contaminants On Fish Embryogenesis And Revealing An Alternate Molecular Mechanism Of Ahr Mediated Cardiac Defects, Corinna Singleman

Dissertations, Theses, and Capstone Projects

There is a long history of damage to natural ecosystems from environmental pollution. Many environmental contaminants are man-made and have been released with abandon over the last 100 years including dioxins, 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), and polychlorinated biphenyls (PCBs). These chemicals act on similar cellular processes and cause skin lesions, cancer, learning disabilities and reproductive problems in many vertebrates. There are many studies exploring various aspects of TCDD and PCB exposure on model and wild organisms. Few studies however, have compared effects of PCB mixtures on ecosystems to effects of individual PCBs in the lab. The first aim of this thesis is …

Modeling Complex Patterns Of Differential Dna Methylation That Associate With Expression Change, Christopher E. Schlosberg

Arts & Sciences Graduate Student Theses and Dissertations

Gene expression is driven by specific combinations of transcription factors binding to regulatory sequences to define cell type expression profiles. Changes in DNA sequence alter transcription factor binding affinities and gene expression, and DNA methylation is an additional source of variation that is maintained throughout cellular division. Numerous genomic studies are underway to determine which genes are abnormally regulated by DNA methylation in disease. However, we have a poor understanding of how disease-specific methylation variation affects expression. Global DNA demethylation agents have been clinically approved for use in cancer, which has spurred interest in identifying genes which would be most …

A Comparison Of Electronic And Traditional Cigarette Butt Leachate On The Development Of Xenopus Laevis Embryos, Tatiana Tatum Parker, James Rayburn

Research, Publications & Creative Work

Potential developmental toxicities of three different cigarette butt leachates were evaluated using the frog embryo teratogenesis assay–Xenopus (FETAX). Xenopus laevis embryos were exposed to regular cigarette butt (RCB), menthol (MCB) and electronic (ECB) in concentrations ranging from 0 to 4 butts/l for RCB and MCB and 0–10 butts/l for ECB. The embryos were from stage 8 to 11 and were exposed for a 96-h period in static renewal test conditions. Median lethal concentration (LC50), malformation (EC50), non-observed adverse effect concentration (NOAEC), and lowest observed adverse effect concentration (LOAEC) were calculated. Results from these studies suggest that each tested leachate is …

The Sca1+ Mesenchymal Stromal Subpopulation Promotesdendritic Cell Commitment In The Niche, Na Li, Dandan Yin, Huijie Zhang, Jinmei Xu, Fan Wen, Zheng Liu, Yaozhen Chen, Ning An, Jiajia Xin, Yazhou Wang, Wen Yin, Xingbin Hu

Turkish Journal of Biology

The hematopoietic microenvironment regulates self-renewal and differentiation of hematopoietic stem cells. Mesenchymal stromal cells (MSCs) contribute to the niche and participate in supporting dendritic cell (DC) commitment in vitro and in vivo. However, due to MSCs being heterogenic, it is necessary to understand the function of the MSC subpopulation in modulating the DC commitment. The current study showed that one of the bone-related Sca1+ MSCs enhanced bone marrow cell differentiation into DCs by direct cell-to-cell contact. Furthermore, the expression of STAT3 and STAT5 genes decreased in supernatant cells after Sca1+ MSCs were cocultured with bone marrow cells. In contrast, the …

Differences In Preservice Teachers’ Readiness To Use Ict In Education And Development Of Tpack, Erkko Sointu, Teemu Valtonen, Christine E. Cutucache, Jari Kukkonen, Matthew C. Lambert, Kati Mäkitalo‐Siegl

Biology Faculty Proceedings & Presentations

Education for the 21st century society requires the use of Information and Communication Technology (ICT) in education. This presents challenges for preservice teacher education. Thus, more cognate understanding about preservice teachers’ readiness to use ICT in education, coupled with knowledge related to ICT in education, is needed. Furthermore, it is important to understand that preservice teachers have various levels of readiness to use ICT in education, thereby creating a demand to investigate sub-groups within preservice teachers. This study focuses on differences of readiness and development of knowledge between preservice teachers’ based on two theoretical constructs: Theory of Planned Behavior and …

Characterizing The Developmental And Reproductive Toxicities Of Cannabidiol And Δ9-Tetrahydrocannabinol, Dennis Ray Carty

Electronic Theses and Dissertations

Medical marijuana is legal in twenty-nine of the United States and an additional nineteen states have passed legislation for cannabidiol (CBD) treatment of drug-resistant epilepsy, such as Dravet Syndrome (DS) which is diagnosed in children as young as two months. While CBD has shown anecdotal and recently clinical trial efficacy in reducing seizure frequency in DS patients, little is known about the potential adverse side-effects on child physiology, brain development, adult disease, or subsequent generations. Moreover, CBD is rarely administered without including low concentrations of Δ9-tetrahydrocannabinol (THC). The goal of this project is to characterize the relative morphological, behavioral, reproductive, …

Zebrafish (Danio Rerio) As A Model For Orofacial Research, Kevin A. Ghaffari

Theses and Dissertations

Across species, the face and more specifically the mouth, serves as an essential facet of everyday life. Amongst humans the mouth serves as a tool for the ingestion of food, a marker for facial recognition and a medium for communication. In order for the mouth to properly form, a series of precise growth and fusion events are needed. In order to insure that these events are orchestrated properly is a wide array of signals, transcription factors and epigenetic regulators. Due to the needed precision of these events, congenital birth defects of the face such as cleft lip and cleft palate …

Studies On Development In Euphilomedes Ostracods: Embryology, Nervous System Development, And The Genetics Of Sexually Dimorphic Eye Development, Kristina Koyama

University of the Pacific Theses and Dissertations

Model organism studies have been fundamental in understanding evolutionary and developmental biology. However, non-model organisms present opportunities to study unique characteristics and as comparisons to model organisms, leading us toward broader and more relevant perspectives on diversity. The Euphilomedes genus of ostracods is an example of a non-model group with potential for evolutionary and developmental studies.

Ostracoda is an ancient, basally branching lineage of Crustaceans with a complete and prodigious fossil record. Despite the group’s promise for evolutionary studies, much remains unknown about the basic biology of this clade. There are a limited number of embryogenesis studies in Ostracoda; here, …

The Role Of Hif1alpha And Hif2alpha In Muscle Development And Satellite Cell Function, Shiqi Yang

Open Access Theses

Hypoxia inducible factors (HIFs) are central mediators of cellular responses to fluctuations of oxygen, an environmental regulator of stem cell activity. Muscle satellite cells are myogenic stem cells whose quiescence, activation, self-renewal and differentiation are influenced by microenvironment oxygen levels. However, the in vivo roles of HIFs in quiescent satellite cells and activated satellite cells (myoblasts) are poorly understood. Expression analyses indicate that HIF1α and HIF2α are preferentially expressed in pre- and post-differentiation myoblasts, respectively. Interestingly, double knockout of HIF1α and HIF2α (HIF1α/2α dKO) in embryonic myoblasts results in apparently normal muscle development and growth. However, HIF1α/2α dKO in postnatal …

Statistical Learning In Songbirds: From Self-Tutoring To Song Culture, Olga Fehér, Iva Ljubičić, Kenta Suzuki, Kazuo Okanoya, Ofer Tchernichovski

Publications and Research

At the onset of vocal development, both songbirds and humans produce variable vocal babbling with broadly distributed acoustic features. Over development, these vocalizations differentiate into the well-defined, categorical signals that characterize adult vocal behaviour. A broadly distributed signal is ideal for vocal exploration, that is, for matching vocal production to the statistics of the sensory input. The developmental transition to categorical signals is a gradual process during which the vocal output becomes differentiated and stable. But does it require categorical input?We trained juvenile zebra finches with playbacks of their own developing song, produced just a few moments earlier, updated continuously …

Host-Parasite Relationships Between The Copepod Naobranchia Lizae And Its Host (Striped Mullet, Mugil Cephalus): A Description Of Morphological Development, Sara R. Teemer

DePaul Discoveries

The parasitic copepod, Naobranchia lizae, is often found within the gill arches of the striped mullet, Mugil cephalus, in the Charleston Harbor Estuarine System of South Carolina. The parasite is relatively common, but little is known about its early stages of development. In order to describe the developmental stages and pattern of morphological development, 221 female N. lizae that were collected between February 2002 and May 2003 were used. Using variation in morphological characters (maxilla, trunk), these parasites were assigned to developmental stages (juvenile, subadult, adult). A small number of the males (three ‘dwarf’ males) were also found …

The Effects Of Amphetamine Exposure On Neurodevelopment And Behavior In Early Life Stages Of Danio Rerio, Jennifer D. Bullard

Master of Science in Integrative Biology Theses

Amphetamines are frequently prescribed to young children for attention deficit hyperactivity disorder (ADHD). Due to the recent rise in ADHD diagnoses and the resulting increase in amphetamine intake in children, we investigated how amphetamine exposure impacts the development of stereotyped behaviors and the neural circuit that governs these behaviors. The zebrafish (Danio rerio) was used as our model organism because of the extensively studied developmental milestones these fish provide. Using escape responses as a behavior model, we exposed embryos to three doses of amphetamine (10 μg/ml, 20 μg/ml, and 30 μg/ml) environmentally during the first 48 hours of …

The Role Of Daf-19 In Non-Ciliated Neurons: How Is Neural Development Regulated By Different Daf-19 Isoforms?, Zabdiel Ek Vazquez

Lawrence University Honors Projects

A degenerative disease-like phenotype, specifically reduction in synaptic protein levels in adult worms, is correlated with loss-of-function of the only RFX transcription factor gene, daf-19, in C. elegans. This gene encodes four known transcription factor isoforms, two of which are correlated with particular functions. The DAF-19C isoform activates genes responsible for cilia development, while DAF-19M is needed for cilia specification in males. A comparison of the transcriptome of daf-19 null and isogenic wild type adult worms suggests both positive and negative regulation of gene expression is correlated with the presence of DAF-19 proteins. We have assessed DAF-19 regulation …

Further Support For Thermal Ecosystem Engineering By Wandering Albatross On Marion Island, Steven L Chown, Justine D. Shaw, Tanya M Haupt, Brent J Sinclair

Biology Publications

On sub-Antarctic Marion Island, wandering albatross (Diomedea exulans) nests support high abundances of tineid moth, Pringleophaga marioni, caterpillars. Previous work proposed that the birds serve as thermal ecosystem engineers by elevating nest temperatures relative to ambient, thereby promoting growth and survival of the caterpillars. However, only 17 days of temperature data were presented previously, despite year-long nest occupation by birds. Previous sampling was also restricted to old and recently failed nests, though nests from which chicks have recently fledged are key to understanding how the engineering effect is realized. Here we build on previous work by providing nest temperature data …

Seasonal Dimorphism In Gastropod Hatchling Size: What Can We Learn From Egg Mass Morphology And Deposition Site Conditions?, Lily A. Harrison

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Egg size is one of the most important features of marine invertebrate reproduction because it provides insight into developmental patterns, offspring size, and adult investment per offspring. Intraspecific variation in egg size and the resulting hatchling size may depend on many factors including environmental and maternal conditions and geographic location. Therefore, both the season in which eggs are laid and the spatial heterogeneity of deposition sites may influence egg size and hatchling size. Natica chemnitzii deposits egg masses on sandy beaches along the coast of the Bay of Panama. During the wet (non-upwelling) season hatchling size is unimodal. However, monthly …

Characterization Of Somatically-Eliminated Genes During Development Of The Sea Lamprey (Petromyzon Marinus), Stephanie A. Bryant

Theses and Dissertations--Biology

The sea lamprey (Petromyzon marinus) undergoes programmed genome rearrangements (PGRs) during early development that facilitate the elimination of ~20% of the genome from the somatic cell lineage, resulting in distinct somatic and germline genomes. To improve our understanding of the evolutionary/developmental logic of PGR, we generated computational predictions to identify candidate germline-specific genes within a transcriptomic dataset derived from adult germline and the embryonic stages encompassing PGR. Validation studies identified 44 germline-specific genes and characterized patterns of transcription and DNA loss during early embryogenesis. Expression analyses reveal that several of these genes are differentially expressed during early embryogenesis …

Weighing The Relative Potential Impacts Of Climate Change And Land-Use Change On An Endangered Bird, Betsy A. Bancroft, Joshua J. Lawler, Nathan H. Schumaker

Biology Faculty Scholarship

Climate change and land-use change are projected to be the two greatest drivers of biodiversity loss over the coming century. Land-use change has resulted in extensive habitat loss for many species. Likewise, climate change has affected many species resulting in range shifts, changes in phenology, and altered interactions. We used a spatially explicit, individual-based model to explore the effects of land-use change and climate change on a population of the endangered Red-cockaded Woodpecker (RCW; Picoides borealis). We modeled the effects of land-use change using multiple scenarios representing different spatial arrangements of new training areas for troops across Fort Benning. …

Flight Muscle Progenitor Populations In Drosophila Melanogaster, Elizabeth Carvosso Clarke

Biology ETDs

We use the Drosophila system to define how genes control muscle development and function. Many of the genes in the fruit fly, Drosophila melanogaster, are conserved with higher animals, and so our results can be important in understanding mechanisms of vertebrate muscle development and disease. Study of the flight muscle progenitor populations in Drosophila gives clearer understanding of the genetic regulatory networks that lead to the development of flight muscle. The direct flight muscles (DFMs) and indirect flight muscles (IFMs) arise from the myoblast population of the notal region of the Drosophila wing imaginal disc. Within the myoblast population, there …

Effects Of Prenatal Environment Are Revealed By Post-Natal Challenges: Embryonic Hormone Exposure, Adrenocortical Function And Food In Seabird Chicks, Z. Morgan Benowitz-Fredericks, Jannik Schultner, Alexander S. Kitaysky

Faculty Journal Articles

The interaction between prenatal environments and postnatal environments is an important source of phenotypic variability. We examined the ability of prenatal steroid exposure and postnatal energy restriction to explain adrenocortical function and fledging age in captive seabird chicks. We proposed and tested two hypotheses: (1) the strength of prenatal effects is attenuated by challenging postnatal environments (postnatal override) and (2) the strength of prenatal effects increases with the severity of postnatal challenges (postnatal reveal). We reared common murre (Uria aalge) chicks and measured prenatal exposure to corticosterone (CORT) and testosterone (T) from allantoic waste. Adrenocortical function was assessed after 10 …

Evolutionary Developmental Leaf Morphology Of The Plant Family Araceae, Claudia Liliana Henriquez

Arts & Sciences Graduate Student Theses and Dissertations

Studying the evolutionary developmental morphology of leaves using next-generation phylogenetics, a candidate gene approach and comparative developmental studies in the plant family Araceae is the overarching theme of the dissertation.The plant family Araceae is an ancient lineage from the Early Cretaceous and belongs to the monocotyledons. Members of Araceae display striking variation in leaf development; such variation contradicts traditional models of monocot leaf development. Additionally, dissected leaves, which are rare in monocots, seem to have evolved independently multiple times in Araceae by various developmental mechanisms.Despite extensive efforts to elucidate the evolutionary history of Araceae, phylogenetic ambiguity in the backbone of …

How Gains And Losses Influence The Brain And Behavior: Relations To Age, Risk For Depression, And Individual Differences, Katherine R. Luking

Arts & Sciences Graduate Student Theses and Dissertations

Behavioral and neural response to rewards and punishments has been the subject of a growing literature with particular interest within developmental, psychopathology, and individual difference domains. There is now mounting evidence suggesting that adolescents show heightened response to reward relative to adults, and that adolescents with Major Depressive Disorder (MDD), elevated depressive symptoms, or at high-risk for depression show reduced response to reward. However, it is unclear whether similar relations between response to incentives and development/psychopathology are observed during childhood. Here we examine behavioral, neural (functional magnetic resonance imaging - fMRI), and self-reported responsiveness to gain and loss of rewards …

Effects Of Benzo[A]Pyrene And Cyp19a1b Knockdown On Zebrafish Development, Khalid M. Alharthy

Electronic Theses and Dissertations

Benzo[a]pyrene (BaP) is a ubiquitous environmental contaminant that is both an endocrine disruptor and a carcinogen. Aromatase (CYP19) is a key enzyme in steroidogenesis playing a key role in the hypothalamus-pituitary-gonad feedback loop. We hypothesized that BaP would negatively impact cyp19a1b expression in zebrafish, in turn, adversely affecting development and physiology. Here, we consider whether the toxicities observed following BaP exposure are comparable to those following a transient morpholino (MO)-mediated CYP19a1b knockdown or exposure to an aromatase inhibitor (fadrozole) during early development. One-cell zebrafish embryos were injected with a CYP19a1b-MO or control-MO. Other non-injected embryos were exposed to nominal waterborne …