Biology Commons^™

Biology Of Human Health And Disease Bio 482g, Michael Cerbo

Library Impact Statements

No abstract provided.

A Case For Using Genomics And A Bioinformatics Pipeline To Develop Sensitive And Species-Specific Pcr-Based Diagnostics For Soil-Transmitted Helminths, Jessica R. Grant, Nils Pilotte, Steven A. Williams

Biological Sciences: Faculty Publications

The balance of expense and ease of use vs. specificity and sensitivity in diagnostic assays for helminth disease is an important consideration, with expense and ease often winning out in endemic areas where funds and sophisticated equipment may be scarce. In this review, we argue that molecular diagnostics, specifically new assays that have been developed with the aid of next-generation sequence data and robust bioinformatic tools, more than make up for their expense with the benefit of a clear and precise assessment of the situation on the ground. Elimination efforts associated with the London Declaration and the World Health Organization …

Identification Of Key Parameters Controlling Demographically Structured Vegetation Dynamics In A Land Surface Model: Clm4.5(Fates), Elias C. Massoud, Chonggang Xu, Rosie A. Fisher, Ryan G. Knox, Anthony P. Walker, Shawn P. Serbin, Bradley O. Christoffersen, Jennifer A. Holm, Lara M. Kueppers, Daniel M. Ricciuto

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Vegetation plays an important role in regulating global carbon cycles and is a key component of the Earth system models (ESMs) that aim to project Earth's future climate. In the last decade, the vegetation component within ESMs has witnessed great progress from simple “big-leaf” approaches to demographically structured approaches, which have a better representation of plant size, canopy structure, and disturbances. These demographically structured vegetation models typically have a large number of input parameters, and sensitivity analysis is needed to quantify the impact of each parameter on the model outputs for a better understanding of model behavior. In this study, …

Effect Of Collagen Supplementation In Broiler Feed: Influence On Productive Performance And Muscle Quality In Broiler Chicken, Ramesh Nurubhasha, Vijaya R. Dirisala, Satish Thirumalasetti, Hanumohan Reddy Konatham, Simhachalam G, Satheesh Ingilala, Sampath Kumar

Karbala International Journal of Modern Science

Present study was conducted to evaluate different strategies for feed formulation in commercial broiler production. A total of 16 male newly hatched broiler chickens (Gallus gallus domesticus) were fed with different formulated diets in 3 feeding phases, starter (1–11 d), grower (12-22 d) and finisher (23–33 d). Four strategies of feed formulation (F1, F2, F3 and F4) were compared; where in F1 group was fed with traditional diet, F2 and F3 were fed with traditional diet after supplementation with 10% & 20 % paneer respectively. The last group (F4) was fed with traditional diet supplemented with 10% collagen …

Properties Of Concrete Modified With Ultra-Fine Slag, Panga Narasimha Reddy, Javed Ahmed Naqash

Karbala International Journal of Modern Science

The supplementary cementitious materials (SCM) can be used as a replacement of cement in the construction industry to minimize the drawbacks of normal concrete such as the emission of carbon dioxide so as to be eco-friendly. This paper presents the effect of ultra-fine slag (i.e. 25% of alccofine) as a replacement of cement for different water to binder ratios (i.e. 0.38, 0.4 and 0.45). The effect of alccofine on the concrete strength properties were studied at 7 and 28 days wherein considerable strength enhancement was observed compared to normal concrete. Thermogravimetric analysis was also carried out in which mass loss …

Analytical Approach To Investigation Of Free Vibration Of Thin Rectangular Plate Immersed In Fluid, Resting On Winkler And Pasternak Foundations, Obanishola Sadiq, Gbeminiyi Sobamowo, Saheed Salawu

Karbala International Journal of Modern Science

Dynamic behaviour of free vibration of rectangular plate is investigated. This study considered an analytical approach to investigation of free vibration of thin rectangular plate immersed in fluid, resting on Winkler and Pasternak foundations.The governing nonlinear partial differential equation is analyzed using two-dimensional differential transform method. The accuracy of the analytical solutions obtained is verified with existing results in literature and confirmed in excellent agreement. Thereafter, the analytical solutions are used for investigation of effect of elastic foundation, fluid and aspect ratio on vibrating plate.From the result, it is observed that, increase elastic foundation parameters increases natural frequency, increase aspect …

Editorial Board

Karbala International Journal of Modern Science

No abstract provided.

Developmental And Molecular Changes Underlying The Vernalization-Induced Transition To Flowering In Aquilegia Coerulea (James), Bharti Sharma, Timothy A. Batz, Rakesh Kaundal, Elena M. Kramer, Uriah R. Sanders, Valerie J. Mellano, Naveen Duhan, Rousselene B. Larson

Center for Integrated Biosystems Publications

Reproductive success in plants is dependent on many factors but the precise timing of flowering is certainly among the most crucial. Perennial plants often have a vernalization or over-wintering requirement in order to successfully flower in the spring. The shoot apical meristem undergoes drastic developmental and molecular changes as it transitions into inflorescence meristem (IM) identity, which then gives rise to floral meristems (FMs). In this study, we have examined the developmental and gene expression changes underlying the transition from the vegetative to reproductive phases in the basal eudicot Aquilegia coerulea, which has evolved a vernalization response independently relative …

Reorganization Of Surviving Mammal Communities After The End-Pleistocene Megafaunal Extinction, Anikó B. Tóth, S. Kathleen Lyons, W. Andrew Barr, Anna K. Behrensmeyer, Jessica L. Blois, René Bobe, Matt Davis, Andrew Du, Jussi T. Eronen, J. Tyler Faith, Danielle Fraser, Nicholas J. Gotelli, Gary R. Graves, Advait M. Jukar, Joshua H. Miller, Silvia Pineda-Munoz, Laura C. Soul, Amelia Villaseñor, John Alroy

School of Biological Sciences: Faculty Publications

Large mammals are at high risk of extinction globally. To understand the consequences of their demise for community assembly, we tracked community structure through the end- Pleistocene megafaunal extinction in North America.We decomposed the effects of biotic and abiotic factors by analyzing co-occurrence within the mutual ranges of species pairs. Although shifting climate drove an increase in niche overlap, co-occurrence decreased, signaling shifts in biotic interactions. Furthermore, the effect of abiotic factors on cooccurrence remained constant over time while the effect of biotic factors decreased. Biotic factors apparently played a key role in continental-scale community assembly before the extinctions. Specifically, …

Insect Hybridization And Climate Change, Erica Larson, R. M. Tinghitella, Scott A. Taylor

Biological Sciences: Faculty Scholarship

Contemporary global change is altering ecosystems at an unprecedented pace and scale. This critical period is a crisis for biodiversity, but the perturbations caused by global environmental change also offer new opportunities to study the evolution of species boundaries—their persistence, formation, or collapse—over rapid evolutionary timescales. Increasing temperature means and fluctuations have the potential to alter gene flow between species through changes in species distributions, interactions, life history, and temperature-dependent behavior. This is particularly true for insects, whose geographic ranges, behaviors, and life history traits are temperature dependent. Here, we review the potential for climate change to influence gene flow …

Precipitation Mediates Sap Flux Sensitivity To Evaporative Demand In The Neotropics, Charlotte Grossiord, Bradley O. Christoffersen, Aura M. Alonso-Rodríguez, Kristina Anderson-Teixeira, Heidi Asbjornsen, Luiza Maria T. Aparecido, Z. Carter Berry, Christopher Baraloto, Damien Bonal, Isaac Borrego

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Transpiration in humid tropical forests modulates the global water cycle and is a key driver of climate regulation. Yet, our understanding of how tropical trees regulate sap flux in response to climate variability remains elusive. With a progressively warming climate, atmospheric evaporative demand [i.e., vapor pressure deficit (VPD)] will be increasingly important for plant functioning, becoming the major control of plant water use in the twenty-first century. Using measurements in 34 tree species at seven sites across a precipitation gradient in the neotropics, we determined how the maximum sap flux velocity (vmax) and the VPD threshold at which …

Plasticity Of Foot Muscle And Cardiac Thermal Limits In The Limpet Lottia Limatula From Locations With Differing Temperatures, Terrance Wang, Richelle L. Tanner, Eric J. Armstrong, David R. Lindberg, Jonathon H. Stillman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Species distributions are shifting in response to increased habitat temperatures as a result of ongoing climate change. Understanding variation in physiological plasticity among species and populations is important for predicting these distribution shifts. Interspecific variation in intertidal ectotherms’ short-term thermal plasticity has been well established. However, intraspecific variation among populations from differing thermal habitats remains a question pertinent to understanding the effects of climate change on species’ ranges. In this study, we explored upper thermal tolerance limits and plasticity of those limits using a foot muscle metric and 2 cardiac metrics (Arrhenius breakpoint temperature, ABT, and flatline temperature, FLT) in …

Phylogenomics Resolves Major Relationships And Reveals Significant Diversification Rate Shifts In The Evolution Of Silk Moths And Relatives, J. R. Barber

Biology Faculty Publications and Presentations

Background: Silkmoths and their relatives constitute the ecologically and taxonomically diverse superfamily Bombycoidea, which includes some of the most charismatic species of Lepidoptera. Despite displaying spectacular forms and diverse ecological traits, relatively little attention has been given to understanding their evolution and drivers of their diversity. To begin to address this problem, we created a new Bombycoidea-specific Anchored Hybrid Enrichment (AHE) probe set and sampled up to 571 loci for 117 taxa across all major lineages of the Bombycoidea, with a newly developed DNA extraction protocol that allows Lepidoptera specimens to be readily sequenced from pinned natural history collections.

Results: …

Development And Characterization Of An Antimicrobial Polydopamine Coating For Conservation Of Humpback Whales., Ariana Tyo, Sonja Welch, Maureen Hennenfent, Pegah Kord Fooroshani, Bruce P Lee, Rupak Rajachar

Michigan Tech Publications, Part 1

Migration patterns of humpback whales have been monitored using 316L stainless steel (SS) satellite telemetry tags. The potential for tissue infection and necrosis is increased if the bacteria, naturally a part of the diverse microbiome on the skin of humpback whales, can adhere to and colonize the surface of the tags. Polydopamine (pDA) has the potential to prevent the adhesion of one of the most prevalent bacterial strains on the surface of the skin of cetaceans (

Mouth Function Determines The Shape Oscillation Pattern In Regenerating Hydra Tissue Spheres, R. Wang, T. Goel, K. Khazoyan, Ziad Sabry , '21, H. J. Quan, P. H. Diamond, Eva-Maria S. Collins

Biology Faculty Works

Hydra is a small freshwater polyp capable of regeneration from small tissue pieces and from aggregates of cells. During regeneration, a hollow bilayered sphere is formed that undergoes osmotically driven shape oscillations of inflation and rupture. These oscillations are necessary for successful regeneration. Eventually, the oscillating sphere breaks rotational symmetry along the future head-foot axis of the animal. Notably, the shape oscillations show an abrupt shift from large-amplitude, long-period oscillations to small-amplitude, short-period oscillations. It has been widely accepted that this shift in oscillation pattern is linked to symmetry breaking and axis formation, and current theoretical models of Hydra symmetry …

Bright Split Red Fluorescent Proteins For The Visualization Of Endogenous Proteins And Synapses, Siyu Feng, Aruna Varshney, Doris Coto Villa, Cyrus Modavi, John Kohler, Fatima Farah, Shuqin Zhou, Nebat Ali, Joachim D. Müller, Miri Vanhoven, Bo Huang

Faculty Publications, Biological Sciences

Self-associating split fluorescent proteins (FPs) are split FPs whose two fragments spontaneously associate to form a functional FP. They have been widely used for labeling proteins, scaffolding protein assembly and detecting cell-cell contacts. Recently developments have expanded the palette of self-associating split FPs beyond the original split GFP1-10/11. However, these new ones have suffered from suboptimal fluorescence signal after complementation. Here, by investigating the complementation process, we have demonstrated two approaches to improve split FPs: assistance through SpyTag/SpyCatcher interaction and directed evolution. The latter has yielded two split sfCherry3 variants with substantially enhanced overall brightness, facilitating the tagging of endogenous …

What Do Agricultural And Biological Science Students Use? A Bibliometric Analysis Of Undergraduate Research Projects, Jerome Idiegbeyan-Ose, Ayooluwa Aregbesola, Sols Owolabi, Toluwani Eyiolorunshe, Ayotunde Owolabi

Library Philosophy and Practice (e-journal)

The study investigate the citation pattern of undergraduate projects in a private university, Nigeria. Bibliometric method was adopted for the study to analyze the information sources cited in the research projects. The coverage of the study was from 2015 to 2018 set of graduates. Findings revealed that Animal Science programme accounted for the highest citations, while Agricultural Economics had the lowest citations. It was also discovered that an average of 49 citations per project were recorded. Journal articles and books were the most cited materials. The paper concluded and made recommendations.

Pooling As A Strategy For The Timely Diagnosis Of Soil-Transmitted Helminths In Stool: Value And Reproducibility, Marina Papaiakovou, James Wright, Nils Pilotte, Darren Chooneea, Fabian Schär, James E. Truscott, Julia C. Dunn, Iain Gardiner, Judd L. Walson, Steven A. Williams, D. Timothy J. Littlewood

Biological Sciences: Faculty Publications

Background: The strategy of pooling stool specimens has been extensively used in the field of parasitology in order to facilitate the screening of large numbers of samples whilst minimizing the prohibitive cost of single sample analysis. The aim of this study was to develop a standardized reproducible pooling protocol for stool samples, validated between two different laboratories, without jeopardizing the sensitivity of the quantitative polymerase chain reaction (qPCR) assays employed for the detection of soil-transmitted helminths (STHs). Two distinct experimental phases were recruited. First, the sensitivity and specificity of the established protocol was assessed by real-time PCR for each one …

Red Oak Seedlings As Indicators Of Deer Browse Pressure: Gauging The Outcome Of Different White-Tailed Deer Management Approaches, Bernd Blossey, Paul Curtis, Jason Boulanger, Andrea Davalos

Biology Faculty Publications

After decades of high deer populations, North American forests have lost much of their previous biodiversity. Any landscape‐level recovery requires substantial reduc‐ tions in deer herds, but modern societies and wildlife management agencies appear unable to devise appropriate solutions to this chronic ecological and human health crisis. We evaluated the effectiveness of fertility control and hunting in reducing deer impacts at Cornell University. We estimated spring deer populations and planted Quercus rubra seedlings to assess deer browse pressure, rodent attack, and other factors compromising seedling performance. Oak seedlings protected in cages grew well, but deer annually browsed ≥60% of unprotected …

Biology Of Medicine Bio 481x, Michael Cerbo

Library Impact Statements

No abstract provided.

Fossils - A Window To God's Creation, Ryan Bebej, Ralph Stearley

University Faculty Publications and Creative Works

A journey into the world of fossils and what they can teach us about God.

Fall And Winter Roosting Ecology Of Southeastern Myotis And Rafinesque's Big-Eared Bats In The Cache River National Wildlife Refuge, Stacy Jae Scherman

Student Theses and Dissertations

Tree roosts in bottomland forests are critical resources required year-round for Rafinesque’s big-eared bats (Corynorhinus rafinesquii; CORA) and Southeastern myotis (Myotis austroriparius; MYAU). I characterized their roost selection and activity patterns in fall and winter in Cache River National Wildlife Refuge, Arkansas. In October-December of 2016 and 2017, I radio-tracked 19 CORAs and 14 MYAUs to 33 and 42 roost trees, respectively. Both species switched their roosting habits (e.g., MYAUs switched tree species and CORAs spent more time in roosts), but remained active when temperatures approached freezing. Additionally, CORA selected trees with large internal volume and diameter at breast height …

Metatranscriptomic Analyses Of Diel Metabolic Functions During A Microcystis Bloom In Western Lake Erie (United States), Emily J. Davenport, Michelle J. Neudeck, Paul G. Matson, George S. Bullerjahn, Timothy W. Davis, Steven W. Wilhelm, Maddie K. Denney, Lauren E. Krausfeldt, Joshua M. Stough, Kevin A. Meyer, Gregory J. Dick, Thomas H. Johengen, Erika Lindquist, Susannah G. Tringe, Robert Michael Mckay

Biological Sciences Faculty Publications

This study examined diel shifts in metabolic functions of spp. during a 48-h Lagrangian survey of a toxin-producing cyanobacterial bloom in western Lake Erie in the aftermath of the 2014 Toledo Water Crisis. Transcripts mapped to the genomes of recently sequenced lower Great Lakes isolates showed distinct patterns of gene expression between samples collected across day (10:00 h, 16:00 h) and night (22:00 h, 04:00 h). Daytime transcripts were enriched in functions related to Photosystem II (e.g., ), nitrogen and phosphate acquisition, cell division (), heat shock response (, ), and uptake of inorganic carbon (, ). Genes transcribed during …

Characterization Of The Microbiome And Bioluminescent Symbionts Across Life Stages Of Ceratioid Anglerfishes Of The Gulf Of Mexico, Lindsay L. Freed, Cole Easson, Lydia Baker, D. Fenolio, Tracey Sutton, Yasmin Khan, Patricia Blackwelder, Tory Hendry, Jose Lopez

Biology Faculty Articles

The interdependence of diverse organisms through symbiosis reaches even the deepest parts of the oceans. As part of the DEEPEND project (deependconsortium.org) research on deep Gulf of Mexico biodiversity, we profiled the bacterial communities (‘microbiomes’) and luminous symbionts of 36 specimens of adult and larval deep-sea anglerfishes of the suborder Ceratioidei using 16S rDNA. Transmission Electron Microscopy was used to characterize the location of symbionts in adult light organs (esca). Whole larval microbiomes, and adult skin and gut microbiomes, were dominated by bacteria in the genera Moritella and Pseudoalteromonas genera. 16S rDNA sequencing results from adult fishes corroborate …

Are Humans Natural? Part 2: Exploring Human-Nature Relational Values And The Balance Of Nature, Nathan Ruhl

Open Educational Resources

This learning module is part of a series of modules that seeks to help students develop human-nature relational values. Relational values are more readily developed when the methods employed reference species/environments/landscapes/situations that students are familiar with already and may encounter during their everyday lives. In this activity students are asked to consider whether nature is in balance. The idea that nature is in balance extends deep into human history, but modern scientific evidence clearly demonstrates that nature is not in balance. Despite scientific evidence, the perception that nature is stable or in balance persists in human culture. This activity challenges …

Are Humans Natural? Part 3: Nature Relatedness And The American Dream, Nathan Ruhl, Taylor Dobson

Open Educational Resources

This learning module is part of a series of activities designed to encourage students to develop relational values with nature. In this activity, students reflect on their relationship with nature and consider the impact of their plans/goals for the future on the environment and the larger goal of sustainability. Students evaluate their relationship with nature through the Nature Relatedness (NR-6) Test (Nisbet and Zelenski, 2013), compare their NR-6 score to others, consider how their goals (“dreams”) are related to the American Dream, and speculate on the attainability of sustainability given our individually driven goals for the future. This activity challenges …

"The Dead Shall Be Raised": Multidisciplinary Analysis Of Human Skeletons Reveals Complexity In 19th Century Immigrant Socioeconomic History And Identity In New Haven, Connecticut, Gary P. Aronsen, Lars Fehren-Schmitz, John Krigbaum, George D. Kamenov, Gerald J. Conlogue, Christina Warinner, Andrew T. Ozga, Krithivasan Sankaranarayanan, Anthony Griego, Daniel W. Deluca, Howard T. Eckels, Romuald K. Byczkiewicz, Tania Grgurich, Natalie A. Pelletier, Sarah A. Brownlee, Ana Marichal, Kylie Williamson, Yukiko Tonoike, Nicholas F. Bellantoni

Biology Faculty Articles

In July 2011, renovations to Yale-New Haven Hospital inadvertently exposed the cemetery of Christ Church, New Haven, Connecticut’s first Catholic cemetery. While this cemetery was active between 1833 and 1851, both the church and its cemetery disappeared from public records, making the discovery serendipitous. Four relatively well-preserved adult skeletons were recovered with few artifacts. All four individuals show indicators of manual labor, health and disease stressors, and dental health issues. Two show indicators of trauma, with the possibility of judicial hanging in one individual. Musculoskeletal markings are consistent with physical stress, and two individuals have arthritic indicators of repetitive movement/specialized …

Diversity And Abundance Of Soil Microbes Differ Along A Forest-Pasture Transect, Hannah Suli, Ashley Schumann, Cleo Bickley, Jasmine Rodriguez

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Responses Of Bouteloua Eriopoda And Soil Stability To Precipitation Extremes In Chihuahuan Desert Grassland, Laura Kay Sadorf

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.

Evaluating The Effect Of Time Of Day On Singing Behavior In Anna’S Hummingbirds, Adrian D. Macedo, Maxine R. Mota

IdeaFest: Interdisciplinary Journal of Creative Works and Research from Cal Poly Humboldt

No abstract provided.