Biology Commons^™

The Ecology Of Land Managers In Riparian Restoration, Lisa Buie Clark

Electronic Theses and Dissertations

While previous studies in restoration ecology have focused on the efficacy of direct management actions, the driving forces on management decisions (e.g., managers' characteristics or attitudes, environmental conditions) and the indirect impacts on restoration outcomes from management decisions (such as whether to collaborate) are quantified here for the first time. As a case study, I used data from 244 sites across the riparian Southwest US where the invasive shrubby tree Tamarix sp. was removed using various different methods. I surveyed and interviewed the 45 land managers who were responsible for the removal projects to determine their characteristics, attitudes, and …

A Comparative Study Of Sleep, Diurnal Patterns, And Eye Closure Between The House Mouse (Mus Musculus) And African Spiny Mouse (Acomys Cahirinus), Chanung Wang

Theses and Dissertations--Biology

To understand the function and origins of sleep, sleep needs to be studied across many different species. Although it is well conserved throughout mammals, 95% of papers are restricted to just three species, Homo sapiens, Mus musculus, and Rattus norvegicus. We aimed to characterize sleep and wake in a Murid rodent Acomys cahirinus in greater detail alongside the well-studied laboratory house mouse (Mus musculus) and wild M. musculus using a well validated, non-invasive, piezoelectric system for sleep and activity monitoring. We confirmed A. cahirinus, M. musculus, and wild M. musculus to be primarily …

The Effects Of Temperature On Batrachochytrium Dendrobatidis Resistance And Heart Rate In The Polymorphic Eastern Red-Backed Salamanders, Plethodon Cinereus, Joseph Alan Demarchi

Masters Theses

No abstract provided.

Ecoevo-Maps: An Ecology And Evolution Assessment For Introductory Through Advanced Undergraduates, Mindi M. Summers, Brian A. Couch, Jennifer K. Knight, Sara E. Brownell, Alison J. Crowe, Katharine Semsar, Christian D. Wright, Michelle K. Smith

School of Biological Sciences: Faculty Publications

A new assessment tool, Ecology and Evolution–Measuring Achievement and Progression in Science or EcoEvo-MAPS, measures student thinking in ecology and evolution during an undergraduate course of study. EcoEvo-MAPS targets foundational concepts in ecology and evolution and uses a novel approach that asks students to evaluate a series of predictions, conclusions, or interpretations as likely or unlikely to be true given a specific scenario. We collected evidence of validity and reliability for EcoEvo-MAPS through an iterative process of faculty review, student interviews, and analyses of assessment data from more than 3000 students at 34 associate’s-, bachelor’s-, master’s-, and doctoral-granting institutions. The …

Mitochondrial Dysfunction And Infection Generate Immunity–Fecundity Tradeoffs In Drosophila, Justin L. Buchanan, Colin D. Meiklejohn, Kristi L. Montooth

School of Biological Sciences: Faculty Publications

Physiological responses to short-term environmental stressors, such as infection, can have long-term consequences for fitness, particularly if the responses are inappropriate or nutrient resources are limited. Genetic variation affecting energy acquisition, storage, and usage can limit cellular energy availability and may influence resourceallocation tradeoffs even when environmental nutrients are plentiful. Here, we utilized Drosophila mitochondrial– nuclear genotypes to test whether disrupted mitochondrial function interferes with nutrient-sensing pathways, and whether this disruption has consequences for tradeoffs between immunity and fecundity. We found that an energetically-compromised genotype was relatively resistant to rapamycin—a drug that targets nutrient-sensing pathways and mimics resource limitation. Dietary …

Time-Lagged Effects Of Weather On Plant Demography: Drought And Astragalus Scaphoides, Brigitte Tenhumberg, Elizabeth E. Crone, Satu Ramula, Andrew J. Tyre

School of Biological Sciences: Faculty Publications

Temperature and precipitation determine the conditions where plant species can occur. Despite their significance, to date, surprisingly few demographic field studies have considered the effects of abiotic drivers. This is problematic because anticipating the effect of global climate change on plant population viability requires understanding how weather variables affect population dynamics. One possible reason for omitting the effect of weather variables in demographic studies is the difficulty in detecting tight associations between vital rates and environmental drivers. In this paper, we applied Functional Linear Models (FLMs) to long-term demographic data of the perennial wildflower, Astragalus scaphoides, and explored sensitivity of …

Synbiotics For Improved Human Health: Recent Developments, Challenges, And Opportunities, Janina A. Krumbeck, Jens Walter, Robert W. Hutkins

School of Biological Sciences: Faculty Publications

Research on combining pro- and prebiotics as synbiotics to enhance human and animal health has accelerated in the past 10 years, including many clinical trials that have assessed a diverse range of synbiotic formulations. In this review, we summarize these studies as well as the commercial applications of synbiotics that are available. In particular, we critically assess the claimed health benefits of synbiotic applications and the ecological and therapeutic factors to consider when designing synbiotics and discuss the implications of these concepts for future research in this field.

Molecular Basis Of Hemoglobin Adaptation In The High-Flying Bar-Headed Goose, Chandrasekhar Natarajan, Agnieszka Jendroszek, Amit Kumar, Roy E. Weber, Jeremy R. H. Tame, Angela Fago, Jay F. Storz

School of Biological Sciences: Faculty Publications

During the adaptive evolution of a particular trait, some selectively fixed mutations may be directly causative and others may be purely compensatory. The relative contribution of these two classes of mutation to adaptive phenotypic evolution depends on the form and prevalence of mutational pleiotropy. To investigate the nature of adaptive substitutions and their pleiotropic effects, we used a protein engineering approach to characterize the molecular basis of hemoglobin (Hb) adaptation in the high-flying bar-headed goose (Anser indicus), a hypoxia-tolerant species renowned for its trans-Himalayan migratory flights. To test the effects of observed substitutions on evolutionarily relevant genetic backgrounds, …

Change In Dominance Determines Herbivore Effects On Plant Biodiversity, Sally E. Koerner, Johannes Knops, Dustin J. Strong, 80 More Co-Authors

School of Biological Sciences: Faculty Publications

Herbivores alter plant biodiversity (species richness) in many of the world's ecosystems, but the magnitude and the direction of herbivore effects on biodiversity vary widely within and among ecosystems. One current theory predicts that herbivores enhance plant biodiversity at high productivity but have the opposite effect at low productivity. Yet, empirical support for the importance of site productivity as a mediator of these herbivore impacts is equivocal. Here, we synthesize data from 252 large-herbivore exclusion studies, spanning a 20-fold range in site productivity, to test an alternative hypothesis—that herbivore-induced changes in the competitive environment determine the response of plant biodiversity …

Adiposity And Fat Metabolism During Combined Fasting And Lactation In Elephant Seals, Melinda Fowler, Cory Champagne, Daniel Croker

Biological Sciences Faculty Publications

Animals that fast depend on mobilizing lipid stores to power metabolism. Northern elephant seals (Mirounga angustirostris) incorporate extended fasting into several life-history stages: development, molting, breeding and lactation. The physiological processes enabling fasting and lactation are important in the context of the ecology and life history of elephant seals. The rare combination of fasting and lactation depends on the efficient mobilization of lipid from adipose stores and its direction into milk production. The mother elephant seal must ration her finite body stores to power maintenance metabolism, as well as to produce large quantities of lipid and protein rich …

Modelling The Effects Of Habitat And Hosts On Tick Invasions, Robyn M. Nadolny, Holly D. Gaff

Biological Sciences Faculty Publications

Many tick species are invading new areas because of anthropogenic changes in the landscape, shifting climatic variables and increasing populations of suitable host species and tick habitat. However, the relative influences of habitat and hosts in tick dispersal and tick population establishment remain in question. A spatially explicit agent-based model was developed to explore the spatio-temporal dynamics of a generic tick population in the years immediately following the introduction of ticks into a novel environment. The general model was then adapted to investigate a case study of two recent tick species invasions into the Mid-Atlantic United States. The recent simultaneous …

Nocturnally-Migrating Birds Traverse Earth's Most Light-Polluted Regions, And Bright Lights Confound Their Habitat Use En Route, Jeffrey J. Butler, James D. Mclaren, Sergio A. Cabrera-Cruz, Jaclyn A. Smolinsky, Timothy D. Schreckengost, Matthew E. Boone, E. Emiel Van Loon, Deanna K. Dawson, Eric L. Walters

Biological Sciences Faculty Publications

No abstract provided.

The Influence Of Physiological And Abiotic Factors On The Sensitivity Of The Sea Lamprey (Petromyzon Marinus) To The Lampricide 3-Trifluoromethyl-4-Nitrophenol (Tfm), Alexandra Muhametsafina

Theses and Dissertations (Comprehensive)

Invasive sea lamprey (Petromyzon marinus) in the Great Lakes are controlled using the pesticide (lampricide) 3-trifluoromethyl-4-nitrophenol (TFM), which is applied to nursery streams containing larval lamprey. The toxicity of TFM to lamprey is affected by various environmental and physiological factors, which can lead to residual lamprey that survive TFM treatment. The goal of this study was to investigate how abiotic (season and temperature) factors interacted with physiological parameters (whole body and tissue energy reserves) to influence TFM sensitivity in sea lamprey. Toxicity tests were conducted at different times of the year (spring, early and late summer, fall) and …

The Influence Of Water Chemistry And Gill Physiology On The Uptake Of The Lampricide Tfm By Lake Sturgeon (Acipenser Fulvescens), Scott Leslie James Hepditch

Theses and Dissertations (Comprehensive)

Application of 3-trifluoromethyl-4-nitrophenol (TFM) to control invasive sea lamprey (Petromyzon marinus) within the Laurentian Great Lakes seldom causes non-target mortality. However, under certain conditions, TFM can harm species such as the lake sturgeon (Acipenser fulvescens). Lake sturgeon less than 100mm in length are particularly vulnerable to TFM-induced mortality, and are more sensitive to TFM toxicity with increasing water alkalinity as compared to sea lamprey. The objectives of this study were to evaluate the influence of pH and alkalinity on the uptake of TFM by juvenile sturgeon using radio-labeled TFM (¹⁴C-TFM). An additional objective was …

Black Cohosh Seed Germination And Conservation, W. John Hayden

Biology Faculty Publications

Like many plant enthusiasts, I have spent a considerable amount of time planting seeds. Every year I grow many vegetables—my garden always includes some annual bedding plants—and I sow seeds of cover crops (winter wheat, winter rye, and buckwheat) by the tens of thousands. While I have committed vast numbers of propagules to moist soil, I cannot say that I have watched every single one sprout. Nevertheless, I certainly have observed the germination process many, many times for lots of different seeds. For these seeds of garden plants, germination is quite rapid, just a few days to maybe as much …

Review Of The Family Rivulidae (Cyprinodontiformes, Aplocheiloidei) And A Molecular And Morphological Phylogeny Of The Annual Fish Genus Austrolebias Costa 1998, Marcelo Loureiro, Rafael O. De Sá, Sebastián W. Serra, Felipe Alonso, Luis Esteban Krause Lanés, Matheus Vieira Volcan, Pablo Calviño, Et. Al.

Biology Faculty Publications

The family Rivulidae is the fourth most diverse clade of Neotropical fishes. Together with some genera of the related African family Nothobranchiidae, many rivulids exhibit a characteristic annual life cycle, with diapausing eggs and delayed embryonic development, which allows them to survive in the challenging seasonal ponds that they inhabit. Rivulidae also includes two species known as the only the self-fertilizing vertebrates and some species with internal fertilization. The first goal of this article is to review the systematics of the family considering phylogenetic relationships and synapomorphies of subfamilial clades, thus unifying information that is dispersed throughout the literature. From …

Biological Activities Of Phenolic Compounds Extracted From Some Plant Species From East Kalimantan Province, Indonesia, Franxisca Mariani

Chulalongkorn University Theses and Dissertations (Chula ETD)

Ten medicinal plants used in this study are based on the experience of Dayak tribes. The scientific information about these plants are still limited, therefore, the objective of the present study was to analyze their phenolic content and biological activities. A selected species was subjected to successive extraction and compound isolation. The total phenolic content and total antioxidant capacity were analyzed by using Folin-Ciocalteu reagent and the phosphomolybdenum method, respectively. DPPH and ABTS assays were used for analyzing antioxidant activities. The antibacterial activity was performed against six bacterial strains by agar well diffusion and microdilution methods. The anti-tyrosinase activity used …

Taxonomy And Systematics Of Dragon Millipedes Genus Desmoxytes Chamberlin, 1923 In Thailand, Ruttapon Srisonchai

Chulalongkorn University Theses and Dissertations (Chula ETD)

Taxonomy and systematics of the dragon millipede genus Desmoxytes sensu Golovatch & Enghoff (1994) (= Desmoxytes s.l.) of the family Paradoxosomatidae has been analyzed and implemented based on an integrative approach by morphological revision and molecular phylogeny from three partial genes (COI, 16S rRNA and 28S rRNA). The specimens were collected mainly from Thailand and neighboring countries in mainland Southeast Asia, and were compared with available type material. Taxonomic revision resulted in the subdivision of Desmoxytes s.l. into five genera, viz., Desmoxytes s.s., Hylomus stat. rev., Nagaxytes gen. nov., Gigaxytes gen. nov. and Spinaxytes gen. nov. All five genera showed …

Effects Of Diabetes On Ovarian Cancer: Data Analysis And Modeling Study, Claire Belay

Theses and Dissertations

Ovarian cancer has one of the highest mortality rates of all gynecological cancers [13]. Further knowledge of risk factors for the growth of ovarian tumors would be beneficial in both the treatment and prevention of this type of cancer. Previous research has shown a positive correlation between diabetes and prostate tumor growth [22], The first aim of this study was to determine the effect of diabetes of ovarian tumor growth. The second aim was to develop a model to predict ovarian tumor growth based on the microenvironment within a patient’s body. The hypothesis was that there would be a positive …

Natural And Anthropogenic Drivers Of Tree Evolutionary Dynamics, Brandon M. Lind

Theses and Dissertations

Species of trees inhabit diverse and heterogeneous environments, and often play important ecological roles in such communities. As a result of their vast ecological breadth, trees have become adapted to various environmental pressures. In this dissertation I examine various environmental factors that drive evolutionary dynamics in threePinusspecies in California and Nevada, USA. In chapter two, I assess the role of management influence of thinning, fire, and their interaction on fine-scale gene flow within fire-suppressed populations of Pinus lambertiana, a historically dominant and ecologically important member of mixed-conifer forests of the Sierra Nevada, California. Here, I find evidence …

Patterns Of Molecular Population Genetic And Phenotypic Variation Associated With Urbanization In The Western Black Widow Spider, Lindsay Miles

Theses and Dissertations

In urban population genetic studies, the "urban fragmentation model" predicts that urbanization acts as a barrier that isolates native populations, and can lead to reduced gene flow and increased genetic drift between populations. The “urban facilitation model” predicts urban areas act as corridors to increase dispersal among urban areas, and can lead to higher genetic diversity within and lower differentiation between urban areas.

In a review of the current literature, we found that there is no consistent signature of reduced within-population genetic diversity or increased between-population genetic differentiation. Analyses that investigate the urban barriers to gene flow also found no …

Leptodactylus Validus Garman, 1888 In Colombia: Its Distribution And Identification, Andres R. Acosta Galvis, Rafael O. De Sá

Biology Faculty Publications

Leptodactylus validus is reported for the first time for Colombia, corresponding to the tenth species of the L. melanonotus species group occurring in the country. In collections, all L. validus specimens were identified as L. colombiensis. Morphological, coloration, and ecological characters are provided to differentiate the two species in Colombia. Furthermore, the distribution of L. validus is expanded based on the examination of specimens in both collections and literature records. In addition, the advertisement call of L. validus from Colombia is compared with those reported for other continental and insular populations; the calls are slightly more similar to those …

Physiological Responses To Elevated Temperature Across The Geographic Range Of A Terrestrial Salamander, Alexander J. Novarro, Caitlin R. Gabor, Cory B. Goff, Tori D. Mezebish, Lily M. Thompson, Kristine L. Grayson

Biology Faculty Publications

Widespread species often possess physiological mechanisms for coping with thermal heterogeneity, and uncovering these mechanisms provides insight into species responses to climate change. The emergence of non-invasive corticosterone (CORT) assays allows us to rapidly assess physiological responses to environmental change on a large scale. We lack, however, a basic understanding of how temperature affects CORT, and whether temperature and CORT interactively affect performance. Here, we examine the effects of elevated temperature on CORT and whole-organism performance in a terrestrial salamander, Plethodon cinereus, across a latitudinal gradient. Using water-borne hormone assays, we found that raising ambient temperature from 15 to 25°C …

An Examination Of Beta Diversity Indices And Their Predictors In Two Large-Scale Systems, Philip Schroeder

Electronic Theses and Dissertations

Biodiversity is what conservation biology was developed to conserve. It is the physical manifestation of life as a concept and, be it for practical or idealistic reasons, all conservationists seek to protect or, in some cases, enhance it. Because of its monolithic importance to the field, much effort has been expended trying to better measure and understand it. Recently, greater attention has been paid to the partition of diversity; the observation that the total diversity of a system (γ) can be broken down into within-site diversity (α) and between-site diversity (β). In particular, it has been noticed that the β …

Coloration, Camouflage, And Sexual Dichromatism In The Northern Pacific Rattlesnake (Crotalus Oreganus), Jefferson Brooks

All Master's Theses

In some viperid snakes, natural selection has shaped coloration and patterning to match local habitats, and for males to show greater warning coloration than females due to a less sedentary lifestyle. The Northern Pacific Rattlesnake (Crotalus oreganus) is likely the most abundant ambush predator in eastern Washington, yet little is known about its color variation, how color patterns interact with their habitats, and if male and female snakes show differences in patterning or color. To explore how snake color might interact with the colors of their environment, I used standardized digital photography to record both snake and substrate coloration. …

Accurate Measurement Of Main Aerosol Constituents From Heated Tobacco Products (Htps): Implications For A Fundamentally Different Aerosol, Hovik J. Gasparyan

Biology Faculty Works

ISO 4387 Standard determines the main aerosol constituents (total particulate matter, water, nicotine, and nicotine-free-dry-particulate matter, referred to as “tar”) in cigarette mainstream smoke (ISO, 2000). Heated Tobacco Products (also called Tobacco Heating Products or Heat-not-Burn Products) are designed to form aerosol by heating tobacco rather than burning like in combustible cigarettes. In this study we have evaluated the suitability of ISO 4387 Standard to be adapted for quantifying main aerosol constituents for HTP aerosol. HTP emissions have much higher levels of water and humectants (e.g., glycerol) in dynamic equilibria between gaseous and particulate phases. Several modifications to ISO 4387 …

Breaking Boundaries In Computing In Undergraduate Courses, Kam D. Dahlquist, John David N. Dionisio, Ran Libeskind-Hadas, Anna E. Bargagliotti

Biology Faculty Works

An important question in undergraduate curricula is that of incorporating computing into STEM courses for majors and non-majors alike. What does it mean to teach “computing” in this context? What are some of the benefits and challenges for students and instructors in such courses? This paper contributes to this important dialog by describing three undergraduate courses that have been developed and taught at Harvey Mudd College and Loyola Marymount University. Each case study describes the course objectives, implementation challenges, and assessments.

The Rtfa Gene Regulates Plant And Animal Pathogenesis And Secondary Metabolism In Aspergillus Flavus, Jessica Michelle Lohmar

Graduate Research Theses & Dissertations

Aspergillus flavus is an opportunistic fungal plant and human pathogen and producer of mycotoxins including aflatoxin B1 (AFB1). As part of our ongoing studies to elucidate biological functions of the A. flavus rtfA gene, we examined its role in pathogenicity of both plant and animal model systems. rtfA encodes a putative RNA-Pol II transcription elongation factor, previously characterized in Saccharomycese cerevisiae, Aspergillus nidulans, Aspergillus fumigatus, where it was shown to regulate several important cellular processes, including morphogenesis, secondary metabolism. In addition, an initial study in A. flavus indicated that rtfA also influences development and production of AFB1, however its effect …

Reproductive Promiscuity In The Variegated Fairy-Wren: An Alternative Reproductive Strategy In The Absence Of Helpers?, Allison E. Johnson, Stephen Pruett-Jones

School of Biological Sciences: Faculty Publications

Cooperative breeding, in which auxiliary group members help rear related, but nondescendent young, is often explained by kin selection. Reproductive monogamy is predicted in cooperatively breeding systems, as monogamy increases intragroup relatedness and maximizes auxiliary inclusive fitness. While monogamy is observed across many systems, including eusocial insects and cooperatively breeding mammals, some cooperatively breeding birds exhibit high rates of extrapair paternity. Here we quantify paternity and examine the role of auxiliaries on extrapair paternity in the highly cooperative variegated fairy-wren, Malurus lamberti, a species with both male and female auxiliaries. Extrapair paternity occurred in 55.4% of nests, and 39.8% …

Nutrigenomics: Using Sulforaphane Consumption As A Mechanism To Prevent Cardiovascular Disease Through Epigenetic Regulation, Alisha Agrawal

UROP Posters

Cardiovascular disease is the leading cause of death in the United States. Diet composition and reduced expression of the transcription factor Nrf2 are both possible factors contributing to cardiovascular disease. As vitamin supplementation grows in scope and popularity, it is becoming common to replace vegetable consumption with multivitamins. The purpose of this research was to investigate how sulforaphane, an isothiocyanate found in its greatest quantities in broccoli, prevents cardiovascular disease through epigenetic regulation in order to promote the understanding that vitamin supplementation does not adequately replace the health benefits of phytonutrients found in vegetables. In order to investigate sulforaphane’s ability …