Biology Commons^™

Human Impact Overrides Bioclimatic Drivers Of Red Fox Home Range Size Globally, Michael Main, Robert Davis, David Blake, Harriet Mills, Tim Doherty

Research Datasets

Aim Identifying the variables that influence animal home range size is important for understanding the biological requirements of individuals and their social interactions. Given their often broad distributions, carnivores are model organisms for studying range-wide determinants of home range size. Here we test predictions about environmental determinants of home range size for one of the world’s most widely distributed carnivores, the red fox (Vulpes vulpes).

Location Global

Methods We compiled a database of 70 mean home range estimates from 62 studies and four continents, which we analysed according to site-based temperature, precipitation, environmental productivity and human influence …

Hybrid Zone Barriers Comparative Data Set, David L. Field

Research Datasets

Many recent studies have addressed the mechanisms operating during the early stages of speciation, but surprisingly few studies have tested theoretical predictions on the evolution of strong reproductive isolation (RI). To help address this gap, we first undertook a quantitative review of the hybrid zone literature for flowering plants in relation to reproductive barriers. Then, using Populus as an exemplary model group, we analysed genome-wide variation for phylogenetic tree topologies in both early- and late-stage speciation taxa to determine how these patterns may be related to the genomic architecture of RI. Our plant literature survey revealed variation in barrier complexity …

Modelling Mycorrhizal Fungi Dispersal By The Mycophagous Swamp Wallaby (Wallabia Bicolor) [Dataset], Melissa Danks, Natalie Simpson, Todd F. Elliot, C.E. Timothy Paine, Karl Vernes

Research Datasets

Despite the importance of mammal-fungal interactions, tools to estimate the mammal-assisted dispersal distances of fungi are lacking. Many mammals actively consume fungal fruiting bodies, the spores of which remain viable after passage through their digestive tract. Many of these fungi form symbiotic relationships with trees and provide an array of other key ecosystem functions. We present a flexible, general model to predict the distance a mycophagous mammal would disperse fungal spores. We modelled the probability of spore dispersal by combining animal movement data from GPS-telemetry with data on spore gut-retention time. We test this model using an exemplar generalist mycophagist, …

Breastfeeding Practices 2008–2009 Among Chinese Mothers Living In Ireland: A Mixed Methods Study, Qianling Zhou, Katherine Younger, Tanya M. Cassidey, Wenyi Wang, John Kearney

Articles

Background

Migration to another country has a potential influence on breastfeeding practices. A significant difference in breastfeeding rates between Irish nationals and non-nationals has been reported. This study was conducted to explore breastfeeding practices of the Chinese in Ireland, one of the largest Irish ethnic groups, and to explore the influence of living in Ireland on breastfeeding practices. This is the first and the only migration study so far on breastfeeding practices among the Chinese in Ireland.

Methods

A sequential explanatory mixed methods approach was adopted. The first phase was a cross-sectional self-administered retrospective mailed survey, to explore breastfeeding practices …

Deriving Statistical Inference From The Application Of Artificial Neural Networks To Clinical Metabolomics Data, Kevin M. Mendez

Theses: Doctorates and Masters

Metabolomics data are complex with a high degree of multicollinearity. As such, multivariate linear projection methods, such as partial least squares discriminant analysis (PLS-DA) have become standard. Non-linear projections methods, typified by Artificial Neural Networks (ANNs) may be more appropriate to model potential nonlinear latent covariance; however, they are not widely used due to difficulty in deriving statistical inference, and thus biological interpretation. Herein, we illustrate the utility of ANNs for clinical metabolomics using publicly available data sets and develop an open framework for deriving and visualising statistical inference from ANNs equivalent to standard PLS-DA methods.

Analysis Of The Impact Of Professional Learning Teams On Teaching Practices And Student Achievement In Biology Using Dufour’S Model, Rowena K. Dawkins

Doctor of Education Dissertations

This mixed-methods study addresses the perceived impact of working in Professional Learning Teams (PLTs) on teaching practices and student achievement in biology. The study replicates Roberts’s (2010) study. Success in biology is important to the nation because it aligns with national efforts to prepare students to compete in global markets. Educators use PLTs to support development of educators and address student educational needs. PLTs share basic functions. Basic functions were defined using DuFour’s (2004) three big ideas of PLCs: ensuring students learn at high levels, promoting a collaborative culture, and focusing on academic results. Biology teachers completed an anonymous online …

First Report Of Molecular Characterization And Phylogeny Of Trichuris Fossor Hall, 1916 (Nematoda: Trichuridae), Malorri R. Hughes, Deborah A. Duffield, Dana K. Howe, Dee Denver

Biology Faculty Publications and Presentations

Because species of Trichuris are morphologically similar and ranges of host preference are variable, using molecular data to evaluate species delineations is essential for properly quantifying biodiversity of and relationships within Trichuridae. Trichuris fossor has been reported from Thomomys spp. (Rodentia: Geomyidae, ‘pocket gophers’) hosts based on morphological features alone. Partial 18S rRNA sequences for specimens identified as T. fossor based on morphology, along with sequences from 26 additional taxa, were used for a phylogenetic analysis. Evolutionary histories were constructed using maximum likelihood and Bayesian inference. In both analyses, the specimens fell within the Trichuris clade with 100% support and …

Reemergence Of Guadalupe Fur Seals In The U.S. Pacific Northwest: The Epidemiology Of Tranding Events During 2005–2016, Erin D'Agnese, Dyanna M. Lambourn, James Rice, Debbie Duffield, Jessica L. Huggins, Terry Spraker, Stephen A. Raverty, Tetiana Kuzmina, Micheal E. Grigg, Kristin Wilkinson, Multiple Additional Authors

Biology Faculty Publications and Presentations

Guadalupe fur seals (GFS), Arctocephalus philippii townsendi, an U.S. Endangered Species Act threatened pinniped, have recently reappeared in their historic range along the western seaboard of the continental United States. Starting 2005 through 2016, 169 GFSs stranded in Washington and Oregon, involving two designated unusual mortality events. The circumstances surrounding GFS strandings, mortality, and their increased presence in Oregon and Washington were analyzed during this study. Detailed necropsies, histopathology (n = 93), and epidemiological analysis found three main causes of death (COD): emaciation (44%), trauma (29%), and infectious disease (19%) and the factors associated with overall strandings and …

Crossing Boundaries: Steps Toward Measuring Undergraduates' Interdisciplinary Science Understanding, Brie Tripp, Sophia A. Voronoff, Erin Shortlidge

Biology Faculty Publications and Presentations

A desired outcome of education reform efforts is for undergraduates to effectively integrate knowledge across disciplines in order to evaluate and address real-world issues. Yet there are few assessments designed to measure if and how students think interdisciplinarily. Here, a sample of science faculty were surveyed to understand how they currently assess students’ interdisciplinary science understanding. Results indicate that individual writing-intensive activities are the most frequently used assessment type (69%). To understand how writing assignments can accurately assess students’ ability to think interdisciplinarily, we used a preexisting rubric, designed to measure social science students’ interdisciplinary understanding, to assess writing assignments …

Metabolic And Cardiovascular Marker Alterations During Critical Training In Wildland Firefighters, Shae Gurney

Graduate Student Theses, Dissertations, & Professional Papers

Introduction: Wildland firefighters (WLFFs) are confronted with numerous physical and mental stressors. Pre-fire season includes an intense 2-week critical training (CT) period; a preparatory phase of multiple activities that can result in injury, illness, and rhabdomyolysis. The purpose of this study was to identify physiologic changes in metabolic, inflammatory, and oxidative stress biomarkers during 2 weeks of CT in WLFFs.

Methods: Eighteen male (29.4 ± 1.1 yr, 182.1 ± 1.6 cm) and three female (26.7  2.6 yr, 169.5  4.2 cm) participants were recruited from a Type I interagency hotshot crew and monitored over their 2-week CT. Fitness was …

Characterizing The Requirements For The Matricellular Protein, Dccn, In Nervous System Function, Elizabeth L. Catudio Garrett

Graduate Student Theses, Dissertations, & Professional Papers

The brain is organized as a complex network of specialized neurons that communicate via a combination of electrical and chemical signals. Our brains function to generate movement, control organ function, or direct complex behaviors; all of which requires the ability to regulate the flow of communication between circuits and networks. Work in this thesis addresses two areas of neuron communication: first, how does the release of more than one neurotransmitter from a single neuron impact behavior, and second, are matricellular proteins (MCPs) key contributors to synaptic transmission and neuron function? The conserved CCN family of MCPs have a …

Heat For The Masses: Thermal Ecology Of The Western Tent Caterpillar, Victoria Dahlhoff

Graduate Student Theses, Dissertations, & Professional Papers

A unique feature of some gregarious, colonial insects is their ability to create external structures that alter environmental conditions for the entire (often family) group. A combination of physical alteration of local microhabitats and behavioral thermoregulation allows many of these animals to actively control their body temperatures, which allows them to regulate energy use and metabolism in variable thermal environments. Here I describe mechanisms of microhabitat modification and thermal regulation in the western tent caterpillar, Malacosoma californicum pluviale. Tent caterpillars build communal silk tents, whose temperatures can rise substantially above ambient air temperature. I experimentally manipulated colony sizes and examined …

Digitized Galapagos Tortoise Whaling Data From 1831-1868, Cyler Norman Conrad, Noah Garwood, James P. Gibbs

Anthropology Datasets

This repository includes a spreadsheet of digitized Galapagos tortoise count data originally transcribed from whaling and sealing logbooks by Charles H. Townsend and published in 1925. Notes are included which describe how the counts were digitized. Data published in Townsend (1925) and digitized here are presented in: Conrad, C. and Gibbs, J.P. (in preparation). Chapter 4: The Era of Exploitation: 1535-1959. In Galapagos Giant Tortoises, Gibbs, James P., Linda J. Cayot and Wacho Tapia (eds.). Elsevier.

The Ability Of Fragmented Kelp Forests To Mitigate Ocean Acidification And The Effects Of Seasonal Upwelling On Kelp-Purple Sea Urchin Interactions, Kindall A. Murie

Cal Poly Humboldt theses and projects

Bull kelp (Nereocystis leutkeana) forests along the coast for northern California have decreased dramatically as a result of a ‘perfect storm’ of multiple environmental stressors. The disappearance of a predatory sea star and subsequent increase in purple sea urchins (Strongylocentrotus purpuratus) and the recurrence of marine heat waves have caused these once diverse ecosystems to be rapidly converted into relative species-depauperate urchin barrens. By examining the interactive effects of both a rapidly changing abiotic environment and the increase in urchin grazing pressure that is affecting this vital ecosystem, we can better understand its ultimate fate and …

Micronutrient Supplementation In Relation To Hair Loss Syndrome In California Mule Deer, Max W. Marquez

Cal Poly Humboldt theses and projects

The Jawbone deer herd has been monitored on their wintering grounds since the 1950s and recently began decreasing over the last several years. The decline prompted an investigation into the reasons why. Coinciding with the population decline is the appearance of hair loss syndrome and two species of exotic lice. In order to evaluate the effects of hair loss syndrome and the influence of exotic lice infestation, 38 wild does from the herd were used in a modified-before-after-control-impact study. Does were treated with micronutrients selenium and copper via boluses in winter (December 2013-January 2014). Selenium treatment, at a dose of …

The Rattle Call: A Female-Specific Vocalization In Steller's Jays, Kachina L. Rowland

Cal Poly Humboldt theses and projects

While the elaborate songs of male passerines are well documented for their role in intrasexual resource competition and mate attraction, vocalizations used in female competition are poorly understood. Research has suggested that the female-specific rattle call of Steller’s jays (Cyanocitta stelleri) is used in competition for access to a territory and mate. I describe structural properties of the rattle call, and compare life history traits of individual females to rattle call occurrence. I used two rates to quantify rattle call occurrence from 20 females: rattles per observation period (RPO), and proportion of observations with a rattle call (POR) …