Biology Commons^™

Time Course Investigation Of The Dermal Leukocyte Response To Lipoteichoic Acid In Chickens, Ian M. Gilbert, Jossie M. Santamaria, Gisela F. Erf

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Lipoteichoic acid (LTA) is a cell-wall polymer in Gram-positive bacteria that stimulates inflammation. Few studies have investigated in vivo immune response to LTA, and none of the in vivo studies have been performed in birds. For this project, the pulp (a skin derivative) of growing feathers (GF) of chickens was used to investigate the in vivo effects of intradermally injected LTA. In Study 1, GF of chickens were injected with 10 μL of differing concentrations of LTA (0.1, 1.0, 10, 100 or 250 μg LTA/mL; 3 chickens/dose). Growing feathers were plucked before injection (0 h) and at 6, 24, 48, …

College Of Natural Sciences Newsletter, January 2022, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 3, Issue 1

Page 1 Dean's Message
Page 2 Awards & Recognition
Page 3 Outreach in Harrisburg, SD
Page 4 Geography Alumni Named Among 'Highly Cited Researchers', 53rd Annual Geography Convention
Page 5 Geography Convention Speakers, Brookings/SDSU Day
Page 6 Media Coverage of Natural Sciences
Page 7 Open PRAIRIE Data
Page 8 Fall 2021 Dean's List
Page 9 Fall 2021 Dean's List, cont.

A Review Of Virus-Vectored Vaccines: Current Production Methods, Uses, Issues, And Future Perspectives, Jaden Marks

Biology and Microbiology Graduate Students Plan B Research Projects

Viral vector vaccines have recently risen to the forefront of vaccinology, but there are multiple factors that must be addressed before they achieve widespread approval and use. The concept of using viruses as vectors is not new, and numerous attempts to create vaccines that utilize virus vectors have been made in the past 25 years. Despite this, only one viral vector vaccine has gained full approval by the FDA. The goal of this review is to provide a comprehensive overview of the types of viral vector vaccines, production and purification methods, current and future viral vector vaccines, the issues and …

Review Of A Chimeric Hemagglutinin-Based Influenza Vaccine Approach, Whitney Muck

Biology and Microbiology Graduate Students Plan B Research Projects

Influenza virus has affected human populations for centuries, causing an acute respiratory effect on the body. Even with scientific advancements in vaccine research, there are still serious limitations to the influenza vaccine. Varying strains and the constant recombination of the influenza virus has caused annual influenza circulation to be difficult to predict. The ongoing 40 race to develop a more efficient vaccine to broadly protect against the variety of influenza strains remains a public health priority. Many strategies have been studied to improve the current vaccine. The use of a chimeric hemagglutinin-based vaccine is in the first stages of human …

Chimeric Antigen Receptor T-Cell Therapy In Cancer, Brian Stahl

Biology and Microbiology Graduate Students Plan B Research Projects

The development of immune-checkpoint-inhibitors (ICIs) has led to promising advancements in the treatment of patients with cancers, leading with the use of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) as a negative regulator of T cell activation in the mid-1990s. With the discovery of two ligands for program cell death protein-1 (PD-1) and promising checkpoint blockades in 2010, this sparked a cascade of hallmark immunotherapy drug patents, focusing on the mechanism of anti PD-1 and anti PD-L1 antibody inhibitors. Since then, chimeric antigen receptor (CAR)-engineered T (CAR-T) cells have emerged into the immuno-oncologic scene for treatment of hematological malignancies. These genetically …

A Review Of T1d: Prevalence, Current Therapies, And Cellular Therapies For The Future, Fahd Nazir

Biology and Microbiology Graduate Students Plan B Research Projects

Type 1 diabetes (T1D) is a chronic autoimmune disease that is characterized by the destruction of pancreatic β-cells and therefore, creating an insulin deficiency within the body. A deficiency of insulin within the body disrupts homeostatic glucose control leading to hyperglycemia and therefore, the need for exogenous insulin. Global incidence of T1D has been increasing for several decades and if current trajectory trends continue, incidence could double in the next year. In addition, diabetes is the seventh leading cause of death in the United States. Current therapies for the treatment of T1D include insulin injections, insulin-pump therapy, pancreatic transplant, and …

Alzheimer’S Disease: An Overview And Current Phase 3 Disease-Modifying Biologic Treatments, Haley Jahnke

Biology and Microbiology Graduate Students Plan B Research Projects

Alzheimer’s Disease (AD) is a degenerative brain disease caused by cell damage leading to brain changes such as amyloid plaques and neurofibrillary tangles. Alois Alzheimer was a clinical psychiatrist and neuroanatomist in Germany who first discovered Alzheimer’s Disease through microscopic viewing of Auguste D’s brain. Through more research following Dr. Alzheimer’s death, they began to stage AD. The six stages are: pre-clinical, mild, moderate, moderately severe, severe, and very severe. The current treatments approved by the FDA work to slow the progression of AD, rather than modify the disease. There are currently three Disease-Modifying Biologic clinical-trial drugs on the market …

Oral Microbiome And Its Effect On Respiratory Disease, Cole Pudwill

Biology and Microbiology Graduate Students Plan B Research Projects

The oral microbiome is composed of several different types of bacteria that can affect how our body operates. There are over 700 different bacteria living in our mouths. These bacteria can be helpful and harmful to our bodies, but they are synergistic in a way. There are several factors such as age, diet, smoking, and oral care that affect bacterial makeup. When there 10 is a significant difference, our immune system becomes weakened and respiratory disease set in. The immune system then works to return the microbiome back to homeostasis. When this fails, the diseases become chronic. Thus, the oral …

Myrmecochorous Plants And Their Ant Seed Dispersers Through Successional Stages In Temperate Cove Forests, Robert Warren, Mary Schultz, James Costa, Beverly Collins, Mark Bradford

Biology Faculty Datasets

Anthropogenic disturbance can decrease woodland diversity in the species-rich herbaceous layer of eastern deciduous forests, and ant-dispersed (myrmecochorous) plants may be particularly affected due to their limited ability to re-colonize secondary forests. Consequently, we predicted that myrmecochorous plants and their keystone seed-dispersing ants would increase with time since last disturbance, as reflected by young, middle or mature forest successional stage. Specifically, we hypothesized that myrmecochore abundance and richness would be relatively lowest in the youngest forests, moderate in middle-aged forests and highest in mature forests. We also hypothesized that experimentally introducing ant bait in a regular pattern, as might be …

Laurentian Great Lakes Warming Threatens Northern Fruit Belt Refugia, Robert Warren

Biology Faculty Datasets

Climate refugia are anomalous ‘pockets’ of spatially or temporally disjunct environmental conditions that buffer distinct flora and fauna against prevailing climatic conditions. Physiographic landscape features, such as large water bodies, can create these micro-to-macro-scale terrestrial habitats, such as the prevailing westerly winds across the Laurentian Great Lakes that create relatively cooler leeward conditions in spring and relatively warmer leeward conditions in autumn. The leeward Great Lakes climate effects create a refugia (popularly known as a ‘fruit belt’) favorable for fruit-bearing trees and shrubs. This fruit belt refugia owes its existence to seasonal inversions whereby spring cooling prevents early flower budding …

The Relevance Of Pedigrees In The Conservation Genomics Era, Stephanie J. Galla, Julie A. Heath

Biology Faculty Publications and Presentations

Over the past 50 years conservation genetics has developed a substantive toolbox to inform species management. One of the most long-standing tools available to manage genetics—the pedigree—has been widely used to characterize diversity and maximize evolutionary potential in threatened populations. Now, with the ability to use high throughput sequencing to estimate relatedness, inbreeding, and genome-wide functional diversity, some have asked whether it is warranted for conservation biologists to continue collecting and collating pedigrees for species management. In this perspective, we argue that pedigrees remain a relevant tool, and when combined with genomic data, create an invaluable resource for conservation genomic …

Chemosensitivity Of Locus Coeruleus Neurons Decreases With Postnatal Development, Yasmeen Samar

Browse all Theses and Dissertations

The locus coeruleus (LC) is a chemosensory area partially responsible for ventilation. Control over ventilation relies on inter-network communication via chemical and electrical synapses and chemosensitivity to CO2/pH. As the LC develops, it’s neural control over ventilation changes. This study investigates the chemosensitivity of the locus coeruleus over the course of development in postnatal rats. We hypothesize that 1) the CO2 sensitivity of LC neurons is highest at birth and declines with development 2) LC neurons are intrinsically chemosensitive and this chemosensitivity does not decrease with development and 3) the presence of gap junctions is highest at the beginning of …

An Analysis On Various Treatment Options For Triple-Negative Breast Cancer, Elisheva Dusowitz

The Science Journal of the Lander College of Arts and Sciences

Triple-Negative Breast Cancer (TNBC) is a highly invasive, under-researched subtype of Breast Cancer. Patients lack receptors for the protein Human Epidermal Growth Factor, and both estrogen and progesterone. This negatively impacts treatment by making all hormone-sensitive treatments unavailable to TNBC patients. Since the effectiveness of various options has remained understudied, the prognosis remains poor. This paper attempts to analyze and compare the effectiveness of various treatment options. Because TNBC is very aggressive, the standard approach is to jump in with harsh surgical procedures, including mastectomies and lumpectomies. This analysis finds that more aggressive treatment may not be necessary to treat …

Full Issue: Volume 15, Number 2, Spring 2022

The Science Journal of the Lander College of Arts and Sciences

Complete .pdf file of Volume 15, Number 2 of The Science Journal of the Lander College of Arts and Sciences. Published Spring 2022.

Cardiovascular Disease - Is A Whole Food Plant-Based Diet The Answer?, Shalom Katz

The Science Journal of the Lander College of Arts and Sciences

Objective: To determine if a whole food plant-based diet can prevent and cure cardiovascular disease. Results: People on whole food plant-based diets exhibit extremely low levels of plasma LDL. Another risk factor for developing atherosclerosis, is inhibited production of nitric oxide, which is vital for healthy blood flow. One of the main inhibitors of nitric oxide production is asymmetric dimethyl-l-arginine (ADMA). An inverse relationship was found between dietary fat and ADMA levels. The diets with the best results were the diets where oil intake was reduced to a minimum. Clinically, people who went on whole food plant-based diets had their …

Osteoporosis: A Comprehensive Review, Eliyahu Greenberg

The Science Journal of the Lander College of Arts and Sciences

Osteoporosis is a disease of the skeleton that becomes more common with advanced age, especially in postmenopausal women. Osteoporosis increases the risk of fractures, thereby reducing the quality of life for those who suffer from it. Due to the aging population, direct costs resulting from osteoporosis are projected to reach upward of $25 billion per year by 2025. The main pharmaceuticals primarily target osteoclasts. Exercise may be an effective method of preventing osteoporosis, although more research needs to be done. More research should be conducted to explore potential ways to enhance osteoblastic activity as a method to treat and/or reverse …

Does Exercise Make You Smarter?, Avi Derkhidam

The Science Journal of the Lander College of Arts and Sciences

Physical exercise has been applauded for its beneficial cardiovascular and mental effects for decades. Recently, researchers have begun to study exercise from a different perspective, focusing on the positive relationship between exercise and cognition. One area of cognition highlighted in association with exercise is its positive impact on executive function. Executive function refers to the collection of neurocognitive processes involved in goal-directed problem-solving. Improved levels of cognitive function have been found to impact significant achievements throughout life. Because of this, the development, improvement, and preservation of these functions are essential. While research has proven a correlation between exercise and improved …

Effective Treatments For Ductal Carcinoma In Situ, Moshe Picciotto

The Science Journal of the Lander College of Arts and Sciences

Ductal Carcinoma In Situ (DCIS) is the most common form of breast cancer wherein its progression interrupts the hormonal receptors and genetic variation of one’s DNA. DCIS can be caused by hereditary means, or through mutations. Fortunately, due to the many different modes of contraction, there is a plethora of treatments available in the forms of mastectomy, radiation, chemotherapeutic drugs, and PARP inhibitors, each with their own mechanism of action to combat the tumor and any metastatic effects the cancer may have on the body. This paper analyzes the cancer’s mechanism of action upon the body and the positive effects …

Inferring Phylogenetic Relationships Using The Smith-Waterman Algorithm And Hierarchical Clustering, Rafael Hidalgo, Anthony Devito, Nesreen Salah, Aparna S. Varde, Robert W. Meredith

Department of Biology Faculty Scholarship and Creative Works

All biological species undergo change over time due to the evolutionary process. These changes can occur rapidly and unpredictably. Due to their high potential to spread quickly, it is critical to be able to monitor changes and detect viral variants. Phylogenetic trees serve as good methods to study evolutionary relationships. Complex big data in biomedicine is plentiful in regards to viral data. In this paper, we analyze phylogenetic trees with reference to viruses and conduct dynamic programming using the Smith-Waterman algorithm, followed by hierarchical clustering. This methodology constitutes an intelligent approach for data mining, paving the way for examining variations …

Influences Of Grazing On Habitat Characteristics, Avian Community Composition And Nesting Bird Abundance Within Cheyenne Bottoms, Ks, Kirsten Granstrom-Arndt

Master's Theses or Doctor of Nursing Practice

Cheyenne Bottoms is a 41,000-acre prairie-marsh ecosystem in central Kansas. Approximately 8,000 acres of mixed grassland are dedicated for the conservation of bird populations, but little is known about the status of bird communities within these areas. This study took place within grassland areas of Cheyenne Bottoms from May – July 2021. I investigated bird community composition, relative abundance of frequently observed bird species, vegetative characteristics, and similarity of sites across different grazing intensities (continuous, rotational, and non-grazed). The four most common bird species observed were dickcissel (Spiza americana), grasshopper sparrow (Ammodramus savannarum), meadowlark species ( …

A 16s & Its Soil Microbiome Analysis Of Native & Old-World Bluestem Invaded Soils Of Kansas Grasslands, Zachary Nelson

Master's Theses or Doctor of Nursing Practice

Invasive species are becoming an increasing problem throughout the world. Their effect on local ecosystems is detrimental and widespread, harming productive efforts such as biomass accumulation, forcing native species (plant, animals, microbes) out, and ultimately, reducing biodiversity. Investigations of how invasive plants spread are widely studied; however, there has been little to no examination of how native plants influence the microbiome in the surrounding soil. In this study, I performed a fungal and bacterial metagenomic analysis of the soil and root microbiomes of both native grasslands and grasslands invaded by Old-World Bluestem Grasses to help determine if they influence the …

Healing Sanctuary, Kammy Downs

Master's Theses or Doctor of Nursing Practice

The natural world has hidden wisdom and resources that are disregarded as we misuse our responsibility to care for them. The benefits of being in tune with nature have been traded for a culture that manipulates nature on the altar of expediency, waste, and unquenchable desire. Healing Sanctuary presents a duality. My work speaks about the relationship between the seen and unseen, represented by ten larger-than-life drawings of medicinal herbal plants that have had a profound physical healing effect on me. At the same time, plants, roots, and seeds create visceral metaphors for mental health. Our accomplishments, outlook on life, …

Efficacy Of Non-Lethal Molecular Methods In Elucidating Distribution Of Gray Treefrog Complex (Hyla Chrysoscelis/Versicolor) In Kansas, Nora K. Lazerus

Master's Theses or Doctor of Nursing Practice

Globally, amphibians are the most imperiled vertebrate taxa in part because they rely on both aquatic and terrestrial ecosystems. Specifically, their permeable skin makes them uniquely susceptible to habitat degradation and alteration. Cope’s Gray Treefrog (Hyla chrysoscelis) and the Gray Treefrog (Hyla versicolor) are a diploid-tetraploid, morphologically indistinguishable sister pair of cryptic anurans native to Kansas. Since 1987, the distribution of gray treefrogs in Kanas has extended west but the status of each species in the complex in Kansas is not known beyond its documented combined western expansion. Currently, species identification cannot be determined by nonlethal …

Effects Of Aggressive Reed (Phragmites Australis) On Aquatic Communities In A Kansas Reservoir, Allison Pardis

Master's Theses or Doctor of Nursing Practice

Phragmites australis is an Aquatic Nuisance Species (ANS) in Kansas, a non-native reed that threatens lake and river ecology, displaces desirable species, impedes movement of wildlife and humans, that can have detrimental economic effects on communities. The majority of Phragmites research is in brackish ecosystems and the effects of Phragmites in freshwater systems and especially on fishes is undocumented, even as many states and agencies invest substantial resources in management. As freshwater systems face a biodiversity crisis, prevention and control of invasive species is critical. Effective management therefore requires a thorough understanding of the effects these invaders have on ecosystems …

Community-Level Effects Of A Widescale Reduction In White-Tailed Deer (Odocoileus Virginianus) Density, Mariah Slaughter

Browse all Theses and Dissertations

The prolonged overabundance of white-tailed deer (Odocoileus virginianus) throughout the deciduous forests of eastern North America has resulted in widespread changes in the understory community. Studies have demonstrated that the exclusion of deer can allow some aspects of the understory to recover, but there are strong time-lags for deer-preferred species. Additionally, these exclosures only test the presence/absence of deer, which is not a feasible management option or desirable as deer are a part of the community. Here I evaluate how large-scale deer density manipulations within the Kinzua Quality Deer Cooperative of Pennsylvania affected understory vegetation communities. Using data from six …

Temporal And Spatial Occurrence Of Karenia Brevis Blooms In The Northcentral Gulf Of Mexico, Jonathan Jackson, Yee Lau, Paul Mickle, Just Cebrian

Gulf and Caribbean Research

No abstract provided.

Nutrient Improvements In Chesapeake Bay: Direct Effect Of Load Reductions And Implications For Coastal Management, Rebecca R. Murphy, Jennifer Keisman, Jon Harcum, Renee R. Karrh, Mike Lane, Elgin S. Perry, Qian Zhang

Biological Sciences Faculty Publications

In Chesapeake Bay in the United States, decades of management efforts have resulted in modest reductions of nutrient loads from the watershed, but the corresponding improvements in estuarine water quality have not consistently followed. Generalized additive models were used to directly link river flows and nutrient loads from the watershed to nutrient trends in the estuary on a station-by-station basis, which allowed for identification of exactly when and where responses are happening. Results show that Chesapeake Bay’s total nitrogen and total phosphorus conditions are mostly improving after accounting for variation in freshwater flow. Almost all of these improving nutrient concentrations …

Rickettsial Pathogen Perturbs Tick Circadian Gene To Infect The Vertebrate Host, Supreet Khanal, Vikas Taank, John F. Anderson, Hameeda Sultana, Girish Neelakanta

Biological Sciences Faculty Publications

Ixodes scapularis is a medically important tick that transmits several microbes to humans, including rickettsial pathogen Anaplasma phagocytophilum. In nature, these ticks encounter several abiotic factors including changes in temperature, humidity, and light. Many organisms use endogenously generated circadian pathways to encounter abiotic factors. In this study, we provide evidence for the first time to show that A. phagocytophilum modulates the arthropod circadian gene for its transmission to the vertebrate host. We noted a circadian oscillation in the expression of arthropod clock, bmal1, period and timeless genes when ticks or tick cells were exposed to alternate 12 h …

Editorial: Tick Saliva: Secret To Blood Feeding Success, Daniel E. Sonenshine, Patricia A. Nuttall, Sukanya Narasimhan

Biological Sciences Faculty Publications

No abstract provided.

Bone Morphogenetic Proteins Shape TReg Cells, Piotr Kraj

Biological Sciences Faculty Publications

The transforming growth factor-β (TGF-β) family includes cytokines controlling cell behavior, differentiation and homeostasis of various tissues including components of the immune system. Despite well recognized importance of TGF-β in controlling T cell functions, the immunomodulatory roles of many other members of the TGF-β cytokine family, especially bone morphogenetic proteins (BMPs), start to emerge. Bone Morphogenic Protein Receptor 1α (BMPR1α) is upregulated by activated effector and Foxp3+ regulatory CD4+ T cells (Treg cells) and modulates functions of both of these cell types. BMPR1α inhibits generation of proinflammatory Th17 cells and sustains peripheral Treg cells. This finding underscores the importance of …