Biology Commons^™

Cross Faculty Collaboration In The Development Of An Integrated Mathematics And Science Initial Teacher Education Program, Sharon P. Fraser, Kim Beswick, Margaret Penson, Andrew Seen, Robert Whannell

Australian Journal of Teacher Education

This paper describes a collaborative project involving mathematicians, scientists and educators at an Australian university where an innovative initial teacher education (ITE) degree in mathematics/science was developed. The theoretical frameworks of identity theory and academic brokerage and their use in understanding the challenges associated with the early stages of collaborative projects is described. Data from reflections and interviews of the participants after involvement in the project from one to three years are presented to illustrate these challenges. The paper concludes with a description of the importance of the academic broker in overcoming identity challenges and facilitating cultural change for academics …

Natural History Of The Eastern Harvest Mouse In Southeastern Virginia, Robert K. Rose

Biological Sciences Faculty Publications

The Eastern Harvest Mouse, Reithrodontomys humulis, has been studied extensively in southeastern Virginia since 1979, using a combination of live and pitfall trapping methods. This smallest rodent of eastern North America also is one of most versatile, occupying a range of habitats in southeastern Virginia from old fields in different stages of succession, brushy edges, and forests of different types. As with other species of Reithrodontomys, R. humulis often is associated with the Hispid Cotton Rat, Sigmodon hispidus, with both reaching modest densities in old fields. Two capture-mark-release studies of small mammal communities in southern Chesapeake lasting …

Reproductive And Developmental Biology Of Rice Field Crab Esanthelphusa Nani (Naiyanetr, 1984), Rachata Maneein

Chulalongkorn University Theses and Dissertations (Chula ETD)

The rice field crabs are freshwater crabs that can be considered as pest in paddy field as well as a stable food source by local people. Either of these roles requires a good knowledge of its reproductive biology to manage population in nature. In this study, reproductive and endocrine cycles of male and female, and development of embryo were examined. Adult Esanthelphusa nani were field caught from Nan province during November 2015 to November 2016. Crabs were euthanized and dissected for reproductive tracts. Accessory organ nearby the mandibular muscle was collected for endocrine activities in male, while hemolymph was collected …

Ecosystem Service Assessment Of Green Roofs In Bangkok, Rattanapan Phoomirat

Chulalongkorn University Theses and Dissertations (Chula ETD)

Green roofs are constructed ecosystems that can provide four main types of ecosystem services (regulating, provisioning, cultural, and supporting services). However, most green roof studies have focused on the regulating services and each ecosystem service type was usually evaluated separately. Moreover, there is a lack of assessment tool that can provide comparable outputs of total and different ecosystem services on green roofs, resulting in the difficulty to improve ecosystem service provision by green roofs. Therefore, this research aimed to (i) assess four main categories of ecosystem services provided by seven green roofs in Bangkok using direct measurement techniques and a …

Differential Oviposition And Offspring Success Of Gray Treefrogs In The Presence Of An Invasive Fish, Geoffrey R. Smith, Johanna J. Harmon

Faculty Publications

No abstract provided.

Analysis Of User Preference With N95 And Powered Air-Purifying Respirators In A Healthcare Work Environment, Brittany Renee Carver

Graduate Theses, Dissertations, and Problem Reports (ETD)

For those working in the healthcare field, personal protective equipment is vital. Healthcare workers are often first responders when it comes to dealing with patients who are infected or when a disease outbreak occurs. The Occupational Safety and Health Administration (OSHA) requires all healthcare operations to provide employee protection against blood borne pathogens. With the increase of life-threatening disease outbreaks, such as SARS in 2003 and Ebola in 2014, it is of the upmost importance to make sure respirators are best suited for users and acceptable for long term use. It has been shown through previous studies that due to …

Ectomycorrhizal Fungal Community Assembly On Seedlings Of A Neotropical Monodominant Tree, Carolyn Delevich

Cal Poly Humboldt theses and projects

Formation of ectomycorrhizae may facilitate early seedling survival of ectomycorrhizal tree species due to enhanced nutrient acquisition. This could be especially important in heavily shaded understories of tropical monodominant forests where host plant photosynthetic capacity is limited. Little information is available on ectomycorrhizal (ECM) fungal colonization or community development of monodominant seedling cohorts, which have high survival rates. Following a 2016 mast seeding event, we sequentially measured percent colonization and species composition of ECM fungi on live and recently dead seedlings of the tropical monodominant tree Dicymbe corymbosa. We also compared seedling ECM fungi to those of nearby adult …

Visceral Adipose Tissue Modulates Radiosensitivity In Oesophageal Adenocarcinoma, Ann Marie Mongan, Niamh Lynam-Lennon, Suzanne Doyle, Rory Casey, Eibhlin Carr, Aoife Cannon, Melissa J Conroy, Graham P Pidgeon, Lorraine Brennan, Joanne Lysaght, John V. Reynolds, Jacintha O’Sullivan

Articles

Oesophageal adenocarcinoma (OAC) is an exemplar model of obesity-associated cancer. Response to neoadjuvant chemoradiotherapy (NA CRT) is a clinical challenge. We examined if visceral adipose tissue and obesity status alter radiosensitivity in OAC. The radioresistant (OE33R) and radioresponsive (OE33P) OAC isogenic model was cultured with adipose tissue conditioned media from three patient cohorts: non-cancer patients, surgery only OAC patients and NA CRT OAC patients. Cell survival was characterised by clonogenic assay, metabolomic profiling by nuclear magnetic resonance spectroscopy and adipokine receptor gene expression by qPCR. A retrospective in vivo study compared tumour response to NA CRT in normal weight (n=53) …

Habitat Characteristics And Nesting Ecology Of Golden Eagles In Arizona, Michele J. Losee

Antioch University Dissertations & Theses

Golden Eagles (Aquila chrysaetos) have a broad range globally and in general are well-studied. However, Arizona’s Golden Eagle population remained essentially unstudied until 2011, when Arizona Game and Fish Department (AZGFD) began nest surveys for cliff nesting Golden Eagles throughout the state. As a result of this data collection, the natural history of Arizona’s Golden Eagles is finally revealing itself. This dissertation outlined a reliable description of their nesting phenology that provides a framework for timing surveys and a baseline to monitor the effects of climate change on Golden Eagles. The mean date for egg-laying was February 14 and pairs …

[Introduction To] Collateral Values: The Natural Capital Created By Landscapes Of War., Todd R. Lookingbill, Peter D. Smallwood

Bookshelf

This book explores the unanticipated benefits that may arise after wars and conflicts, showing how the preservation of battlefields and the establishment of borderlands can create natural capital in the former landscapes of war. The editors call this Collateral Value, in contrast to the collateral damage that war inflicts upon infrastructure, natural capital, and human capital. The book includes case studies recounting successes and failures, opportunities and risks, and ambitious proposals.

The book is organized in two sections. The first visits U.S., English, and French battlefield sites dating from medieval England to World War I. The second explores borderlands located …

Metagenomic Sequencing Identifies Highly Diverse Assemblages Of Dinoflagellate Cysts In Sediments From Ships' Ballast Tanks, Lixia Shang, Zhangxi Hu, Yunyan Deng, Yuyang Liu, Xinyu Zhai, Zhaoyang Chai, Xiaohan Liu, Zifeng Zhan, Fred C. Dobbs, Ying Zhong Tang

OES Faculty Publications

Ships' ballast tanks have long been known as vectors for the introduction of organisms. We applied next-generation sequencing to detect dinoflagellates (mainly as cysts) in 32 ballast tank sediments collected during 2001-2003 from ships entering the Great Lakes or Chesapeake Bay and subsequently archived. Seventy-three dinoflagellates were fully identified to species level by this metagenomic approach and single-cell polymerase chain reaction (PCR)-based sequencing, including 19 toxic species, 36 harmful algal bloom (HAB) forming species, 22 previously unreported as producing cysts, and 55 reported from ballast tank sediments for the first time (including 13 freshwater species), plus 545 operational taxonomic units …

Adventures In Time And Space: What Shapes Behavioural Decisions In Drosophila Melanogaster?, Heather Malek, Tristan Af Long Dr.

Theses and Dissertations (Comprehensive)

Variation in behaviour can be observed both between individuals, based on their condition and experience as well as between populations due to sources of heterogeneity in the environment. These behavioural differences have evolved as a result of natural and sexual selection where different strategies may be favoured depending on the costs and benefits associated with those behaviours. In this thesis I examine two sources of heterogeneity within the environment and their behavioural consequences: how spatial complexity mediates sexual selection over time, and how inter and intraspecific signals and individual condition influence social oviposition behaviour. By increasing spatial complexity, we were …

Characterization Of Wssf; A Putative Acetyltransferase From Achromobacter Insuavis And Pseudomonas Fluorescens, Cody Reese

Theses and Dissertations (Comprehensive)

Biofilms are a survival mechanism commonly employed by communities of bacteria for adherence and protection. Bacteria produce a matrix of polymers (e.g. exopolysaccharides, such as cellulose) that allow them to exert control on their local environment. In the case of cellulose biofilms, acetylation (addition of acetate on carbohydrates) is paramount for polymer integrity and in some cases virulence. For this research, the wrinkly spreader (WS) genotype of the emergent human pathogen Achromobacter insuavis facilitates infections of the eyes of contact lens wearers and the lungs of Cystic Fibrosis patients (CF). Chronic infections have created a growing concern for the protective …

The Impacts Of Gold Mining On Vegetation And Mycorrhizal Colonization In Northern Canada, Sarah Mediouni

Theses and Dissertations (Comprehensive)

Gold mining is an important part of economic development in Northern Canada. A large portion of the gold that is found in the North is contained within arsenopyrite ores, therefore, arsenic contamination is of special concern. Little is known regarding the impacts of arsenic on plants and mycorrhizae in Northern Ecosystems. Arsenic has been shown to negatively impact plant growth and seed germination in some temperate species, while others are tolerant and can accumulate arsenic concentrations over 1000 mg/kg. In temperate regions, arbuscular mycorrhiza can accelerate the remediation process in gold mines by supporting plant growth in poor soil conditions …

Dispersal As A Buffer Against Zooplankton Community Change In Response To Fluctuating Salinity Levels On The Great Plains, Mercedes Huynh

Theses and Dissertations (Comprehensive)

The North American Great Plains is home to thousands of closed-basin lakes that are sensitive to changes in hydrology. Climate change models predict increased aridity in this region over the coming century, which is expected to lead to higher salinity levels in many freshwater lakes. Increases in salinity levels may impact zooplankton communities, as laboratory experiments show that many freshwater species have a low tolerance for elevated salinity levels, and field data demonstrate that salinity is the primary factor structuring aquatic communities on the Great Plains. Changes to zooplankton communities could lead to a trophic cascade based on their important …

Happy Or Hangry Families: Does Kinship Mediate Cooperation And Cannibalism In Drosophila Melanogaster Larvae?, Lucas Khodaei

Theses and Dissertations (Comprehensive)

The fruit fly Drosophila melanogaster has a long history as a research model for studies on behaviour and group dynamics. When individuals are grouped in an environment and resources decrease, then they may behave co-operatively with one another or antagonistically compete. Hamilton’s Law states that if the benefit of helping a related individual out-weighs the cost to its direct fitness, then the individual’s indirect fitness will increase when they help their kin compared to helping an unrelated stranger. Yet it is unknown whether kinship mediates larval behaviour to encourage co-operation and/or lessen antagonistic behaviours between consanguineous individuals. In this thesis …

Diversity And Evolution Of Seeds In Cuscuta (Dodders, Convolvulaceae): Morphology And Structure, Magdalena Olszewski

Theses and Dissertations (Comprehensive)

Cuscuta is a genus of nearly 200 obligate stem parasites with a nearly cosmopolitan distribution and considerable agricultural and ecological significance. Dodder seeds are considered “unspecialized”, with no morphological adaptations towards particular dispersal vectors; however, the seed coat anatomy has recently suggested an adaptation to endozoochory. This is the first attempt to provide a genus-wide overview of the diversity in morphology and anatomy of Cuscuta seeds, together with an assessment of the water gap and exploration of various form-function relationships. I surveyed 104 species belonging to all four Cuscuta subgenera. Seeds of the species of the first infrageneric dodder …

Context Is Everything: An Investigation Of Spanish River Carbonatite And Its Effects On Soil-Plant-Microorganism Systems, James Mc Jones

Theses and Dissertations (Comprehensive)

With growing concerns about agricultural sustainability and food security, the use of rock fertilizers and agrominerals is receiving renewed interest. A wide variety of geological resources have been proposed as crop nutrient sources, with silicate rocks the predominant focus. Carbonatite rocks are known to weather more readily than silicate rocks; yet, they have received relatively little attention as it is thought their high Ca and Mg contents hinder effective nutrient release. However, there is strong evidence that the nutrients within carbonatite rocks are easily accessible to plants, and that these rocks have noticable effects on crop plant growth. Here I …

Competition Or Facilitation: Examination Of Interactions Between Endangered Sida Hermaphrodita And Invasive Phragmites Australis, Samantha N. Mulholland

Theses and Dissertations (Comprehensive)

Virginia Mallow (Sida hermaphrodita) is a perennial herb of the Malvaceae family that is native to riparian habitats in northeastern North America. Throughout most of its geographical distribution however, it is considered threatened and only two populations are known from Canada. The biology and ecology of S. hermaphrodita are still poorly understood and although few studies have been performed to determine the factors that contribute to the species rarity, it is considered threatened potentially due to the loss of habitat caused by exotic European Common reed (Phragmites australis subsp. australis) invasion. Allelopathic and phytotoxic conditioning of …

Investigating The Antiviral Effects Of Vig-3 From Rainbow Trout, Shanee Herrington-Krause

Theses and Dissertations (Comprehensive)

Rainbow trout is the most farmed fish in Ontario, and thus is economically important to the province. Despite this, there is a lack of understanding regarding fish innate immunity, specifically with regards to interferon-stimulated genes (ISGs) and their antiviral effector functions. ISGs are the workhorses of the innate antiviral response, operating together to limit each step of virus replication. The Viral Hemorrhagic Septicemia Virus (VHSV) induced gene (Vig)-3 is a newly identified ISG within many fish species and is homologous to ISG-15 in mammals. It is a small ubiquitin-like protein inducible by type I interferon (IFN-I), and is suggested to …

Phylogenetic, Genomic, And Biogeographic Characterization Of Anovel And Ubiquitous Marine Invertebrate-Associated Rickettsiales Parasite,Candidatus Aquarickettsia Rohweri, Gen. Nov., Sp. Nov, J. Grace Klinges, Stephanie M. Rosales, Ryan Mcminds, Koty H. Sharp

Arts & Sciences Faculty Publications

Bacterial symbionts are integral to the health and homeostasis of invertebrate hosts. Notably, members of the Rickettsiales genus Wolbachia influence several aspects of the fitness and evolution of their terrestrial hosts, but few analogous partnerships have been found in marine systems. We report here the genome, phylogenetics, and biogeography of a ubiquitous and novel Rickettsiales species that primarily associates with marine organisms. We previously showed that this bacterium was found in scleractinian corals, responds to nutrient exposure, and is associated with reduced host growth and increased mortality. This bacterium, like other Rickettsiales, has a reduced genome indicative of a parasitic …

Maternal Sociodemographic And Health Behaviours Associated With Adiposity In Infants As Measured By Air Displacement Plethysmography., A. Bennett

Articles

BACKGROUND:

Identifying modifiable factors associated with body fat in infancy may improve health outcomes. Few studies have examined factors associated with percentage body fat calculated using air displacement plethysmography, a gold standard technique.

AIMS:

To investigate maternal sociodemographic and health behaviour characteristics associated with percentage body fat in offspring at birth.

STUDY DESIGN:

Observational cross-sectional study in which the body composition of term infants was measured by air displacement plethysmography during the hospital stay after birth.

SUBJECTS:

One-hundred-and-ninety-six women and their term (37-42 weeks) infants.

OUTCOME MEASURES:

Associations between infant body composition and maternal sociodemographic and health characteristics.

RESULTS:

One-hundred-and-ninety-six …

Tmem203 Is A Binding Partner And Regulator Of Sting-Mediated Inflammatory Signaling In Macrophages, Yang Li, Sharmy J. Jmes, David H. Wylie, Claire Wynne, Agnes Czibula, Ahmed Bukhari, Katherine Pye, Seri Musfirah Bte Mustafah, Roberta Fajka-Boja, Adrienn Angyal, Zoltan Hegedus, Adrian V.S. Hill, Catherine A. Jefferies, Heather L. Wilson, Zhang Yongliang, Endre Kiss-Toth

Articles

Regulation of IFN signaling is critical in host recognition and response to pathogens while its dysregulation underlies the pathogenesis of several chronic diseases. STimulator of IFN Genes (STING) has been identified as a critical mediator of IFN inducing innate immune pathways, but little is known about direct coregulators of this protein. We report here that TMEM203, a conserved putative transmembrane protein, is an intracellular regulator of STING-mediated signaling. We show that TMEM203 interacts, functionally cooperates, and comigrates with STING following cell stimulation, which in turn leads to the activation of the kinase TBK1, and the IRF3 transcription factor. This induces …

Ultrasound/Elastography Techniques, Lipidomic And Blood Markers Compared To Magnetic Resonance Imaging In Non-Alcoholic Fatty Liver Disease Adults, Irene Cantero, Mariana Elorz, Itziar Abete, Bertha Araceli Marin, Jose Ignacio Herrero, Jose Ignacio Monreal, Alberto Benito, Jorge Quiroga, Ana Martínez, Pilar Huarte, Juan Isidro Uriz-Otano, Josep Antoni Tur, John Kearney, J. Alfredo Martinez, M. Angeles Zulet

Articles

Introduction: Non-alcoholic fatty liver disease (NAFLD) may progress to steatohepatitis, cirrhosis and complicated hepatocellular carcinoma with defined differential symptoms and manifestations. Objective: To evaluate the fatty liver status by several validated approaches and to compare imaging techniques, lipidomic and routine blood markers with magnetic resonance imaging in adults subjects with non-alcoholic fatty liver disease. Materials and methods: A total of 127 overweight/obese with NAFLD, were parallelly assessed by Magnetic Resonance Imaging (MRI), ultrasonography, transient elastography and a validated metabolomic designed test to diagnose NAFLD in this cross-sectional study. Body composition (DXA), hepatic related biochemical measurements as well as the Fatty …

Taxonomic Revision Of The Haemaphysalis (Rhipistoma) Spinulosa Subgroup, Parasites Of Carnivores And Other Mammals In Sub-Saharan Africa, Jackson A. Tomlinson

College of Graduate Studies: Theses & Dissertations

Nine new species of Haemaphysalis are here described based on a morphological analysis of 7,077 adult specimens stored in the U.S. National Tick Collection (Georgia Southern, Statesboro, USA) and collected from various carnivores (Carnivora: Canidae, Felidae, Herpestidae, Hyaenidae, Mustelidae, Nandiniidae, Viverridae) and hedgehogs (Erinaceomorpha: Erinaceidae); few specimens were found on hares (Lagomorpha: Leporidae), various rodents (Rodentia: Bathyergidae, Cricetidae, Muridae, Nesomyidae, Pedetidae, Sciuridae, Spalacidae) and other mammals (Artiodactyla, Chiroptera, Hyracoidea, Perissodactyla, Primates, and Soricomorpha) in 29 sub-Saharan African countries. In addition to descriptions of new species, 4 species, namely H. spinulosa Neumann, 1906, H. muhsamae Santos Dias, 1954, H …

Negative Effects Of Common Herbicides On Non-Target Invertebrates, Debbi Albanese

College of Graduate Studies: Theses & Dissertations

Three herbicide formulations, Roundup® Ready to Use Weed and Grass Killer, Bayer Advanced Southern Weed Killer for Lawns and Pure 20% Vinegar Solution were directly applied to eggs of four species of butterflies, Danaus plexippus, Papilio cresphontes, Papilio polyxenes and Papilio troilus. Roundup and Bayer Advanced containing 2,4-D, mecoprop-p and dicamba significantly reduced hatch success in all four species. Lethal and sublethal effects of these herbicides on the earthworm, Eisenia andrei, was also examined. Direct contact by E. andrei with a heavy dose of the herbicides applied to tops of soil 24 hours prior was lethal to earthworms. …

Bird Window Strikes On A College Campus: Mortality Estimates And Possible Mitigation, Antarius D. Mclain

College of Graduate Studies: Theses & Dissertations

Understanding the impact that human development has on wildlife populations is essential to preserving biodiversity. Bird populations are a good indicator of anthropogenic threats because they are sensitive to environmental change. Window strikes are a major source of mortality for bird populations. Studies have begun to monitor factors that cause window strikes and estimate the amount of birds killed annually by strikes. However, these estimates can be greatly affected by site dependent variables and scavenging of carcasses. My study addresses this issue by answering four questions: First, how many birds are killed annually on campus? Second, what factors complicate making …

Of Course, Humans Are Not Unique!, Bernard Wallner

Animal Sentience

This commentary focuses on the question of the uniqueness of humans in comparison to other species and on the false assumption that single arguments support logical conclusions. Comparative analysis of genetic data in humans and nonhuman primates regarding the dopaminergic system of the subcortical mesolimbic reward system highlights homologous traits shared and modified by the process of evolution. Such an analytical approach is more relevant than claims of uniqueness.

Testing For Cryptic Diversity And Inference Of Population Structure In The Cosmopolitan Hoplonemertean Emplectonema Gracile (Nemertea), Paul L. Delaney Iv

Theses and Dissertations

Emplectonema gracile (Johnston 1837) is a hoplonemertean of marine intertidal hard-bottom communities and is distributed throughout the Northern Hemisphere. Although possessing a planktonic larval stage in its life history, the range of such cosmopolitan marine invertebrate species is often explained by cryptic speciation and anthropogenic transport. The purpose of this study is to test for possible cryptic species using mtDNA markers (COI and 16S rDNA) and to investigate population structure in E. gracile over a portion of its geographic range using mtDNA markers and ddRADseq nuclear SNP data. The results of both phylogenetic- and tree-based species delimitation revealed that E. …

Written In Bone: Damage Patterns In Agonopsis Vulsa Armor, Morgan Stewart

Scripps Senior Theses

Naturally occurring armor has evolved in many different classes of organisms, often in response to predation, although other factors may play a part. In this study, the scales of the benthic armored fish Agonopsis vulsa were examined for damage patterns in order to illuminate the life history and environmental interactions of the fish. Scales from the fish were systematically destroyed in the lab, and observations made from the damaged scales were used to create a categorical damage rating, which was applied to 34 specimens ranging in trunk length from 2.3 cm to 14.2 cm. The specimens were rendered as three-dimensional …