Biology Commons^™

Principles Of Biology I & Ii (Atlm), Candice Chatman, Alvin Harmon, Deon O'Bryant, Stephen Klusza

Biological Sciences Grants Collections

This Grants Collection for Principles of Biology I & II was created under a Round Twelve ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Hinge Region In Dna Packaging Terminase Pul15 Of Herpes Simplex Virus: A Potential Allosteric Target For Antiviral Drugs, Lana F. Thaljeh, J. Ainsley Rothschild, Misagh Naderi, Lyndon M. Coghill, Jeremy M. Brown, Michal Brylinski

Faculty Publications

Approximately 80% of adults are infected with a member of the herpesviridae family. Herpesviruses establish life-long latent infections within neurons, which may reactivate into lytic infections due to stress or immune suppression. There are nine human herpesviruses (HHV) posing health concerns from benign conditions to life threatening encephalitis, including cancers associated with viral infections. The current treatment options for most HHV conditions mainly include several nucleoside and nucleotide analogs targeting viral DNA polymerase. Although these drugs help manage infections, their common mechanism of action may lead to the development of drug resistance, which is particularly devastating in immunocompromised patients. Therefore, …

Hinge Region In Dna Packaging Terminase Pul15 Of Herpes Simplex Virus: A Potential Allosteric Target For Antiviral Drugs, Lana F. Thaljeh, J. Ainsley Rothschild, Misagh Naderi, Lyndon M. Coghill

Faculty Publications

Approximately 80% of adults are infected with a member of the herpesviridae family. Herpesviruses establish life-long latent infections within neurons, which may reactivate into lytic infections due to stress or immune suppression. There are nine human herpesviruses (HHV) posing health concerns from benign conditions to life threatening encephalitis, including cancers associated with viral infections. The current treatment options for most HHV conditions mainly include several nucleoside and nucleotide analogs targeting viral DNA polymerase. Although these drugs help manage infections, their common mechanism of action may lead to the development of drug resistance, which is particularly devastating in immunocompromised patients. Therefore, …

Childhood Habits And Their Effects On The Oral And Maxillofacial Structure Of Adolescents, Kelly Tarmon

Fall Showcase for Research and Creative Inquiry

This research proposal provides a background on childhood habits and how they effect the structure of the face and jaw. Proposed methods and results provide a way to look at adolescents rather than children.

Human Biology Oer, Bio 1100, Course Outline, Tatiana Voza

Open Educational Resources

This course will include selected biological concepts, including the chemical basis of life, cell structure and division, a broad survey of the major systems of the human body with a special emphasis on human health disease, human evolution and ecology. This course should provide students who do not plan to continue in the sciences or pre-health programs with a working knowledge of life science that will be useful in making informed decisions on health and the environment

Impact Of The Degree Of Urbanization On Bird Abundance And Diversity, Gabrielle Doyle, Sheila Garcia, Sophie Kidd, Tra'dayja Smith

Fall Showcase for Research and Creative Inquiry

Bird diversity and abundance in Farmville, Virginia. Sampling twice a day, four days a week.

Reading Guides For Openstax Concepts Of Biology, Kathryn Dye

Biological Sciences Ancillary Materials

This set of reading guides for OpenStax Concepts of Biology (https://openstax.org/details/books/concepts-biology) was created under a Round Thirteen Mini-Grant for Ancillary Materials Creation and Revision.

These activity-focused guides cover the following chapters of the text:

• Chapter 1 - Introduction to Biology;
• Chapter 2 - Chemistry of Life;
• Chapter 4 - How Cells Obtain Energy;
• Chapter 5 - Photosynthesis

Where To Forage When Afraid: Does Perceived Risk Impair Use Of The Foodscape?, Samantha P.H. Dwinnell, Hall Sawyer, Jill E. Randall, Jeffery L. Beck, Jennifer S. Forbey, Gary L. Fralick, Kevin L. Monteith

Biology Faculty Publications and Presentations

The availability and quality of forage on the landscape constitute the foodscape within which animals make behavioral decisions to acquire food. Novel changes to the foodscape, such as human disturbance, can alter behavioral decisions that favor avoidance of perceived risk over food acquisition. Although behavioral changes and population declines often coincide with the introduction of human disturbance, the link(s) between behavior and population trajectory are difficult to elucidate. To identify a pathway by which human disturbance may affect ungulate populations, we tested the Behaviorally Mediated Forage‐Loss Hypothesis, wherein behavioral avoidance is predicted to reduce use of available forage adjacent to …

Red Drum (Sciaenops Ocellatus), Alois Romanowski, David Kerstetter

All Scans: Kerstetter Fisheries and Avian Ecology 3D Scan Series

Red Drum (Sciaenops ocellatus) collected as-is on the beach of Anclote Key, Florida in 1999.

Distribution And Abundance Of Vibrio Parahaemolyticus In Surficial Estuarine Sediment From North Inlet, Sc, Usa, India Briana Gartmon

Theses and Dissertations

Vibrio parahaemolyticus is a ubiquitous coastal organism that causes gastroenteritis (vibriosis) after ingestion of mishandled or undercooked seafood. Cases of vibriosis have increased rapidly in the past decade. V. parahaemolyticus densities have historically been associated with an increase in sea surface water temperatures, but recent shellfish bed closures in fall and winter months in cooler regions (the Baltic Sea, the Pacific NW, and New England) suggest that there may be additional environmental parameters that affect densities of V. parahaemolyticus. The vertical distribution of V. parahaemolyticus was assessed in the pristine North Inlet Estuary (SC, USA). The goal of this …

Escaping The Evolutionary Trap? Sex Chromosome Turnover In Basilisks And Related Lizards (Corytophanidae: Squamata), Stuart V. Nielsen, Irán Andira Guzmán-Méndez, Tony Gamble, Madison Blumer, Brendan J. Pinto, Lukáš Kratochvíl, Michail Rovatsos

Biological Sciences Faculty Research and Publications

Most pleurodont lizard families (anoles, iguanas and their relatives), with the exception of the basilisks and casquehead lizards (family Corytophanidae), share homologous XX/XY sex chromosomes, syntenic with chicken chromosome 15. Here, we used a suite of methods (i.e. RADseq, RNAseq and qPCR) to identify corytophanid sex chromosomes for the first time. We reveal that all examined corytophanid species have partially degenerated XX/XY sex chromosomes, syntenic with chicken chromosome 17. Transcriptomic analyses showed that the expression of X-linked genes in the corytophanid, Basiliscus vittatus, is not balanced between the sexes, which is rather exceptional under male heterogamety, and unlike the dosage-balanced …

Titration Of A Newtown Creek Environmental Water Sample To Determine The Amount Of Chloride Ions [Chemistry], Kevin Mark

Open Educational Resources

Main Course Learning Objectives:

The General Chemistry 1 (SCC 201) course has multiple course learning objectives, which articulate key introductory chemistry concepts that all STEM students should possess. In particular, the Newtown Creek titration experiment aligns with SCC 201 learning objectives of:

1. Demonstrate an appreciation of the role of chemistry in various aspects of life
2. Perform basic laboratory skills such as the proper execution of titration techniques
3. Describe and explain the fundamental chemistry concept of solution concentration
4. Analyze and represent experimental data in tables and graphs, interpret experimental results and write laboratory reports

In the SCC 201 laboratory, students are …

Diverse Deep-Sea Anglerfishes Share A Genetically Reduced Luminous Symbiont That Is Acquired From The Environment, Lydia Baker, Lindsay L. Freed, Cole Easson, Jose Lopez, Dante Fenolio, Tracey Sutton, Spencer Nyholm, Tory Hendry

Biology Faculty Articles

Deep-sea anglerfishes are relatively abundant and diverse, but their luminescent bacterial symbionts remain enigmatic. The genomes of two symbiont species have qualities common to vertically transmitted, host-dependent bacteria. However, a number of traits suggest that these symbionts may be environmentally acquired. To determine how anglerfish symbionts are transmitted, we analyzed bacteria-host codivergence across six diverse anglerfish genera. Most of the anglerfish species surveyed shared a common species of symbiont. Only one other symbiont species was found, which had a specific relationship with one anglerfish species, Cryptopsaras couesii. Host and symbiont phylogenies lacked congruence, and there was no statistical support …

Microwave Solventless Synthesis Of Meso-Tetrakis (Pentafluorophenyl)Poprphyrin (Tppf20) And Tris(Pentafluorophenyl))Corrole [Chemistry], Sunaina Singh

Open Educational Resources

Organic chemistry is a two-semester course (Organic Chemistry I, SCC 251 and Organic Chemistry II, SCC 252) required for majors in Biology. The SCC 251 course has been designated for the Integrative Learning Core Competency as well the Digital Communication Ability. This course emphasizes the synthesis, structure, reactivity, and mechanisms of reaction of organic compounds. Laboratory stresses various organic synthetic and analytic techniques (distillation, extraction, chromatography and spectroscopy).

This lab provided an opportunity for students to go deeper with the chemistry content by correlating to the concepts they learned in General Chemistry courses such as Valence shell electron pair repulsion …

Leopards Are Good To Think With: Spotting The Zanzibar Leopard In Jozani Forest, Andrew Weier

Independent Study Project (ISP) Collection

In this project, the modern narrative of the Zanzibar leopard was studied in Jozani-Chwaka Bay National Park. Game cameras were installed and various locations around the national park to try and gather primary evidence that supported the existence of a leopard population in the forest. In addition, local community members were interviewed about recent leopard related activities. No biological evidence was gathered that supported the existence of the Zanzibar leopard and information collected from interviews indicated a potential shift in which other organisms are considered leopards. Recommendations were made for future research to be able to better understand the complex …

Sediment Respiration Pulses In Intermittent Rivers And Ephemeral Streams, D. Von Schiller, T. Daltry, Dev Niyogi

Biological Sciences Faculty Research & Creative Works

Intermittent rivers and ephemeral streams (IRES) may represent over half the global stream network, but their contribution to respiration and carbon dioxide (CO₂) emissions is largely undetermined. In particular, little is known about the variability and drivers of respiration in IRES sediments upon rewetting, which could result in large pulses of CO₂. We present a global study examining sediments from 200 dry IRES reaches spanning multiple biomes. Results from standardized assays show that mean respiration increased 32-fold to 66-fold upon sediment rewetting. Structural equation modeling indicates that this response was driven by sediment texture and organic …

Modeling The Effects Of Climate Change On The Distribution Of Tagetes Lucida Cav. (Asteraceae), Julianna Katherine Schaefer Kurpis, Miguel Angel Serrato-Cruz, Teresa Patricia Feria-Arroyo

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

Climate change threatens the future distributions of native, tropical species all around the world as increasing global temperature and, in several regions decreasing precipitation cause less suitable habitat to become available. Of particular interest in this paper is to construct a model of the potential impact of climate change on the distribution of the Pericón or Mexican Mint Marigold, Tagetes lucida, a native medicinal plant of important cultural and economic value in Mexico. We projected the future distribution of this species using the maximum entropy algorithm (MaxEnt) and five bioclimatic variables. Models were created using three global circulation …

Investigation Of The Mechanisms Governing Carrier Domain Translocation In S. Aureus Pyruvate Carboxylase, Joshua Hakala

Dissertations (1934 -)

A central debate in protein biochemistry focuses on the mechanism by which ligands contribute to conformational changes in proteins. Two primary hypotheses describe this process: the induced-fit hypothesis and the conformational ensembles hypothesis. In contrast to the induced-fit hypothesis, the conformational ensembles hypothesis states that the protein pre-exists in multiple conformational states, with ligand binding shifting the equilibrium towards a preferred conformation. The contribution of ligand binding to large-scale conformational changes is particularly relevant to multi-domain “swinging-arm” enzymes, for which pyruvate carboxylase (PC) serves as a well characterized paradigm system. PC catalyzes the ATP-dependent carboxylation of pyruvate to oxaloacetate. The …

Insect Population Dynamics, Varietal Preference And Performance Of Organic Bio-Pesticides, Anitha Chitturi, Jeanine Davis, Margaret Bloomquist, Franklin Quarcoo, Kokoasse Kpomblekou-A, Desmond Mortley

Professional Agricultural Workers Journal

Abstract

Organic farming prohibits use of synthetic agrochemicals and encourages use of Integrated Pest Management (IPM) methods. States in the Southeastern US generally lag behind the rest of the country in organic vegetable production partly because of high insect pressures that make it difficult to grow vegetables without pesticides. This study on summer squash (Cucurbita pepo), grown using organic management practices, was conducted at a research station located in Mills River, North Carolina. The objectives of the study were to assess insect population dynamics and to evaluate performance of three OMRI-approved bio-pesticides: Azadirachtin, Pyrethrin and Spinosad against major …

Wandering Woodpeckers: Foray Behavior In A Social Bird, Sahas Barve, Natasha D. G. Hagemeyer, Russell E. Winter, Samuel D. Chamberlain, Walter D. Koenig, David W. Winkler, Eric L. Walters

Biological Sciences Faculty Publications

In many cooperatively breeding taxa, nonbreeding subordinates, or helpers, use extra-territorial forays to discover dispersal opportunities. Such forays are considered energetically costly and foraying birds face aggression from conspecific members of the territories they visit. In contrast, breeders in cooperatively breeding taxa are expected to foray seldomly. We used novel tracking technologies to follow 62 acorn woodpeckers (Melanerpes formicivorus), a cooperatively breeding bird, to study extra-territorial foray behavior. Both helpers and breeders engaged in extra-territorial forays routinely and often several times per day. Helpers forayed earlier in the day and invested more time when foraying to high-quality territories. …

Evidence For P53-Mediated Induction Of Wrap53a In Response To Dna Damage, Anne Shelton Hucks

Theses and Dissertations

p53 is a powerful tumor suppressor mutated in approximately half of all cancers. Its mRNA is stabilized post-transcriptionally via complementary base pairing with the transcript of its antisense gene, WRAP53α; without this interaction, p53 protein cannot accumulate enough to carry out its many functions related to apoptosis, cell cycle arrest, and DNA damage repair. Previous studies have shown that WRAP53α is induced in response to DNA damage. The purpose of this study was to determine which transcription factors might be responsible for this induction. After identifying three putative p53 binding sites on the WRAP53α promoter, we used chromatin immunoprecipitation …

Assessing The Competitive Advantage Of Carbonic Anhydrase In Estuarine Microalgae Through Removed Enzymatic Activity, Eilea R. Knotts

Theses and Dissertations

Carbon concentrating mechanisms (CCMs) are used by photoautotrophs to overcome possible limitations in carbon acquisition but the competitive strategies and efficiencies of these mechanisms among photosynthesizers can be variable. The diversity in carbon acquisition abilities establishes the potential for alterations in community structure with shifting carbon concentrations. Given the role of phytoplankton and benthic microalgae (BMA) in the trophodynamics of estuaries, understanding the mechanisms of carbon acquisition in these systems is important in predicting how primary productivity and nutrient cycling might change in response to increasing concentrations of atmospheric CO2. Our approach to investigate whether induced carbon limitation would show …

Distribution And Dispersal Potential Of The Endemic Tree Loblolly Bay (Gordonia Lasianthus) In The Southeastern United States Coastal Plain And Implications For Conservation In The Context Of Forecast Climate Scenarios., Herrick Hermann Klaus Brown

Theses and Dissertations

Plant communities in the Southeastern United States Coastal Plain constitute a rich assemblage of species from neighboring floristic provinces and include over 1,000 species endemic to the region. Conservation of these unique landscapes requires a better understanding of potential impacts from human activity and a changing climate. As a model species, the endemic tree Loblolly Bay (Gordonia lasianthus) is representative of Carolina Bays, pocosins, and isolated wetland habitats that accentuate Longleaf Pine ecosystems which dominate the focus area. Seed-dispersal events in Loblolly Bay are limited to periods of relatively low humidity primarily during the months of October to December, and …

Population And Kin Structure Of Hawksbill Turtles: Insights On Natal Homing Precision, Time To Maturity And The Male Component Of The Breeding Population, Kathryn Erin Levasseur

Theses and Dissertations

Marine turtles have long endured population declines and face a growing number of contemporary threats, highlighting the need for population assessments and conservation action. Research on these species, however, remains a challenge due to complex and extensive oceanic life cycles that hinder direct observation. The pelagic, post-hatchling life stage is particularly difficult to track, preventing empirical research of fundamental behavior and life history traits such as natal homing precision and time to sexual maturity. Also, much of our current knowledge of marine turtles comes from nesting females and hatchlings, stages of the life cycle that are easy to observe. Far …

The Characterization Of Heavy Metals In The Diet Of Socotra Cormorants (Phalacrocorax Nigrogularis) In The United Arab Emirates, Nuray Etibar Qizi Alizada

Biology Theses

This study was performed to measure the bioaccumulation of Al, As, Cd, Co, Cr, Cu, Fe, Mn, Mo, Ni, P, Pb, V, Zn, Ca, K, Na, Mg, S, Sr, and Hg in the liver, gastrointestinal tract (GI) and muscles of one hundred and five samples of Indian anchovy (Stolephorus indicus) purchased from local fisherman at the three main study areas, namely Ajman, Sharjah, and Umm Al Quwain in UAE. The main objectives of this study were to evaluate the heavy metal concentration in the muscle, liver and gastrointestinal tract (GI) of Indian anchovy, to compare the level of …

Dormant Pathogenic Cd4(+) T Cells Are Prevalent In The Peripheral Repertoire Of Healthy Mice, Anna Cebula, Michal Kuczma, Edyta Szurek, Maciej Pietrzak, Natasha Savage, Wessam R. Elhefnawy, Grzegorz Rempala, Piotr Kraj, Leszek Ignatowicz

Computer Science Faculty Publications

Thymic central tolerance eliminates most immature T cells with autoreactive T cell receptors (TCR) that recognize self MHC/peptide complexes. Regardless, an unknown number of autoreactive CD4+Foxp3⁻ T cells escape negative selection and in the periphery require continuous suppression by CD4+Foxp3⁺ regulatory cells (Tregs). Here, we compare immune repertoires of Treg-deficient and Treg-sufficient mice to find Tregs continuously constraining one-third of mature CD4⁺Foxp3⁻ cells from converting to pathogenic effectors in healthy mice. These dormant pathogenic clones frequently express TCRs activatable by ubiquitous autoantigens presented by class II MHCs on conventional dendritic cells, including selfpeptides that select …

Global Conservation Status And Threat Patterns Of The World’S Most Prominent Forage Fishes (Teleostei, Clupeiformes), Tiffany L. Birge

Biological Sciences Theses & Dissertations

Conserving biodiversity is one of the greatest ethical responsibilities and challenges humans face. Understanding the conservation status of taxonomic groups provides a systematic way to prioritize efforts to combat biodiversity loss. The 405 species within the order Clupeiformes are the herrings, shads, sardines, anchovies, menhadens and relatives that include many of the most important marine forage fishes. These small, schooling fishes are economically, ecologically and culturally significant globally. Despite their contribution to global fisheries and our increasing reliance on these fishes for food and industrial commodities, they are generally poorly known with limited information regarding basic biology and population trends. …

Playback Of Predator Calls Inhibits And Delays Dawn Singing In A Songbird Community, Peter Santema, Mihai Valcu, Michael Clinchy, Liana Zanette, Bart Kempenaers

Biology Publications

Recent studies have demonstrated that experimental increases in perceived predation risk can substantially impair breeding behavior and reduce reproductive success. Perceived predation risk may also occur in the context of sexual signaling, with potential consequences for sexual selection. In songbirds, singing at dawn is an important sexual signal but may also attract predators. Here, we report on 2 experiments designed to test whether perceived predation risk affects the occurrence and timing of dawn singing in a songbird community. In a pilot experiment, we broadcast predator playbacks intermittently across half a forest plot and nonpredator playbacks across the other half throughout …

Why We Can’T Solve The Opioid Problem, Wayne F. Coombs, Ph.D.

Journal of Appalachian Health

Appalachia’s opioid epidemic is a complex, systemic problem being addressed by limited intervention processes conceptualized through narrow disciplinary models that are not working. We need a new comprehensive, collaborative approach if we ever hope to find solutions to this problem.

Cell Ratcheting Through The Sbf Rabgef Directs Force Balancing And Stepped Apical Constriction, Hui Miao, Timothy E. Vanderleest, Cayla E. Jewett, Dinah Loerke, J Todd Blankenship

Biological Sciences: Faculty Scholarship

During Drosophila melanogaster gastrulation, the invagination of the prospective mesoderm is driven by the pulsed constriction of apical surfaces. Here, we address the mechanisms by which the irreversibility of pulsed events is achieved while also permitting uniform epithelial behaviors to emerge. We use MSD-based analyses to identify contractile steps and find that when a trafficking pathway initiated by Sbf is disrupted, contractile steps become reversible. Sbf localizes to tubular, apical surfaces and associates with Rab35, where it promotes Rab GTP exchange. Interestingly, when Sbf/Rab35 function is compromised, the apical plasma membrane becomes deeply convoluted, and nonuniform cell behaviors begin to …