Biology Commons^™

Mutation In Sgs1 Does Not Increase The Prevalence Of Mmbir But Causes A Reduction In The Proportion Of Gene Conversions, Joseph Oberlitner

Senior Honors Theses and Projects

Several subtypes of double-strand break repair (DSB repair) exist, with the Rad51 dependent canonical break-induced replication (BIR) pathway being extremely well documented. In contrast, little is known about the error-prone Rad51 independent DSB repair pathway called microhomology-mediated break-induced replication (mmBIR). The purpose of this study was to test the hypothesis that manipulation of the SGS1 gene in Saccharomyces cerevisiae will influence the type of DSB repair, more specifically, the amount of repair done by canonical BIR and mmBIR. A mutant, sgs1-FD, was previously documented to show no interaction with Rad51p. The interaction between Sgs1p and Rad51p is integral to …

Genetic Analysis Of Tarantulas In The Genus Brachypelma Using Inter Simple Sequence Repeats (Issr), Sarah Holtzen

Senior Honors Theses and Projects

There is a great deal of morphological and genetic species diversity on Earth that requires careful conservation. One such genetically diverse genus of tarantulas is that of Brachypelma. In this study, we employ a newer DNA fingerprinting technique known as Inter Simple Sequence Repeat (ISSR), to study the genetic variation among Brachypelma species and to determine if the invasive Brachypelma tarantula found in Florida B. vagans. Although B. vagans is a species protected under CITES Appendix II, this species has a wide distribution in Mexico and traits allowing for invasion to new habitats. It was hypothesized that the …

Developing And Testing A Cognitive Field Test For Lead-Exposed Wild Songbirds, Samantha Glowacki

Senior Honors Theses and Projects

Anthropogenic impacts drive global changes that can negatively impact wildlife. For example, using lead pipes in Flint, MI has resulted in contaminated drinking water that is likely to have moved into the environment through irrigation. Juvenile American robins (Turdus migratorius) captured in watered parks of Flint have blood-lead levels considered dangerous to brain functioning. The purpose of this study was to develop and test a feeder puzzle for assessing the cognitive effects of lead in wild urban songbirds. We predicted that songbirds could learn how to feed from a feeder puzzle, and if they visited the feeder in groups, then …

Error In Dna Mixture Analysis: Why The Application Of Forensic Dna Is Not A Perfect Science, Rachel Bisbee

Honors Program: Senior Projects (Public)

Ever since the first use of DNA evidence in 1986, it has been heavily relied on in court as a means of both convicting felons and exonerating wrongfully imprisoned people. It is a valuable tool in investigations, but like everything else, is not perfect. There have been studies on the accuracy of DNA mixture interpretation in the past with varying results. This is because mixture interpretation is a complicated process that is not always as specific as would be ideal. This study attempted to determine if two students with the exact same education in forensic science and, more specifically, DNA …

Pedigree Validation Using Genetic Markers In An Intensively-Managed Taonga Species, The Critically Endangered Kakī (Himantopus Novaezelandiae), Ashley Overbeek, Stephanie Galla, Liz Brown, Simon Cleland, Cody Thyne, Richard Maloney, Tammy Steeves

Biology Faculty Publications and Presentations

Many species recovery programmes use pedigrees to understand the genetic ancestry of individuals to inform conservation management. However, incorrect parentage assignment may limit the accuracy of these pedigrees and subsequent management decisions. This is especially relevant for pedigrees that include wild individuals, where misassignment may not only be attributed to human error, but also promiscuity (i.e. extra-pair parentage) or egg-dumping (i.e. brood parasitism). Here, we evaluate pedigree accuracy in the socially monogamous and critically endangered kakī (black stilt, Himantopus novaezelandiae) using microsatellite allele-exclusion analyses for 56 wild family groups across three breeding seasons (2014–2016, n= 340). We identified …

Direct And Indirect Effects Of Sex Steroids On Gonadotrope Cell Plasticity In The Teleost Fish Pituitary, Romain Fontaine, Muhammad Rahmad Royan, Kristine Von Krogh, Finn-Arne Weltzien, Dianne M. Baker

Biological Sciences Research

The pituitary gland controls many important physiological processes in vertebrates, including growth, homeostasis, and reproduction. As in mammals, the teleost pituitary exhibits a high degree of plasticity. This plasticity permits changes in hormone production and secretion necessary to meet the fluctuating demands over the life of an animal. Pituitary plasticity is achieved at both cellular and population levels. At the cellular level, hormone synthesis and release can be regulated via changes in cell composition to modulate both sensitivity and response to different signals. At the cell population level, the number of cells producing a given hormone can change due to …

Molecular Tools For Coral Reef Restoration: Beyond Biomarker Discovery, John Everett Parkinson, Andrew C. Baker, Iliana B. Baums, Sarah W. Davies, Andréa G. Grottoli, Sheila A. Kitchen, Mikhail V. Matz, Margaret W. Miller, Andrew A. Shantz, Carly D. Kenkel

Integrative Biology Faculty and Staff Publications

As coral reefs continue to decline due to climate change and other stressors, scientists have proposed adopting genomic tools, such as biomarkers, to aid in the conservation and restoration of these threatened ecosystems. Biomarkers are easily measured indicators of biological processes that can be used to predict or diagnose health, resilience, and other key performance metrics. The ultimate goal of developing biomarkers is to determine the conservation value and utility of a given coral colony, including the host animal, its algal symbionts, and their microbial partners. However, this goal remains distant because most efforts have not yet moved beyond the …

Diversity And Abundance Of Dragonflies And Damselflies In Tampa Bay, Florida, Meredith A. Krause, Thomas Koster, Bryan N. Macneill, Daniel J. Zydek, Nicholas T. Ogburn, Jonathan Sharpin, Robert Shell, Marc J. Lajeunesse

Integrative Biology Faculty and Staff Publications

Little is known about the community of dragonflies and damselflies in Tampa Bay, Florida, USA. To address this gap, we conducted 2 longitudinal surveys of adult odonates in a natural floodplain of the Hillsborough River in 2013 and 2017. Along with abundance and species diversity, we also measured intraspecific variation in body size, sexual dimorphism, wing-cell asymmetry, and water mite ectoparasitism. Our first weekly survey from Oct 2013 to Oct 2014 sampled 327 adults (230 female, 97 male) from 8 dragonfly species, with the eastern pondhawk (Erythemis simplicicollis Say; Odonata: Libellulidae) representing 79% of captures, followed by the second …

Transmission Of West Nile And Five Other Temperate Mosquito-Borne Viruses Peaks At Temperatures Between 23°C And 26°C, Marta S. Shocket, Anna B. Verwillow, Mailo G. Numazu, Hani Slamani, Jeremy M. Cohen, Fadoua El Moustaid, Jason Rohr, Leah R. Johnson, Erin A. Mordecai

Integrative Biology Faculty and Staff Publications

The temperature-dependence of many important mosquito-borne diseases has never been quantified. These relationships are critical for understanding current distributions and predicting future shifts from climate change. We used trait-based models to characterize temperature-dependent transmission of 10 vector–pathogen pairs of mosquitoes (Culex pipiens, Cx. quinquefascsiatus, Cx. tarsalis, and others) and viruses (West Nile, Eastern and Western Equine Encephalitis, St. Louis Encephalitis, Sindbis, and Rift Valley Fever viruses), most with substantial transmission in temperate regions. Transmission is optimized at intermediate temperatures (23–26°C) and often has wider thermal breadths (due to cooler lower thermal limits) compared to pathogens with …

Phylogeny Of Terrestrial Isopods Based On The Complete Mitochondrial Genomes, Subvert The Monophyly Of Oniscidea, Rui Zhang, Ruru Chen, Jianmei An, Carlos A. Santamaria

Integrative Biology Faculty and Staff Publications

Background: Oniscidea is the only truly terrestrial taxon within the Crustacea, and vital to soil formation. However, the monophyly of suborder Oniscidea has been in dispute since 1995, with different studies disagreeing on whether the coastal Ligiidae are included within the suborder. To clarify the phylogenetic hypothesis of suborder Oniscidea, we sequenced the complete mitochondrial genomes of Ligia exotica (Roux, 1828) and Mongoloniscus sinensis (Dollfus, 1901).

Results: Like most metazoan, the complete mitogenomes of two species with circular double strands. The structure and characters of mitogenomes of these two species are analyzed. The constructed phylogenetic analyses show that Oniscidea is …

Demonstrating Mate Choice Copying In Spiders Requires Further Research, R. Tucker Gilman, Kasey Fowler-Finn, Eileen A. Hebets

Eileen Hebets Publications

Mate choice copying—when individuals learn to prefer mates or mate types that have been chosen by others—can influence trait evo-lution and speciation (Varela et al. 2018; Dion et al. 2019). Most examples of mate choice copying are from fish, birds, and mammals including humans (Varela et al. 2018). However, 2 invertebrate examples—fruit flies and wolf spiders—have been used to argue that the phenomenon may be phylogenetically widespread, and perhaps the rule rather than the exception in nature (Varela et al. 2018). Here, we revisit the evidence for mate choice copying in wolf spiders (Fowler-Finn et al. 2015) in light of …

Immunotherapy: Therapy Vs. Enhancement, Mariah Daly

Honors Program Theses

The battle against cancer is a long-standing struggle that has resulted in new information and the development of novel medical technologies. Current research aims to figure out a way to reprogram cells and bodily mechanisms to eliminate those cells that are cancerous without destroying healthy cells in the process. Methods which use the body’s own mechanisms, such as immunotherapy, have shown and continue to show potential for specifically targeting cancer cells. Adoptive T cell therapy is one form of immunotherapy that has gained significant attention and focus in the field. Therapies improve conditions up to the normal state of being, …

Analysis Of Bacterial Dna And Water Quality: Surface Water Sampling At Gardner-Webb University, Celsea Reeder

Undergraduate Honors Theses

Part 1 of this experiment was to explore the bacterial types within the surface water on the campus of Gardner-Webb University, located in Boiling Springs, NC. Two water samples were collected from four locations on campus, including the boiling spring, Lake Hollifield, and an adjacent creek. Using the Zymo Research “Quick-DNA^™ Fungal/Bacterial Miniprep Kit,” the bacterial DNA within these samples was isolated and sent to Psomagen, Inc. for analysis. The resulting DNA sequences were analyzed through BLAST, and subsequently interpreted. For the second part of this experiment, one surface water sample was taken from the boiling spring, and another …

Fertility, Belief, And Sexuality, Madison F. Von Deylen, Kaylynne M. Glover, Vincent M. Cassone

Posters-at-the-Capitol Presentations

The human ovulatory cycle lasts an average of 28 days and is highly variable both within and among women, making ovulation and the fertile window difficult to estimate in humans. Commonly used methods for estimating fertility assume length consistency during various cycle phases, an assumption that often miscategorizes women as fertile when not and vice versa. This experiment analyzes several of the common methods used to estimate fertility, including forwards and backwards-counting methods and actuarial methods, and compares them against hormonal testing to determine the most accurate method for fertility identification. Additionally, we used hormonal ovulation tests combined with daily …

Biogeographic Variation In Resistance Of The Invasive Plant, Alliaria Petiolata, To A Powdery Mildew Fungus And Effect Of Resistance On Competitive Dynamics, Don Cipollini, Sam Davisd, Deah Lieurance, Kendra Cipollini, Volker Bahn

Biological Sciences Faculty Publications

Garlic mustard is an invasive Eurasian biennial that has spread throughout the eastern United States and southern Canada. Populations of this plant vary in their susceptibility to Erysiphe cruciferarum, a causal agent of powdery mildew disease in Brassicaceous plants. We examined whether there were biogeographic patterns in the distribution of resistance in invasive North American and native European populations of this plant. We grew plants from 78 invasive and 20 native populations and screened them for powdery mildew resistance in the greenhouse. We found that populations were mostly monomorphic for either resistance or susceptibility but that some polymorphic populations …

Larval Performance Of A Major Forest Pest On Novel Hosts And The Effect Of Stressors, Donnie Lee Peterson, Don Cipollini

Biological Sciences Faculty Publications

Novel hosts lacking a coevolutionary history with herbivores can often support improved larval performance over historic hosts; e.g., emerald ash borer [Agrilus planipennis (Fairmaire) Coleoptera: Buprestidae] on North American ash (Fraxinus spp.) trees. Whether trees are novel or ancestral, stress on plants increases emerald ash borer preference and performance. White fringetree [Chionanthus virginicus (L.) Lamiales: Oleaceae] and olive [Olea europaea (L.) Lamiales: Oleaceae] are closely related non-ash hosts that support development of emerald ash borer to adulthood, but their relative suitability as hosts and the impact of plant stress on larval success has not been well …

On The Potential For Saturated Buffers In Northwest Ohio To Remediate Nutrients From Agricultural Runoff, Stephen J. Jacquemin, Gregory J. Mcglinch, Theresa Dirksen, Angela Clayton

Biological Sciences Faculty Publications

Nutrient loading from nonpoint source runoff in the Midwest has emerged as one of the largest threats to water quality as the frequency of harmful algal blooms, hypoxic zones, and issues associated with human-resource interactions have risen abruptly over the past several decades. In this study, a saturated buffer ~500 m in length located in the western basin of the Lake Erie watershed was evaluated for its potential to reduce edge of field runoff and nutrient loading. Saturated buffers reduce runoff by routing subsurface tile drainage water into the riparian zone, providing an opportunity for drainage volume as well as …

A New Genus Of Baetidae (Insecta, Ephemeroptera) From Southeast Asia, Thomas Kaltenbach, Jhoana M. Garces, Jean-Luc Gattolliat

Biology Faculty Publications

A new genus of Baetidae is described from Southeast Asia, Procerobaetis gen. nov. It has a wide distribution reaching from Indonesia (Sumatra) to the Philippines. Two new species are described from Indonesia, P. leptobranchius gen. et sp. nov. and P. petersorum gen. et sp. nov., and one new species from the Philippines, P. freitagi gen. et sp. nov. Procerobaetis gen. nov. is characterized by having seven pairs of elongate, apically pointed gills. At least gills I and II are very slender with strongly extended points, which is unique in Baetidae. Similar gills were described from Leptophlebiidae. Procerobaetis gen. nov. is …

Sediment Microbiomes Associated With Critical Habitat Of The Juvenile American Horseshoe Crab; Limulus Polyphemus, J. Petersen, Christina P. Colon, J. L. Joyner

Publications and Research

Plumb Beach, Brooklyn, New York in USA is an important horseshoe crab breeding and nursery ground that has experienced substantial anthropogenic influence, including pollution, erosion and subsequent restoration. Since little is known about the relationship between sediment microbial communities and juvenile horseshoe crab survival, next generation sequencing was used to characterize and compare the sediment microbiome of three distinct areas of Plumb Beach:- a tidal creek with abundant juveniles, East Beach with moderate number of juveniles, and West Beach- a highly disturbed area where juvenile crabs are rarely seen. The microbiome of juvenile crab intestinal content (both dissected gut content …

Helicobacter Pylori Gene Regulation By Virulence Region Located Srnas, Veronica Janette Albrecht

EWU Masters Thesis Collection

Approximately 50% of the human population is infected with Helicobacter pylori, which can lead to gastrointestinal diseases such as ulcers and gastric adenocarcinoma. Helicobacter pylori strains are genetically variable, and some contain a DNA region called the cytotoxin associated gene pathogenicity island (cagPAI) that encodes virulence factors. Gastrointestinal disease associated with H. pylori are more likely to occur in infections with cagPAI positive strains. Helicobacter pylori has few known transcriptional regulators, but still must regulate expression to survive a constantly changing environment. A mechanism to facilitate this regulation was revealed in a transcriptome analysis conducted by Sharma et al. (2010) …

Impact Of Chytrid Fungus Pathogen On The Skin Microbiome Of Frogs In Northern Idaho And Turnbull National Wildlife Refuge, Washington, Philip M. Campos

EWU Masters Thesis Collection

Amphibians worldwide are under threat from the infectious disease chytridiomycosis, which is caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd). Bd is associated with the population declines of an estimated 501 species, 90 of which are presumed or confirmed extinct, making this the greatest documented loss of biodiversity attributed to a disease. Researching the amphibian skin microbiome may provide solutions to conservation of amphibians. Two main relationships have been observed between Bd and the microbiome: 1) bacteria producing antifungal metabolites can inhibit Bd and improve survival against the disease and 2) infection by Bd is believed to affect the composition …

Analyzing Znf16: An Understudied Gene, Chelsea L. George

Open Access Theses & Dissertations

The zinc finger protein 16 (ZNF16) has been reported to be involved in megakaryocytic and erythroid differentiation. However, ZNF16 has ubiquitous expression throughout the body thus suggesting that it might have functions outside of these blood cell lineages. Here we show that ZNF16 is expressed in different tumor and non-tumor cell lines, consistent with the hypoThesis of a more widespread role. Endogenous ZNF16 localizes to the nucleus and is enriched in the nucleolus. Interestingly, exogenous ZNF16 showed two patterns of localization depending on the tag used. EGFP-ZNF16 showed nuclear localization while 3xEGFP-ZNF16 was mainly localized to the nucleoli and other …

Molecular And Functional Characterization Of Α-Galactosyl Epitopes In Trypanosoma Cruzi, Uriel Ortega Rodriguez

Open Access Theses & Dissertations

Trypanosoma cruzi, the causative agent of Chagas disease (CD) currently affects 6-7 million people across the world. Currently, only two drugs, benznidazole and nifurtimox, are available for treatment of CD and they are highly toxic and less effective in the chronic stage of the disease. Specific biomarkers for diagnosis and follow-up of treatment do not exist in the clinical settings. following chemotherapy, patients take approximately 10-20 years to exhibit negative seroconversion with the conventional serology assays. Moreover, there is no vaccine available to prevent or treat CD. T. cruzi contains a complex cell surface consisting of several classes of glycoconjugates …

Developmental Effects Of Terpenes On Vanessa Cardui At Varying Temperatures, Mari Irving

Honors Undergraduate Theses

Secondary metabolites are organic compounds produced by plants that are not essential in growth, development, or reproduction. While they are not strictly necessary to complete the plant life cycle, secondary metabolites play key roles in functions like defense against herbivory and the moderation of symbiotic relationships. Terpenes are a major class of secondary metabolites present in all plants, and this class is hypothesized to have diversified in response to specific plant-herbivore interactions. These complex interactions are further complicated by changes in abiotic conditions experienced seasonally. Herbivory is a major biotic interaction that plays out across broad temporal and spatial scales …

Massard Prairie Restoration And Soil Microbiome Succession, Jeffrey M. Shaver, Emily S. Bellis, Chizuko Iwaki, Jake Qualls, Jay Randolph, Jeremiah Smith

Journal of the Arkansas Academy of Science

We have initially sequenced soil microbial DNA from 4 restored and 4 virgin tallgrass prairie soil samples from Ben Geren Park and Massard Prairie (Fort Smith, AR), respectively. As expected, the soil microbiomes are distinct, with several lineages of nitrogen-fixing bacteria more common in virgin tall grass prairie. However, we predict that as restoration of tallgrass prairie in Ben Geren Park progresses, the soil microbiome of restored prairie will more closely mirror those of the virgin prairie.

Clinostomum Marginatum (Digenea: Clinostomidae) From Fishes Of Crooked Creek, Boone And Marion Counties, Arkansas, Chris T. Mcallister, Henry W. Robison

Journal of the Arkansas Academy of Science

Crooked Creek is a renowned trophy (blue ribbon) Smallmouth Bass (Micropterus dolomieu) fishing stream. This fish, however, has been previously reported to commonly harbor some of the highest population densities of the digenean trematode parasite, Clinostomum marginatum, otherwise known as “yellow grub”. The parasite infects the orobranchial cavity, gills, and peritoneal cavity of Smallmouth Bass. Historical studies on this fish over the last 3 decades or more from various sites on the creek have shown that M. dolomieu also have high mean abundances but fish from upstream sites had lower prevalence than those collected from downstream sites. …

Hemoparasites (Apicomplexa: Hepatozoon; Kinetoplastida: Trypanosoma) Of Green Frogs, Rana Clamitans (Anura: Ranidae) From Arkansas, Chris T. Mcallister, Ryan P. Shannon, Thomas J. Fayton, Henry W. Robison

Journal of the Arkansas Academy of Science

The green frog, Rana clamitans, has been reported as a host of several hemoparasites, including trypanosomes and Hepatozoon spp. In Arkansas, however, there are no reports of any hemoparasites in R. clamitans nor from any other anuran from the state. We collected 9 green frogs from Polk County and blood was taken from their facial musculocutaneous vein in heparinized capillary tubes. Thin blood smears were also made and stained with DipQuick stain. Seven out of 9 (78%) R. clamitans were infected with hematozoans. Three (33%) were infected with an unknown species of Hepatozoon and 4 (44%) were infected with …

Helminth Parasites Of The Golden Topminnow, Fundulus Chrysotus (Cyprinidontiformes: Fundulidae) From Desha County, Arkansas, Chris T. Mcallister, Thomas J. Fayton, Henry W. Robison, Stanley E. Trauth, Donald G. Cloutman

Journal of the Arkansas Academy of Science

During July 2019, 21 Golden Topminnows (Fundulus chrysotus) were collected from an oxbow lake in McGehee, Desha County, Arkansas, and examined for parasites. Found were 4 taxa of endoparasites, including 3 digeneans (Clinostomum marginatum, Homalometron sp., and Posthodiplostomum minimum) and a nematode (Spiroxys contortus). We document a new host record for S. contortus and the first report of parasites in F. chrysotus from the lower Mississippi River Drainage.

A Natural Antimicrobial From Bacillus Subtilis As A Biosanitizer For Resilient Membrane Biofilms, Pratishtha Verma

Electronic Theses and Dissertations

The microbial attachment and colonization on separation membranes lead to biofilm formation. Some selective isolates within the biofilm constitutive microflora acquire resistance and emerge predominant over prolonged use of the membrane. Thus, proving the cleaning and sanitization protocols to be ineffective in adequately removing resilient biofilms. This subsequently leads to selecting microbial resistance within the constitutive microflora to almost all antimicrobial treatments and hence, creates a need to develop novel alternative strategies to control biofilm formation on membrane surfaces. The first research project under this study was designed to understand the microbial interactions and emergence of predominance within biofilm constitutive …

Interaction Of Streptomyces Closely Associated With Bacillus In Nitrogen-Limiting Conditions, Aminya Baniya

Electronic Theses and Dissertations

Biological Nitrogen Fixation is the process of conversion of atmospheric dinitrogen into ammonia which is performed by symbiotic as well as free-living diazotrophic bacteria. A previous project to isolate free-living nitrogen fixing bacteria from a natural prairie yielded Streptomyces which grew on nitrogen free medium. Genome sequencing of three isolates revealed the presence of a second 16S rRNA gene sequence aligning with Bacillus, however repeated streaking only yielded Streptomyces colonies. The aim of this research was to characterize the interaction of three Streptomyces isolates that grow under nitrogen-free conditions, and appeared to be associated with Bacillus. The separation of Bacillus …